| Definition | Natranaerobius thermophilus JW/NM-WN-LF, complete genome. |
|---|---|
| Accession | NC_010718 |
| Length | 3,165,557 |
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The map label for this gene is yhcH [H]
Identifier: 188585624
GI number: 188585624
Start: 1062274
End: 1063149
Strand: Direct
Name: yhcH [H]
Synonym: Nther_0997
Alternate gene names: 188585624
Gene position: 1062274-1063149 (Clockwise)
Preceding gene: 188585623
Following gene: 188585625
Centisome position: 33.56
GC content: 32.42
Gene sequence:
>876_bases ATGAGCGCTATTTGTTTTGAAAATGTTTCTAAGAAATTTGGTGACTCAAAAATTATCGACGATTTTAATTTAACAATAGA ACGTGGCACAGTATTTGGTTTTATCGGACCCAATGGAGCTGGGAAAACAACTACCATAAAAATGCTGACAGGGCTTATTA AACCGACGACAGGATCAATAAAAATACTTAACCAAGATATCTCAAATGGATATCAAATTTTAGATCACATTGGTTATGTT TCCGAAGAAAGTAATCTTTATAATTACATGACTTTCCAAGGTATTTTAAACTTTGCGAAAGGTTTTTATACTAATTGGGA TCCGAGTCTAGTCGATAAGTATACGGAGTTTTTTCGGCTTCCTTTAAATCAACCTATTAAGGAATTTTCTAAAGGTATGA AAGTAAAAGTTTCTCTCGTTCTAGCACTGGCCCATAACCCCAAAATTTTGATATTAGATGAACCAACAAGTGGGCTAGAC CCTATTTTTAGAAGGGAATTTTTAAATGTTCTAGTAGAAGAAATGACTCAATCAGAGAAAACTATTTTCTTTTCATCTCA CATTATTGATGATGTTGAGAGAATTGCTGATCAGATAGGCATAATTAATGATGGGCGGTTGTTGAAAGTTAGAGATATGG ATGAACTTAAAACCAATGAAAAGAAGATTAGAGTTGTTTTTCAAAGAGATATTGAATCAGAATTTTTTGATTTTCCAGGC ATAGCAAAAGTAGAGAAAAGTGATAATGCCTATATTTTAACAGTCTCAGAGAATTTTGAGGAAATTTATCAAAGATGTAA AAGTAAACCTCACTTTACCCTTGATGTAATTGAACAGAGTCTCGAAGACATTCTAATTAATACTTCTGGGAGGTAA
Upstream 100 bases:
>100_bases GCATATCATTTGAACTTATCCGAGGAAGAAATCAGATCTTTATTTGAGGAAAAACTATCTAGTTGGAAATCAAAATTTAA TTAAAAGAGGTGGAATTTAA
Downstream 100 bases:
>100_bases ATATATGATTAAAACTCTTTTGAGAAAAGAAATAATAGAAAATAAATGGATTCTGATAATTGGATTACTGTTTTTTACTG TTTCCGCAGCTATAGTGGTG
Product: ABC transporter related
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 291; Mature: 290
Protein sequence:
>291_residues MSAICFENVSKKFGDSKIIDDFNLTIERGTVFGFIGPNGAGKTTTIKMLTGLIKPTTGSIKILNQDISNGYQILDHIGYV SEESNLYNYMTFQGILNFAKGFYTNWDPSLVDKYTEFFRLPLNQPIKEFSKGMKVKVSLVLALAHNPKILILDEPTSGLD PIFRREFLNVLVEEMTQSEKTIFFSSHIIDDVERIADQIGIINDGRLLKVRDMDELKTNEKKIRVVFQRDIESEFFDFPG IAKVEKSDNAYILTVSENFEEIYQRCKSKPHFTLDVIEQSLEDILINTSGR
Sequences:
>Translated_291_residues MSAICFENVSKKFGDSKIIDDFNLTIERGTVFGFIGPNGAGKTTTIKMLTGLIKPTTGSIKILNQDISNGYQILDHIGYV SEESNLYNYMTFQGILNFAKGFYTNWDPSLVDKYTEFFRLPLNQPIKEFSKGMKVKVSLVLALAHNPKILILDEPTSGLD PIFRREFLNVLVEEMTQSEKTIFFSSHIIDDVERIADQIGIINDGRLLKVRDMDELKTNEKKIRVVFQRDIESEFFDFPG IAKVEKSDNAYILTVSENFEEIYQRCKSKPHFTLDVIEQSLEDILINTSGR >Mature_290_residues SAICFENVSKKFGDSKIIDDFNLTIERGTVFGFIGPNGAGKTTTIKMLTGLIKPTTGSIKILNQDISNGYQILDHIGYVS EESNLYNYMTFQGILNFAKGFYTNWDPSLVDKYTEFFRLPLNQPIKEFSKGMKVKVSLVLALAHNPKILILDEPTSGLDP IFRREFLNVLVEEMTQSEKTIFFSSHIIDDVERIADQIGIINDGRLLKVRDMDELKTNEKKIRVVFQRDIESEFFDFPGI AKVEKSDNAYILTVSENFEEIYQRCKSKPHFTLDVIEQSLEDILINTSGR
Specific function: Unknown
COG id: COG1131
COG function: function code V; ABC-type multidrug transport system, ATPase component
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 ABC transporter domain [H]
Homologues:
Organism=Homo sapiens, GI27477115, Length=294, Percent_Identity=28.2312925170068, Blast_Score=119, Evalue=3e-27, Organism=Homo sapiens, GI27436953, Length=218, Percent_Identity=27.5229357798165, Blast_Score=116, Evalue=2e-26, Organism=Homo sapiens, GI6005701, Length=293, Percent_Identity=25.5972696245734, Blast_Score=111, Evalue=8e-25, Organism=Homo sapiens, GI153792144, Length=222, Percent_Identity=29.7297297297297, Blast_Score=111, Evalue=9e-25, Organism=Homo sapiens, GI105990541, Length=224, Percent_Identity=30.8035714285714, Blast_Score=110, Evalue=1e-24, Organism=Homo sapiens, GI116734710, Length=217, Percent_Identity=34.1013824884793, Blast_Score=109, Evalue=3e-24, Organism=Homo sapiens, GI30795238, Length=216, Percent_Identity=30.5555555555556, Blast_Score=108, Evalue=4e-24, Organism=Homo sapiens, GI27881501, Length=216, Percent_Identity=30.5555555555556, Blast_Score=108, Evalue=5e-24, Organism=Homo sapiens, GI21536376, Length=217, Percent_Identity=32.258064516129, Blast_Score=108, Evalue=8e-24, Organism=Homo sapiens, GI45446740, Length=212, Percent_Identity=31.1320754716981, Blast_Score=108, Evalue=8e-24, Organism=Homo sapiens, GI47078218, Length=212, Percent_Identity=31.1320754716981, Blast_Score=108, Evalue=8e-24, Organism=Homo sapiens, GI31657092, Length=212, Percent_Identity=31.6037735849057, Blast_Score=100, Evalue=1e-21, Organism=Homo sapiens, GI150417984, Length=195, Percent_Identity=31.7948717948718, Blast_Score=96, Evalue=3e-20, Organism=Homo sapiens, GI27262624, Length=203, Percent_Identity=26.1083743842365, Blast_Score=96, Evalue=4e-20, Organism=Homo sapiens, GI27262626, Length=203, Percent_Identity=26.1083743842365, Blast_Score=96, Evalue=4e-20, Organism=Homo sapiens, GI255708477, Length=226, Percent_Identity=30.5309734513274, Blast_Score=78, Evalue=9e-15, Organism=Homo sapiens, GI9961252, Length=217, Percent_Identity=29.4930875576037, Blast_Score=78, Evalue=1e-14, Organism=Homo sapiens, GI4505771, Length=217, Percent_Identity=29.4930875576037, Blast_Score=77, Evalue=1e-14, Organism=Homo sapiens, GI171184400, Length=244, Percent_Identity=27.0491803278689, Blast_Score=77, Evalue=2e-14, Organism=Homo sapiens, GI9961250, Length=217, Percent_Identity=29.4930875576037, Blast_Score=77, Evalue=2e-14, Organism=Homo sapiens, GI42741659, Length=211, Percent_Identity=28.436018957346, Blast_Score=74, Evalue=1e-13, Organism=Homo sapiens, GI9955963, Length=217, Percent_Identity=27.6497695852535, Blast_Score=73, Evalue=3e-13, Organism=Homo sapiens, GI156105685, Length=230, Percent_Identity=25.6521739130435, Blast_Score=69, Evalue=4e-12, Organism=Homo sapiens, GI148612844, Length=218, Percent_Identity=25.2293577981651, Blast_Score=67, Evalue=2e-11, Organism=Escherichia coli, GI87081782, Length=225, Percent_Identity=35.5555555555556, Blast_Score=143, Evalue=2e-35, Organism=Escherichia coli, GI48994943, Length=220, Percent_Identity=35, Blast_Score=130, Evalue=1e-31, Organism=Escherichia coli, GI1786319, Length=224, Percent_Identity=29.9107142857143, Blast_Score=106, Evalue=2e-24, Organism=Escherichia coli, GI1789032, Length=254, Percent_Identity=31.496062992126, Blast_Score=102, Evalue=4e-23, Organism=Escherichia coli, GI1786253, Length=202, Percent_Identity=29.2079207920792, Blast_Score=99, Evalue=4e-22, Organism=Escherichia coli, GI1789672, Length=234, Percent_Identity=27.7777777777778, Blast_Score=97, Evalue=1e-21, Organism=Escherichia coli, GI48995001, Length=245, Percent_Identity=28.9795918367347, Blast_Score=97, Evalue=2e-21, Organism=Escherichia coli, GI87081709, Length=273, Percent_Identity=25.6410256410256, Blast_Score=96, Evalue=3e-21, Organism=Escherichia coli, GI1788761, Length=235, Percent_Identity=26.8085106382979, Blast_Score=96, Evalue=3e-21, Organism=Escherichia coli, GI1788450, Length=220, Percent_Identity=28.1818181818182, Blast_Score=96, Evalue=3e-21, Organism=Escherichia coli, GI1786398, Length=313, Percent_Identity=26.8370607028754, Blast_Score=95, Evalue=7e-21, Organism=Escherichia coli, GI87081791, Length=218, Percent_Identity=27.0642201834862, Blast_Score=94, Evalue=1e-20, Organism=Escherichia coli, GI1787712, Length=214, Percent_Identity=26.6355140186916, Blast_Score=91, Evalue=7e-20, Organism=Escherichia coli, GI1789593, Length=245, Percent_Identity=24.8979591836735, Blast_Score=90, Evalue=1e-19, Organism=Escherichia coli, GI1788540, Length=226, Percent_Identity=33.1858407079646, Blast_Score=89, Evalue=3e-19, Organism=Escherichia coli, GI1788210, Length=243, Percent_Identity=29.2181069958848, Blast_Score=89, Evalue=3e-19, Organism=Escherichia coli, GI1790467, Length=217, Percent_Identity=26.7281105990783, Blast_Score=87, Evalue=2e-18, Organism=Escherichia coli, GI1790739, Length=244, Percent_Identity=23.3606557377049, Blast_Score=86, Evalue=3e-18, Organism=Escherichia coli, GI1788165, Length=162, Percent_Identity=33.9506172839506, Blast_Score=86, Evalue=4e-18, Organism=Escherichia coli, GI87082268, Length=226, Percent_Identity=27.8761061946903, Blast_Score=83, Evalue=2e-17, Organism=Escherichia coli, GI1789864, Length=238, Percent_Identity=26.890756302521, Blast_Score=82, Evalue=5e-17, Organism=Escherichia coli, GI1787370, Length=211, Percent_Identity=25.5924170616114, Blast_Score=82, Evalue=5e-17, Organism=Escherichia coli, GI1786698, Length=199, Percent_Identity=26.6331658291457, Blast_Score=82, Evalue=6e-17, Organism=Escherichia coli, GI1790525, Length=251, Percent_Identity=25.0996015936255, Blast_Score=81, Evalue=8e-17, Organism=Escherichia coli, GI1786975, Length=232, Percent_Identity=28.0172413793103, Blast_Score=80, Evalue=2e-16, Organism=Escherichia coli, GI1789751, Length=175, Percent_Identity=32.5714285714286, Blast_Score=80, Evalue=2e-16, Organism=Escherichia coli, GI1786872, Length=216, Percent_Identity=25.462962962963, Blast_Score=72, Evalue=3e-14, Organism=Escherichia coli, GI87082267, Length=211, Percent_Identity=22.7488151658768, Blast_Score=71, Evalue=7e-14, Organism=Escherichia coli, GI1787089, Length=227, Percent_Identity=23.7885462555066, Blast_Score=71, Evalue=7e-14, Organism=Escherichia coli, GI2367384, Length=211, Percent_Identity=29.3838862559242, Blast_Score=71, Evalue=7e-14, Organism=Escherichia coli, GI1787792, Length=226, Percent_Identity=26.1061946902655, Blast_Score=71, Evalue=8e-14, Organism=Escherichia coli, GI1788053, Length=228, Percent_Identity=25.4385964912281, Blast_Score=71, Evalue=8e-14, Organism=Escherichia coli, GI1786803, Length=227, Percent_Identity=23.3480176211454, Blast_Score=70, Evalue=1e-13, Organism=Escherichia coli, GI1790190, Length=242, Percent_Identity=23.5537190082645, Blast_Score=68, Evalue=7e-13, Organism=Escherichia coli, GI1787547, Length=204, Percent_Identity=26.4705882352941, Blast_Score=67, Evalue=1e-12, Organism=Escherichia coli, GI1788472, Length=243, Percent_Identity=23.0452674897119, Blast_Score=67, Evalue=2e-12, Organism=Escherichia coli, GI1787041, Length=206, Percent_Identity=26.2135922330097, Blast_Score=65, Evalue=4e-12, Organism=Escherichia coli, GI1789586, Length=231, Percent_Identity=24.6753246753247, Blast_Score=64, Evalue=1e-11, Organism=Caenorhabditis elegans, GI17510237, Length=229, Percent_Identity=29.2576419213974, Blast_Score=107, Evalue=5e-24, Organism=Caenorhabditis elegans, GI115533608, Length=230, Percent_Identity=28.695652173913, Blast_Score=102, Evalue=3e-22, Organism=Caenorhabditis elegans, GI17565586, Length=200, Percent_Identity=31.5, Blast_Score=102, Evalue=3e-22, Organism=Caenorhabditis elegans, GI71983516, Length=229, Percent_Identity=29.6943231441048, Blast_Score=100, Evalue=7e-22, Organism=Caenorhabditis elegans, GI71983523, Length=229, Percent_Identity=29.6943231441048, Blast_Score=100, Evalue=7e-22, Organism=Caenorhabditis elegans, GI71983510, Length=229, Percent_Identity=29.6943231441048, Blast_Score=100, Evalue=8e-22, Organism=Caenorhabditis elegans, GI17565938, Length=240, Percent_Identity=26.6666666666667, Blast_Score=75, Evalue=6e-14, Organism=Caenorhabditis elegans, GI17558664, Length=212, Percent_Identity=25, Blast_Score=74, Evalue=8e-14, Organism=Caenorhabditis elegans, GI115535101, Length=235, Percent_Identity=25.531914893617, Blast_Score=72, Evalue=3e-13, Organism=Caenorhabditis elegans, GI17533971, Length=217, Percent_Identity=26.2672811059908, Blast_Score=72, Evalue=3e-13, Organism=Caenorhabditis elegans, GI25146777, Length=219, Percent_Identity=26.9406392694064, Blast_Score=72, Evalue=3e-13, Organism=Caenorhabditis elegans, GI71996809, Length=233, Percent_Identity=23.6051502145923, Blast_Score=71, Evalue=5e-13, Organism=Caenorhabditis elegans, GI193208177, Length=251, Percent_Identity=25.8964143426295, Blast_Score=71, Evalue=6e-13, Organism=Caenorhabditis elegans, GI17543740, Length=217, Percent_Identity=27.1889400921659, Blast_Score=71, Evalue=7e-13, Organism=Caenorhabditis elegans, GI193211015, Length=234, Percent_Identity=24.7863247863248, Blast_Score=70, Evalue=1e-12, Organism=Caenorhabditis elegans, GI193211017, Length=234, Percent_Identity=24.7863247863248, Blast_Score=70, Evalue=1e-12, Organism=Caenorhabditis elegans, GI17569143, Length=206, Percent_Identity=26.2135922330097, Blast_Score=70, Evalue=1e-12, Organism=Caenorhabditis elegans, GI212646699, Length=249, Percent_Identity=25.3012048192771, Blast_Score=69, Evalue=2e-12, Organism=Caenorhabditis elegans, GI17567269, Length=225, Percent_Identity=25.7777777777778, Blast_Score=69, Evalue=2e-12, Organism=Caenorhabditis elegans, GI193202349, Length=232, Percent_Identity=25, Blast_Score=69, Evalue=3e-12, Organism=Caenorhabditis elegans, GI17567265, Length=213, Percent_Identity=24.8826291079812, Blast_Score=64, Evalue=7e-11, Organism=Saccharomyces cerevisiae, GI6324985, Length=219, Percent_Identity=28.310502283105, Blast_Score=73, Evalue=5e-14, Organism=Drosophila melanogaster, GI85725262, Length=226, Percent_Identity=30.9734513274336, Blast_Score=119, Evalue=2e-27, Organism=Drosophila melanogaster, GI221512771, Length=215, Percent_Identity=32.5581395348837, Blast_Score=110, Evalue=8e-25, Organism=Drosophila melanogaster, GI28574150, Length=232, Percent_Identity=33.6206896551724, Blast_Score=107, Evalue=8e-24, Organism=Drosophila melanogaster, GI116007328, Length=232, Percent_Identity=33.6206896551724, Blast_Score=107, Evalue=1e-23, Organism=Drosophila melanogaster, GI281362751, Length=210, Percent_Identity=30.4761904761905, Blast_Score=106, Evalue=2e-23, Organism=Drosophila melanogaster, GI24650853, Length=211, Percent_Identity=30.3317535545024, Blast_Score=106, Evalue=2e-23, Organism=Drosophila melanogaster, GI24643674, Length=206, Percent_Identity=31.0679611650485, Blast_Score=105, Evalue=2e-23, Organism=Drosophila melanogaster, GI24650855, Length=211, Percent_Identity=30.3317535545024, Blast_Score=105, Evalue=3e-23, Organism=Drosophila melanogaster, GI24582014, Length=218, Percent_Identity=28.4403669724771, Blast_Score=103, Evalue=1e-22, Organism=Drosophila melanogaster, GI24582012, Length=218, Percent_Identity=28.4403669724771, Blast_Score=103, Evalue=1e-22, Organism=Drosophila melanogaster, GI24648314, Length=219, Percent_Identity=29.6803652968037, Blast_Score=99, Evalue=2e-21, Organism=Drosophila melanogaster, GI24666092, Length=223, Percent_Identity=29.1479820627803, Blast_Score=98, Evalue=5e-21, Organism=Drosophila melanogaster, GI28573573, Length=224, Percent_Identity=27.6785714285714, Blast_Score=93, Evalue=2e-19, Organism=Drosophila melanogaster, GI28573571, Length=224, Percent_Identity=27.6785714285714, Blast_Score=93, Evalue=2e-19, Organism=Drosophila melanogaster, GI23397593, Length=252, Percent_Identity=28.968253968254, Blast_Score=80, Evalue=2e-15, Organism=Drosophila melanogaster, GI221500365, Length=204, Percent_Identity=24.0196078431373, Blast_Score=79, Evalue=3e-15, Organism=Drosophila melanogaster, GI116007184, Length=204, Percent_Identity=24.0196078431373, Blast_Score=79, Evalue=3e-15, Organism=Drosophila melanogaster, GI281363262, Length=236, Percent_Identity=29.2372881355932, Blast_Score=71, Evalue=8e-13, Organism=Drosophila melanogaster, GI17136662, Length=211, Percent_Identity=27.0142180094787, Blast_Score=71, Evalue=9e-13, Organism=Drosophila melanogaster, GI24653245, Length=236, Percent_Identity=29.2372881355932, Blast_Score=70, Evalue=1e-12, Organism=Drosophila melanogaster, GI28571209, Length=226, Percent_Identity=24.7787610619469, Blast_Score=69, Evalue=5e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003439 - InterPro: IPR017871 - InterPro: IPR003593 [H]
Pfam domain/function: PF00005 ABC_tran [H]
EC number: NA
Molecular weight: Translated: 33208; Mature: 33077
Theoretical pI: Translated: 4.98; Mature: 4.98
Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSAICFENVSKKFGDSKIIDDFNLTIERGTVFGFIGPNGAGKTTTIKMLTGLIKPTTGSI CCCHHHHHHHHHCCCCCEEECCCEEEECCEEEEEECCCCCCCHHHHHHHHHHHCCCCCCE KILNQDISNGYQILDHIGYVSEESNLYNYMTFQGILNFAKGFYTNWDPSLVDKYTEFFRL EEEECHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHC PLNQPIKEFSKGMKVKVSLVLALAHNPKILILDEPTSGLDPIFRREFLNVLVEEMTQSEK CCCCHHHHHHCCCEEEEEEEEEEECCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCC TIFFSSHIIDDVERIADQIGIINDGRLLKVRDMDELKTNEKKIRVVFQRDIESEFFDFPG EEEEHHHHHHHHHHHHHHHCCCCCCCEEEECCHHHHHCCCHHEEEEEHHHHHHHHHCCCC IAKVEKSDNAYILTVSENFEEIYQRCKSKPHFTLDVIEQSLEDILINTSGR CEEEECCCCEEEEEECCCHHHHHHHHCCCCCEEHHHHHHHHHHHHCCCCCC >Mature Secondary Structure SAICFENVSKKFGDSKIIDDFNLTIERGTVFGFIGPNGAGKTTTIKMLTGLIKPTTGSI CCHHHHHHHHHCCCCCEEECCCEEEECCEEEEEECCCCCCCHHHHHHHHHHHCCCCCCE KILNQDISNGYQILDHIGYVSEESNLYNYMTFQGILNFAKGFYTNWDPSLVDKYTEFFRL EEEECHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHC PLNQPIKEFSKGMKVKVSLVLALAHNPKILILDEPTSGLDPIFRREFLNVLVEEMTQSEK CCCCHHHHHHCCCEEEEEEEEEEECCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCC TIFFSSHIIDDVERIADQIGIINDGRLLKVRDMDELKTNEKKIRVVFQRDIESEFFDFPG EEEEHHHHHHHHHHHHHHHCCCCCCCEEEECCHHHHHCCCHHEEEEEHHHHHHHHHCCCC IAKVEKSDNAYILTVSENFEEIYQRCKSKPHFTLDVIEQSLEDILINTSGR CEEEECCCCEEEEEECCCHHHHHHHHCCCCCEEHHHHHHHHHHHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 8969498; 9384377 [H]