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The map label for this gene is ytrA [H]

Identifier: 188585365

GI number: 188585365

Start: 760454

End: 760870

Strand: Reverse

Name: ytrA [H]

Synonym: Nther_0732

Alternate gene names: 188585365

Gene position: 760870-760454 (Counterclockwise)

Preceding gene: 188585366

Following gene: 188585364

Centisome position: 24.04

GC content: 36.93

Gene sequence:

>417_bases
ATGATTCAACTAGACTTGACAGACGGCAGACCATTGTATGAACAAATCAAAGAAAAGATTAAGTTTTTAATTATTCGGGG
AGTTTTAAAACCCGATGAAAAAGTCCCTTCAGTACGAGAGCTGGCCCAAACCTTGACAATAAATCCTAATACCATTCAAA
AAGCCTACAAAGATTTGGAAACGGAAGGGTTTATTTACTCTGTCAGGGGCCGTGGTAGTTTCGTAGCTAACCTGGAGAAT
GTAACCAATTTCAAGAGAAAGGATGATTTATTAAAAGAATTAAATAAAATAGTACTCGAGCTCAAGTATTTAGATGTAAC
CAAAAATGAGTTAGTGGCTGTAATTGAAAACACATACGCCGATAATCATGAAAACAAGAGCCAAAAAGGCTCTGAGGGGG
AGGATCTAGATGATTGA

Upstream 100 bases:

>100_bases
TGAACCAGGGTTTTTTATTTTTGCTTGACAAAATATAACGTTCAGGGTAAGATTACTGTAGTAAGTGTATTAAAACTATT
AATACAGTTAGGTGGTTATT

Downstream 100 bases:

>100_bases
AATAAATAATCTTACTAAAAGTTTCGGGGATATTAAAGCCCTGGATAATATCAGTACAACCATAGAAACCGGTTCTATCT
ATGGTTTACTGGGTCCCAAT

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 138; Mature: 138

Protein sequence:

>138_residues
MIQLDLTDGRPLYEQIKEKIKFLIIRGVLKPDEKVPSVRELAQTLTINPNTIQKAYKDLETEGFIYSVRGRGSFVANLEN
VTNFKRKDDLLKELNKIVLELKYLDVTKNELVAVIENTYADNHENKSQKGSEGEDLDD

Sequences:

>Translated_138_residues
MIQLDLTDGRPLYEQIKEKIKFLIIRGVLKPDEKVPSVRELAQTLTINPNTIQKAYKDLETEGFIYSVRGRGSFVANLEN
VTNFKRKDDLLKELNKIVLELKYLDVTKNELVAVIENTYADNHENKSQKGSEGEDLDD
>Mature_138_residues
MIQLDLTDGRPLYEQIKEKIKFLIIRGVLKPDEKVPSVRELAQTLTINPNTIQKAYKDLETEGFIYSVRGRGSFVANLEN
VTNFKRKDDLLKELNKIVLELKYLDVTKNELVAVIENTYADNHENKSQKGSEGEDLDD

Specific function: Negatively regulates ABC transporter complex ytrBCDEF that plays a role in acetoin utilization during stationary phase and sporulation [H]

COG id: COG1725

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000524
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 15840; Mature: 15840

Theoretical pI: Translated: 4.89; Mature: 4.89

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.7 %Met     (Translated Protein)
0.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
0.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIQLDLTDGRPLYEQIKEKIKFLIIRGVLKPDEKVPSVRELAQTLTINPNTIQKAYKDLE
CEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHCC
TEGFIYSVRGRGSFVANLENVTNFKRKDDLLKELNKIVLELKYLDVTKNELVAVIENTYA
CCCEEEEECCCCCEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHC
DNHENKSQKGSEGEDLDD
CCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MIQLDLTDGRPLYEQIKEKIKFLIIRGVLKPDEKVPSVRELAQTLTINPNTIQKAYKDLE
CEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHCC
TEGFIYSVRGRGSFVANLENVTNFKRKDDLLKELNKIVLELKYLDVTKNELVAVIENTYA
CCCEEEEECCCCCEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHC
DNHENKSQKGSEGEDLDD
CCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9387221; 9384377 [H]