BacMap

Definition	Natranaerobius thermophilus JW/NM-WN-LF, complete genome.
Accession	NC_010718
Length	3,165,557

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The map label for this gene is ytrB [H]

Identifier: 188585364

GI number: 188585364

Start: 759562

End: 760461

Strand: Reverse

Name: ytrB [H]

Synonym: Nther_0731

Alternate gene names: 188585364

Gene position: 760461-759562 (Counterclockwise)

Preceding gene: 188585365

Following gene: 188585363

Centisome position: 24.02

GC content: 34.33

Gene sequence:

>900_bases
ATGATTGAAATAAATAATCTTACTAAAAGTTTCGGGGATATTAAAGCCCTGGATAATATCAGTACAACCATAGAAACCGG
TTCTATCTATGGTTTACTGGGTCCCAATGGTGCTGGTAAGACAACATTAATTAAACATATCGCAGGCATTTATCGTCCAG
ATAGTGGTTCTATCGACATCAAGGATAAATCAGTTTATGAAAATCCCGAAATCAAATCATCACTCTATTATATTCCTGAT
GATCTGTACTTTTTTAATCAATATAGCATCAAGGAAACTGCCAAGTTTTACGCTAGAATGTATCCTAGTTGGAATCATGA
AAGATTTAAAAAATTACAGGACTATTTTCCAATCGATATCAACAAAAGGGTTACAAAACTGTCCAAAGGAATGCAAAAAC
AAGTTGCCTTTTGGCTAGGTATCTGTACTATGCCAGATATCATGATCTTAGATGAACCGGTAGATGGTTTAGACCCGGTC
ATGCGTAAAAAAGTATGGAATTTAATGCTTCAAGATGTAGCCGAAAGAGATACTACAATATTAGTTTCATCACATAATTT
AAGAGAGCTAGAAGAGATTTGCTCACATATCGGTATTATCTATAATGGCAAAATTGTAGTGGAAAGGGAACTAGACAATT
TAAAAACTGATATTCACAAAATTCAAGTAGCCTTTGATGACCTCTCCCCTACTGAACTGCTCCAGGATTTTGAAGTCCTT
CACCACTCTAAAAATGGAAGTATAAATCTCTTAATAGTCAGGGGAGATAAAGAAGAAATCTTGTCTCAATTACAACAGGC
CAATCCATTAATTCTCGATCTTTTGTCTTTAACATTGGAAGAAATTTTCATTTACGAGCTAGGAGGTAAAGGTTATGAAA
TCGATACTACCATTATTTAA

Upstream 100 bases:

>100_bases
TTAGATGTAACCAAAAATGAGTTAGTGGCTGTAATTGAAAACACATACGCCGATAATCATGAAAACAAGAGCCAAAAAGG
CTCTGAGGGGGAGGATCTAG

Downstream 100 bases:

>100_bases
TAAAGGGCTGGTATTCAGTAACTTAAAAAGGTTTTGGTGGGTAAGTGCCCTATATAGTTTATTGCTTTTTTTCATAGTAC
CTTTTCAGATGATAATTCAG

Product: ABC transporter related

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 299; Mature: 299

Protein sequence:

>299_residues
MIEINNLTKSFGDIKALDNISTTIETGSIYGLLGPNGAGKTTLIKHIAGIYRPDSGSIDIKDKSVYENPEIKSSLYYIPD
DLYFFNQYSIKETAKFYARMYPSWNHERFKKLQDYFPIDINKRVTKLSKGMQKQVAFWLGICTMPDIMILDEPVDGLDPV
MRKKVWNLMLQDVAERDTTILVSSHNLRELEEICSHIGIIYNGKIVVERELDNLKTDIHKIQVAFDDLSPTELLQDFEVL
HHSKNGSINLLIVRGDKEEILSQLQQANPLILDLLSLTLEEIFIYELGGKGYEIDTTII

Sequences:

>Translated_299_residues
MIEINNLTKSFGDIKALDNISTTIETGSIYGLLGPNGAGKTTLIKHIAGIYRPDSGSIDIKDKSVYENPEIKSSLYYIPD
DLYFFNQYSIKETAKFYARMYPSWNHERFKKLQDYFPIDINKRVTKLSKGMQKQVAFWLGICTMPDIMILDEPVDGLDPV
MRKKVWNLMLQDVAERDTTILVSSHNLRELEEICSHIGIIYNGKIVVERELDNLKTDIHKIQVAFDDLSPTELLQDFEVL
HHSKNGSINLLIVRGDKEEILSQLQQANPLILDLLSLTLEEIFIYELGGKGYEIDTTII
>Mature_299_residues
MIEINNLTKSFGDIKALDNISTTIETGSIYGLLGPNGAGKTTLIKHIAGIYRPDSGSIDIKDKSVYENPEIKSSLYYIPD
DLYFFNQYSIKETAKFYARMYPSWNHERFKKLQDYFPIDINKRVTKLSKGMQKQVAFWLGICTMPDIMILDEPVDGLDPV
MRKKVWNLMLQDVAERDTTILVSSHNLRELEEICSHIGIIYNGKIVVERELDNLKTDIHKIQVAFDDLSPTELLQDFEVL
HHSKNGSINLLIVRGDKEEILSQLQQANPLILDLLSLTLEEIFIYELGGKGYEIDTTII

Specific function: Part of the ABC transporter complex YtrBCDEF that plays a role in acetoin utilization during stationary phase and sporulation [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Peripheral membrane protein; Cytoplasmic side (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transporter domain [H]

Homologues:

Organism=Homo sapiens, GI27881501, Length=329, Percent_Identity=28.5714285714286, Blast_Score=109, Evalue=3e-24,
Organism=Homo sapiens, GI30795238, Length=329, Percent_Identity=28.5714285714286, Blast_Score=109, Evalue=4e-24,
Organism=Homo sapiens, GI27436953, Length=210, Percent_Identity=28.5714285714286, Blast_Score=108, Evalue=7e-24,
Organism=Homo sapiens, GI45446740, Length=211, Percent_Identity=32.7014218009479, Blast_Score=104, Evalue=8e-23,
Organism=Homo sapiens, GI47078218, Length=211, Percent_Identity=32.7014218009479, Blast_Score=104, Evalue=8e-23,
Organism=Homo sapiens, GI21536376, Length=216, Percent_Identity=30.0925925925926, Blast_Score=100, Evalue=1e-21,
Organism=Homo sapiens, GI153792144, Length=217, Percent_Identity=26.2672811059908, Blast_Score=97, Evalue=2e-20,
Organism=Homo sapiens, GI27477115, Length=214, Percent_Identity=26.6355140186916, Blast_Score=95, Evalue=9e-20,
Organism=Homo sapiens, GI27262624, Length=237, Percent_Identity=27.0042194092827, Blast_Score=94, Evalue=1e-19,
Organism=Homo sapiens, GI27262626, Length=237, Percent_Identity=27.0042194092827, Blast_Score=94, Evalue=1e-19,
Organism=Homo sapiens, GI31657092, Length=216, Percent_Identity=27.3148148148148, Blast_Score=92, Evalue=4e-19,
Organism=Homo sapiens, GI6005701, Length=214, Percent_Identity=26.6355140186916, Blast_Score=92, Evalue=7e-19,
Organism=Homo sapiens, GI105990541, Length=248, Percent_Identity=25.8064516129032, Blast_Score=91, Evalue=9e-19,
Organism=Homo sapiens, GI116734710, Length=214, Percent_Identity=27.5700934579439, Blast_Score=91, Evalue=1e-18,
Organism=Homo sapiens, GI150417984, Length=212, Percent_Identity=28.7735849056604, Blast_Score=87, Evalue=3e-17,
Organism=Homo sapiens, GI9955963, Length=218, Percent_Identity=27.5229357798165, Blast_Score=69, Evalue=5e-12,
Organism=Escherichia coli, GI87081782, Length=252, Percent_Identity=30.5555555555556, Blast_Score=130, Evalue=1e-31,
Organism=Escherichia coli, GI1786319, Length=236, Percent_Identity=29.6610169491525, Blast_Score=110, Evalue=1e-25,
Organism=Escherichia coli, GI48994943, Length=218, Percent_Identity=27.5229357798165, Blast_Score=102, Evalue=4e-23,
Organism=Escherichia coli, GI1787029, Length=217, Percent_Identity=29.0322580645161, Blast_Score=96, Evalue=2e-21,
Organism=Escherichia coli, GI48995001, Length=271, Percent_Identity=26.5682656826568, Blast_Score=91, Evalue=8e-20,
Organism=Escherichia coli, GI1788165, Length=191, Percent_Identity=29.8429319371728, Blast_Score=91, Evalue=1e-19,
Organism=Escherichia coli, GI87082268, Length=223, Percent_Identity=26.457399103139, Blast_Score=90, Evalue=2e-19,
Organism=Escherichia coli, GI87081791, Length=212, Percent_Identity=27.3584905660377, Blast_Score=89, Evalue=3e-19,
Organism=Escherichia coli, GI87081709, Length=210, Percent_Identity=25.7142857142857, Blast_Score=89, Evalue=3e-19,
Organism=Escherichia coli, GI1788472, Length=232, Percent_Identity=27.1551724137931, Blast_Score=88, Evalue=7e-19,
Organism=Escherichia coli, GI1789593, Length=243, Percent_Identity=26.3374485596708, Blast_Score=88, Evalue=9e-19,
Organism=Escherichia coli, GI1788761, Length=220, Percent_Identity=26.8181818181818, Blast_Score=88, Evalue=9e-19,
Organism=Escherichia coli, GI1786398, Length=231, Percent_Identity=27.2727272727273, Blast_Score=87, Evalue=1e-18,
Organism=Escherichia coli, GI1787712, Length=211, Percent_Identity=25.5924170616114, Blast_Score=87, Evalue=1e-18,
Organism=Escherichia coli, GI1787792, Length=214, Percent_Identity=27.5700934579439, Blast_Score=87, Evalue=1e-18,
Organism=Escherichia coli, GI1788450, Length=215, Percent_Identity=25.1162790697674, Blast_Score=86, Evalue=3e-18,
Organism=Escherichia coli, GI1790190, Length=232, Percent_Identity=25.8620689655172, Blast_Score=81, Evalue=9e-17,
Organism=Escherichia coli, GI1788540, Length=191, Percent_Identity=30.8900523560209, Blast_Score=79, Evalue=3e-16,
Organism=Escherichia coli, GI1786563, Length=215, Percent_Identity=26.046511627907, Blast_Score=79, Evalue=3e-16,
Organism=Escherichia coli, GI1789672, Length=228, Percent_Identity=24.5614035087719, Blast_Score=79, Evalue=4e-16,
Organism=Escherichia coli, GI1790544, Length=244, Percent_Identity=25.4098360655738, Blast_Score=79, Evalue=4e-16,
Organism=Escherichia coli, GI1789891, Length=204, Percent_Identity=25, Blast_Score=79, Evalue=4e-16,
Organism=Escherichia coli, GI1786872, Length=216, Percent_Identity=27.3148148148148, Blast_Score=78, Evalue=6e-16,
Organism=Escherichia coli, GI1787370, Length=214, Percent_Identity=23.8317757009346, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI2367384, Length=214, Percent_Identity=29.4392523364486, Blast_Score=77, Evalue=2e-15,
Organism=Escherichia coli, GI1790525, Length=226, Percent_Identity=25.2212389380531, Blast_Score=76, Evalue=3e-15,
Organism=Escherichia coli, GI1790739, Length=225, Percent_Identity=23.1111111111111, Blast_Score=75, Evalue=4e-15,
Organism=Escherichia coli, GI1790467, Length=166, Percent_Identity=23.4939759036145, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI1789751, Length=211, Percent_Identity=27.4881516587678, Blast_Score=72, Evalue=4e-14,
Organism=Escherichia coli, GI87082267, Length=212, Percent_Identity=25, Blast_Score=72, Evalue=5e-14,
Organism=Escherichia coli, GI1789032, Length=209, Percent_Identity=26.3157894736842, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI1787547, Length=243, Percent_Identity=22.2222222222222, Blast_Score=68, Evalue=6e-13,
Organism=Escherichia coli, GI1789962, Length=207, Percent_Identity=25.1207729468599, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1787143, Length=245, Percent_Identity=25.3061224489796, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1788210, Length=220, Percent_Identity=23.6363636363636, Blast_Score=62, Evalue=3e-11,
Organism=Escherichia coli, GI1787041, Length=170, Percent_Identity=30.5882352941176, Blast_Score=62, Evalue=5e-11,
Organism=Caenorhabditis elegans, GI17510237, Length=217, Percent_Identity=27.6497695852535, Blast_Score=105, Evalue=3e-23,
Organism=Caenorhabditis elegans, GI115533608, Length=212, Percent_Identity=27.3584905660377, Blast_Score=98, Evalue=7e-21,
Organism=Caenorhabditis elegans, GI17565586, Length=218, Percent_Identity=27.5229357798165, Blast_Score=96, Evalue=2e-20,
Organism=Caenorhabditis elegans, GI71983523, Length=216, Percent_Identity=27.3148148148148, Blast_Score=93, Evalue=1e-19,
Organism=Caenorhabditis elegans, GI71983510, Length=216, Percent_Identity=27.3148148148148, Blast_Score=93, Evalue=2e-19,
Organism=Caenorhabditis elegans, GI71983516, Length=216, Percent_Identity=27.3148148148148, Blast_Score=93, Evalue=2e-19,
Organism=Caenorhabditis elegans, GI25146777, Length=239, Percent_Identity=24.2677824267782, Blast_Score=72, Evalue=3e-13,
Organism=Caenorhabditis elegans, GI17558664, Length=205, Percent_Identity=23.9024390243902, Blast_Score=66, Evalue=2e-11,
Organism=Saccharomyces cerevisiae, GI6324498, Length=192, Percent_Identity=25.5208333333333, Blast_Score=62, Evalue=8e-11,
Organism=Drosophila melanogaster, GI24582014, Length=261, Percent_Identity=27.2030651340996, Blast_Score=111, Evalue=5e-25,
Organism=Drosophila melanogaster, GI24582012, Length=261, Percent_Identity=27.2030651340996, Blast_Score=111, Evalue=5e-25,
Organism=Drosophila melanogaster, GI24650855, Length=221, Percent_Identity=28.5067873303167, Blast_Score=110, Evalue=1e-24,
Organism=Drosophila melanogaster, GI24666092, Length=225, Percent_Identity=32.4444444444444, Blast_Score=110, Evalue=1e-24,
Organism=Drosophila melanogaster, GI24650853, Length=221, Percent_Identity=28.5067873303167, Blast_Score=110, Evalue=1e-24,
Organism=Drosophila melanogaster, GI281362751, Length=222, Percent_Identity=28.8288288288288, Blast_Score=108, Evalue=3e-24,
Organism=Drosophila melanogaster, GI85725262, Length=209, Percent_Identity=30.1435406698565, Blast_Score=102, Evalue=3e-22,
Organism=Drosophila melanogaster, GI28574150, Length=228, Percent_Identity=29.8245614035088, Blast_Score=102, Evalue=3e-22,
Organism=Drosophila melanogaster, GI116007328, Length=228, Percent_Identity=29.8245614035088, Blast_Score=102, Evalue=3e-22,
Organism=Drosophila melanogaster, GI24643674, Length=224, Percent_Identity=25.8928571428571, Blast_Score=100, Evalue=9e-22,
Organism=Drosophila melanogaster, GI28573573, Length=219, Percent_Identity=27.8538812785388, Blast_Score=96, Evalue=3e-20,
Organism=Drosophila melanogaster, GI28573571, Length=219, Percent_Identity=27.8538812785388, Blast_Score=96, Evalue=3e-20,
Organism=Drosophila melanogaster, GI221512771, Length=218, Percent_Identity=28.4403669724771, Blast_Score=92, Evalue=5e-19,
Organism=Drosophila melanogaster, GI221500365, Length=205, Percent_Identity=26.8292682926829, Blast_Score=90, Evalue=2e-18,
Organism=Drosophila melanogaster, GI116007184, Length=205, Percent_Identity=26.8292682926829, Blast_Score=90, Evalue=2e-18,
Organism=Drosophila melanogaster, GI24648314, Length=220, Percent_Identity=27.2727272727273, Blast_Score=87, Evalue=9e-18,
Organism=Drosophila melanogaster, GI21357907, Length=199, Percent_Identity=27.1356783919598, Blast_Score=70, Evalue=2e-12,
Organism=Drosophila melanogaster, GI24662800, Length=189, Percent_Identity=26.984126984127, Blast_Score=66, Evalue=2e-11,
Organism=Drosophila melanogaster, GI24659289, Length=232, Percent_Identity=28.0172413793103, Blast_Score=64, Evalue=9e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003439
- InterPro:   IPR003593 [H]

Pfam domain/function: PF00005 ABC_tran [H]

EC number: NA

Molecular weight: Translated: 34177; Mature: 34177

Theoretical pI: Translated: 4.88; Mature: 4.88

Prosite motif: PS50893 ABC_TRANSPORTER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIEINNLTKSFGDIKALDNISTTIETGSIYGLLGPNGAGKTTLIKHIAGIYRPDSGSIDI
CEEECCHHHHHHHHHHHCCCHHEEECCEEEEEECCCCCCHHHHHHHHHHHCCCCCCCEEE
KDKSVYENPEIKSSLYYIPDDLYFFNQYSIKETAKFYARMYPSWNHERFKKLQDYFPIDI
CCCCCCCCCCCCCCEEECCCCEEEECCCCHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCC
NKRVTKLSKGMQKQVAFWLGICTMPDIMILDEPVDGLDPVMRKKVWNLMLQDVAERDTTI
HHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCEE
LVSSHNLRELEEICSHIGIIYNGKIVVERELDNLKTDIHKIQVAFDDLSPTELLQDFEVL
EEECCCHHHHHHHHHHCCEEECCEEEEEECHHHHHHHHHHEEEEECCCCHHHHHHHHHHH
HHSKNGSINLLIVRGDKEEILSQLQQANPLILDLLSLTLEEIFIYELGGKGYEIDTTII
HCCCCCCEEEEEEECCHHHHHHHHHHCCHHHHHHHHHHHHHHEEEEECCCCEEEEEEEC
>Mature Secondary Structure
MIEINNLTKSFGDIKALDNISTTIETGSIYGLLGPNGAGKTTLIKHIAGIYRPDSGSIDI
CEEECCHHHHHHHHHHHCCCHHEEECCEEEEEECCCCCCHHHHHHHHHHHCCCCCCCEEE
KDKSVYENPEIKSSLYYIPDDLYFFNQYSIKETAKFYARMYPSWNHERFKKLQDYFPIDI
CCCCCCCCCCCCCCEEECCCCEEEECCCCHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCC
NKRVTKLSKGMQKQVAFWLGICTMPDIMILDEPVDGLDPVMRKKVWNLMLQDVAERDTTI
HHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCEE
LVSSHNLRELEEICSHIGIIYNGKIVVERELDNLKTDIHKIQVAFDDLSPTELLQDFEVL
EEECCCHHHHHHHHHHCCEEECCEEEEEECHHHHHHHHHHEEEEECCCCHHHHHHHHHHH
HHSKNGSINLLIVRGDKEEILSQLQQANPLILDLLSLTLEEIFIYELGGKGYEIDTTII
HCCCCCCEEEEEEECCHHHHHHHHHHCCHHHHHHHHHHHHHHEEEEECCCCEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9387221; 9384377 [H]