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The map label for this gene is sodC [H]

Identifier: 188585366

GI number: 188585366

Start: 761027

End: 761554

Strand: Reverse

Name: sodC [H]

Synonym: Nther_0733

Alternate gene names: 188585366

Gene position: 761554-761027 (Counterclockwise)

Preceding gene: 188585367

Following gene: 188585365

Centisome position: 24.06

GC content: 41.86

Gene sequence:

>528_bases
ATGTATGATACTCGAAATATTATCAAAGTGGCTATGGCGCGGATAAAGGGTGGCTCATTAGCACCTGATCTCAAGGGAAT
CGTCACTTTTGACAGTGTTAAAAATGGTACAGTAATCTGTGCCGATATAGAAGGGCTACCATCTTTTCAGAGGGAATCTC
ATCAGCCTCCAATAGGGCCTCACGGTTTTCATCTTCACGAAATTGGTACCTGTAAGGAAGGCAATCCCGAAGATCCTTTT
CAAGCAGCAGGGGGACATTGGGATCCAGATAACCAACCTCACGGAAACCACGCTGGTGATTTCCCAGTACTATTCTCCCA
TAATGGAATTGCACGTACATGCTTCTTTACAAGCCGCTTTCATGTACAAGATATTATTGACAAAGCAGTTATTATTCACG
AAAGCCCCGACGATTTCAGAACGAATCCCACAGGTAAATCTGGAAGACGCTTAGCTTGTGGTGTTGTAAAGTACGAATAT
ATTGACATTAAAGATCATCCAATGTATAAGCTAAGAGCATTAAATTAA

Upstream 100 bases:

>100_bases
TCACAACTTATCAATAATAGAAAAAATAAAATTTGCATTTACACAATGTCCCTCTTTCCCACATACCCTGCAGTAAACAG
TTCTTGGGGGGACAACCCAA

Downstream 100 bases:

>100_bases
TATTGGATTTTAATTACACCAAAAAATGTTAAACCCTGAGTTCAGTTATAATTAGCTGAACCAGGGTTTTTTATTTTTGC
TTGACAAAATATAACGTTCA

Product: superoxide dismutase copper/zinc binding

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 175; Mature: 175

Protein sequence:

>175_residues
MYDTRNIIKVAMARIKGGSLAPDLKGIVTFDSVKNGTVICADIEGLPSFQRESHQPPIGPHGFHLHEIGTCKEGNPEDPF
QAAGGHWDPDNQPHGNHAGDFPVLFSHNGIARTCFFTSRFHVQDIIDKAVIIHESPDDFRTNPTGKSGRRLACGVVKYEY
IDIKDHPMYKLRALN

Sequences:

>Translated_175_residues
MYDTRNIIKVAMARIKGGSLAPDLKGIVTFDSVKNGTVICADIEGLPSFQRESHQPPIGPHGFHLHEIGTCKEGNPEDPF
QAAGGHWDPDNQPHGNHAGDFPVLFSHNGIARTCFFTSRFHVQDIIDKAVIIHESPDDFRTNPTGKSGRRLACGVVKYEY
IDIKDHPMYKLRALN
>Mature_175_residues
MYDTRNIIKVAMARIKGGSLAPDLKGIVTFDSVKNGTVICADIEGLPSFQRESHQPPIGPHGFHLHEIGTCKEGNPEDPF
QAAGGHWDPDNQPHGNHAGDFPVLFSHNGIARTCFFTSRFHVQDIIDKAVIIHESPDDFRTNPTGKSGRRLACGVVKYEY
IDIKDHPMYKLRALN

Specific function: Destroys radicals which are normally produced within the cells and which are toxic to biological systems [H]

COG id: COG2032

COG function: function code P; Cu/Zn superoxide dismutase

Gene ontology:

Cell location: Periplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the Cu-Zn superoxide dismutase family [H]

Homologues:

Organism=Escherichia coli, GI1787934, Length=145, Percent_Identity=33.7931034482759, Blast_Score=67, Evalue=6e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR018152
- InterPro:   IPR001424 [H]

Pfam domain/function: PF00080 Sod_Cu [H]

EC number: =1.15.1.1 [H]

Molecular weight: Translated: 19414; Mature: 19414

Theoretical pI: Translated: 7.11; Mature: 7.11

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYDTRNIIKVAMARIKGGSLAPDLKGIVTFDSVKNGTVICADIEGLPSFQRESHQPPIGP
CCCCHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCEEEEEECCCCCCHHHHCCCCCCCC
HGFHLHEIGTCKEGNPEDPFQAAGGHWDPDNQPHGNHAGDFPVLFSHNGIARTCFFTSRF
CCEEEEECCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCEEEECCCCEEEEEEECCC
HVQDIIDKAVIIHESPDDFRTNPTGKSGRRLACGVVKYEYIDIKDHPMYKLRALN
CHHHHHCCEEEEECCCCCCCCCCCCCCCCEEEEEEEEEEEEECCCCCCEEEEECC
>Mature Secondary Structure
MYDTRNIIKVAMARIKGGSLAPDLKGIVTFDSVKNGTVICADIEGLPSFQRESHQPPIGP
CCCCHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCEEEEEECCCCCCHHHHCCCCCCCC
HGFHLHEIGTCKEGNPEDPFQAAGGHWDPDNQPHGNHAGDFPVLFSHNGIARTCFFTSRF
CCEEEEECCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCEEEECCCCEEEEEEECCC
HVQDIIDKAVIIHESPDDFRTNPTGKSGRRLACGVVKYEYIDIKDHPMYKLRALN
CHHHHHCCEEEEECCCCCCCCCCCCCCCCEEEEEEEEEEEEECCCCCCEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9086394 [H]