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The map label for this gene is rnfD [H]

Identifier: 188585179

GI number: 188585179

Start: 562905

End: 563882

Strand: Direct

Name: rnfD [H]

Synonym: Nther_0540

Alternate gene names: 188585179

Gene position: 562905-563882 (Clockwise)

Preceding gene: 188585178

Following gene: 188585180

Centisome position: 17.78

GC content: 40.9

Gene sequence:

>978_bases
GTGGAATCGAATAAAACCATTGTTTCACCGTCACCGCACTTAAAAGCCGATCTCTCTGTGTCAAAATCTATGAGAGATGT
AATTATCGCTTTAATACCTATAATCCTTGTAACTTTATATTTCAATGGTATGCAGGCTTTGTCCTTAATAGCAGTTTCAG
TTGTCACAGCAGCGGTGACAGAAGTGGTATTTCGAAAAATAATGGGGAAACAACCATCCTTGGCAGATTTAAGTGCAGTT
CTTACAGGGTTATTTGTAGCTTTAGTGTTACCAGTTGCAACATCACCTATTAGGGCCATAATAGCTACTGTTATAGCAGT
AGGTATAGCCAAAGAATTAATGGGTAGTTTGGGTTGGAACCGATATAACCCTGCTTTATTTGGGTATGTAACTACATTGT
TGATGGGAGCATGGCTTCCATTCATGGAAACTGGATTTCAGTCACTACCGGCTTTAGATTCAGTTAGCGGGGCCACCCCT
CTGGCTATGTTGACTCAAGGGATGGAAATGCCCGGTTATGGAAGTATGTTGTTAGGACATGGCGAGGCAGGGTCTCTTGC
TGAAGCTTCTGCCTTAGCAGTTATAATTGGCGGCTTATATTTACTCTATAAGAAACATATTAACTGGAGAACTCCAGTGG
GAATGATAGCTACAGTATTCATCATCAGCTTGATTTTTGGCGTTGATCCAATTTATGCAGTTTTAGGTGGAGGAGTTCTT
TTTGGAGCTTTCTTCATGGCAACTGACTGGGTTACTTGCCCTATCAATAATAAAGGTAAACTAGTCTTTGGAATTTGTGT
CGGCTTACTAATTTGCATATTTAGATATGCACTACCAGCCACAGGTGGGGTTGCTTTTTCTATCTTAATTATGAATGGCT
TCACACCAATGATAGAGAAATTTACCCAGCACCCATCTTTTATGGAGCCACGTAAGACTTCTGAACCTGCTTCCGGAGGT
AAAACGGCTAGTAGCTAA

Upstream 100 bases:

>100_bases
TTAAAAGGAGACAACGGCAACGAAGTAAATAGATTAGAAGTTAGAACCTGAGTATTGTGAAGAAATCGTGTTGTAATTTT
TGGAGAAGGGGGAATCCACA

Downstream 100 bases:

>100_bases
AAATTTAGATTTGCAATGAATTTTTAATAGGGGATTTCATGAAGACTAAAGCATAAAACACGGCAGGTTTATACCACCTG
CCGTGTTTTATAAGGATATT

Product: electron transport complex, RnfABCDGE type, D subunit

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 325; Mature: 325

Protein sequence:

>325_residues
MESNKTIVSPSPHLKADLSVSKSMRDVIIALIPIILVTLYFNGMQALSLIAVSVVTAAVTEVVFRKIMGKQPSLADLSAV
LTGLFVALVLPVATSPIRAIIATVIAVGIAKELMGSLGWNRYNPALFGYVTTLLMGAWLPFMETGFQSLPALDSVSGATP
LAMLTQGMEMPGYGSMLLGHGEAGSLAEASALAVIIGGLYLLYKKHINWRTPVGMIATVFIISLIFGVDPIYAVLGGGVL
FGAFFMATDWVTCPINNKGKLVFGICVGLLICIFRYALPATGGVAFSILIMNGFTPMIEKFTQHPSFMEPRKTSEPASGG
KTASS

Sequences:

>Translated_325_residues
MESNKTIVSPSPHLKADLSVSKSMRDVIIALIPIILVTLYFNGMQALSLIAVSVVTAAVTEVVFRKIMGKQPSLADLSAV
LTGLFVALVLPVATSPIRAIIATVIAVGIAKELMGSLGWNRYNPALFGYVTTLLMGAWLPFMETGFQSLPALDSVSGATP
LAMLTQGMEMPGYGSMLLGHGEAGSLAEASALAVIIGGLYLLYKKHINWRTPVGMIATVFIISLIFGVDPIYAVLGGGVL
FGAFFMATDWVTCPINNKGKLVFGICVGLLICIFRYALPATGGVAFSILIMNGFTPMIEKFTQHPSFMEPRKTSEPASGG
KTASS
>Mature_325_residues
MESNKTIVSPSPHLKADLSVSKSMRDVIIALIPIILVTLYFNGMQALSLIAVSVVTAAVTEVVFRKIMGKQPSLADLSAV
LTGLFVALVLPVATSPIRAIIATVIAVGIAKELMGSLGWNRYNPALFGYVTTLLMGAWLPFMETGFQSLPALDSVSGATP
LAMLTQGMEMPGYGSMLLGHGEAGSLAEASALAVIIGGLYLLYKKHINWRTPVGMIATVFIISLIFGVDPIYAVLGGGVL
FGAFFMATDWVTCPINNKGKLVFGICVGLLICIFRYALPATGGVAFSILIMNGFTPMIEKFTQHPSFMEPRKTSEPASGG
KTASS

Specific function: May be part of a membrane complex involved in electron transport [H]

COG id: COG4658

COG function: function code C; Predicted NADH:ubiquinone oxidoreductase, subunit RnfD

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nqrB/rnfD family [H]

Homologues:

Organism=Escherichia coli, GI1787917, Length=354, Percent_Identity=30.7909604519774, Blast_Score=133, Evalue=1e-32,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011303
- InterPro:   IPR004338 [H]

Pfam domain/function: PF03116 NQR2_RnfD_RnfE [H]

EC number: NA

Molecular weight: Translated: 34383; Mature: 34383

Theoretical pI: Translated: 9.06; Mature: 9.06

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
4.9 %Met     (Translated Protein)
5.8 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
4.9 %Met     (Mature Protein)
5.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MESNKTIVSPSPHLKADLSVSKSMRDVIIALIPIILVTLYFNGMQALSLIAVSVVTAAVT
CCCCCCEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EVVFRKIMGKQPSLADLSAVLTGLFVALVLPVATSPIRAIIATVIAVGIAKELMGSLGWN
HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCC
RYNPALFGYVTTLLMGAWLPFMETGFQSLPALDSVSGATPLAMLTQGMEMPGYGSMLLGH
CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHCCCCCCHHHHHHCCCCCCCCCCEEEEC
GEAGSLAEASALAVIIGGLYLLYKKHINWRTPVGMIATVFIISLIFGVDPIYAVLGGGVL
CCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHH
FGAFFMATDWVTCPINNKGKLVFGICVGLLICIFRYALPATGGVAFSILIMNGFTPMIEK
HHHHHHHHCCEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHH
FTQHPSFMEPRKTSEPASGGKTASS
HHCCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MESNKTIVSPSPHLKADLSVSKSMRDVIIALIPIILVTLYFNGMQALSLIAVSVVTAAVT
CCCCCCEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EVVFRKIMGKQPSLADLSAVLTGLFVALVLPVATSPIRAIIATVIAVGIAKELMGSLGWN
HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCC
RYNPALFGYVTTLLMGAWLPFMETGFQSLPALDSVSGATPLAMLTQGMEMPGYGSMLLGH
CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHCCCCCCHHHHHHCCCCCCCCCCEEEEC
GEAGSLAEASALAVIIGGLYLLYKKHINWRTPVGMIATVFIISLIFGVDPIYAVLGGGVL
CCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHH
FGAFFMATDWVTCPINNKGKLVFGICVGLLICIFRYALPATGGVAFSILIMNGFTPMIEK
HHHHHHHHCCEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHH
FTQHPSFMEPRKTSEPASGGKTASS
HHCCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA