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The map label for this gene is rnfC [H]

Identifier: 188585133

GI number: 188585133

Start: 522705

End: 524027

Strand: Direct

Name: rnfC [H]

Synonym: Nther_0494

Alternate gene names: 188585133

Gene position: 522705-524027 (Clockwise)

Preceding gene: 188585132

Following gene: 188585134

Centisome position: 16.51

GC content: 41.04

Gene sequence:

>1323_bases
ATGGCTAATCAAACTTTTCCAGGTGGCATTTCTCCTGGTCATTTTAAAGATACTAAGGACAAGCCTATAGAATCCTTGGA
ACTTCCCAAAAAAGTTTATATACCTATGGAGCAGCATATTGGTGCCCCCTGCACTCCAACTGTGGAAGTTGGGGATTATG
TAAAAACAGGTCAAAAGATTGGAGAAAGTGATAAATTTGTATCAGCTCCAGTCCATGCCAGCATATCTGGTGAAGTTGTG
GACATTGTTCAGTATAATCATCCTTTAGGTAACACATCTCAAACTGTAGTAATTGAATCTGATGGGCAGGATGAACCGGA
TTATCAGGATGAAGAACAAACAGTTAATTTGGATAGCTTCTCAGCTGAAGAAATTAAAAATGTAGTCAAAGAAGCCGGAA
TCGTCGGCTTAGGAGGTGCTACATTTCCAACTCATGTTAAAATTTCTCCTCCTGAGGACAAGCCTATTGATACGGTGTTG
ATTAATGGTGCTGAATGTGAACCTTTTTTAACATCAGACCACAGGCTCATGGTTGAGCAAGCAGAAAAAATTATATTTGG
GTTGCGGGCTATTATGAAAGCCGTCAACTGTGACAGAGGCATAATTGCCATTGAAGATAATAAACCTGATGCTGTTGAGG
CTATGAATTCCTTGGTAACTGATGATGACTCTTTAGAAGTGATGACTTTTGAAACTAAATATCCTCAGGGAGCGGAAAAA
CAGCTGATCAAAGCAGCCTTAGATAGAGAGGTTCCCTCAGGCGGACTCCCCATGGATGTAGGTTGTGTTGTAAATAATAC
CGGCACTGCTTTAGCTGTGGCTGATGCTTTAAGGACTAATAAACCAATTTTGGAGAGAGTTGTAACTATTTCTGGTCCTG
GAATCGAACAATCGGGTAACTTTATGGTTAGACTTGGAACCCTGGCTTCAGATTTGATTGAACAGCTAGGTGGAATGGGG
GATCAAACGAGAAAAATCATTATGGGTGGCCCTATGATGGGAATTAGTCAGCCAAATGCTGATTTTCCAGTGATTAAAGG
AACATCCGGTGTCTTACTTCTAACTGATCAAGAGGTACAGATTTTTGAAGAAAGACCATGTATAAACTGTGGCCGTTGTG
TTGACAGTTGTCCGATTTCTTTATTGCCCAATTTACTAGGGACTTTTATGGAGCATGAACGCCCAGACAAAGCAGAGGAT
TTTAATGCTCTCGACTGTATTGAATGTGGTTGTTGTACCTATATCTGCCCTGCTCGACGTCCCCTAGTACATTATATCAG
GGTGGCTAAAGGCGAAATAATGGCAAAACGGCAAAACAAGTAA

Upstream 100 bases:

>100_bases
TCTTTTATTAAAATATAGCTTATGATAAAATACTTTATTGTGATGAGTTTGTTATATTTTTTATCTAAATCGAGAAATCT
TTAACAAGGGAGGGTAAGTG

Downstream 100 bases:

>100_bases
ATTCTAATTAAGAAGAGATTGGAGGGTAGTTAGAATGGCGAATAAATTAGTAGTATCTTCTTCACCACACTTGCGAACAC
CTGAATCAGTAGACAGTATA

Product: electron transport complex, RnfABCDGE type, C subunit

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 440; Mature: 439

Protein sequence:

>440_residues
MANQTFPGGISPGHFKDTKDKPIESLELPKKVYIPMEQHIGAPCTPTVEVGDYVKTGQKIGESDKFVSAPVHASISGEVV
DIVQYNHPLGNTSQTVVIESDGQDEPDYQDEEQTVNLDSFSAEEIKNVVKEAGIVGLGGATFPTHVKISPPEDKPIDTVL
INGAECEPFLTSDHRLMVEQAEKIIFGLRAIMKAVNCDRGIIAIEDNKPDAVEAMNSLVTDDDSLEVMTFETKYPQGAEK
QLIKAALDREVPSGGLPMDVGCVVNNTGTALAVADALRTNKPILERVVTISGPGIEQSGNFMVRLGTLASDLIEQLGGMG
DQTRKIIMGGPMMGISQPNADFPVIKGTSGVLLLTDQEVQIFEERPCINCGRCVDSCPISLLPNLLGTFMEHERPDKAED
FNALDCIECGCCTYICPARRPLVHYIRVAKGEIMAKRQNK

Sequences:

>Translated_440_residues
MANQTFPGGISPGHFKDTKDKPIESLELPKKVYIPMEQHIGAPCTPTVEVGDYVKTGQKIGESDKFVSAPVHASISGEVV
DIVQYNHPLGNTSQTVVIESDGQDEPDYQDEEQTVNLDSFSAEEIKNVVKEAGIVGLGGATFPTHVKISPPEDKPIDTVL
INGAECEPFLTSDHRLMVEQAEKIIFGLRAIMKAVNCDRGIIAIEDNKPDAVEAMNSLVTDDDSLEVMTFETKYPQGAEK
QLIKAALDREVPSGGLPMDVGCVVNNTGTALAVADALRTNKPILERVVTISGPGIEQSGNFMVRLGTLASDLIEQLGGMG
DQTRKIIMGGPMMGISQPNADFPVIKGTSGVLLLTDQEVQIFEERPCINCGRCVDSCPISLLPNLLGTFMEHERPDKAED
FNALDCIECGCCTYICPARRPLVHYIRVAKGEIMAKRQNK
>Mature_439_residues
ANQTFPGGISPGHFKDTKDKPIESLELPKKVYIPMEQHIGAPCTPTVEVGDYVKTGQKIGESDKFVSAPVHASISGEVVD
IVQYNHPLGNTSQTVVIESDGQDEPDYQDEEQTVNLDSFSAEEIKNVVKEAGIVGLGGATFPTHVKISPPEDKPIDTVLI
NGAECEPFLTSDHRLMVEQAEKIIFGLRAIMKAVNCDRGIIAIEDNKPDAVEAMNSLVTDDDSLEVMTFETKYPQGAEKQ
LIKAALDREVPSGGLPMDVGCVVNNTGTALAVADALRTNKPILERVVTISGPGIEQSGNFMVRLGTLASDLIEQLGGMGD
QTRKIIMGGPMMGISQPNADFPVIKGTSGVLLLTDQEVQIFEERPCINCGRCVDSCPISLLPNLLGTFMEHERPDKAEDF
NALDCIECGCCTYICPARRPLVHYIRVAKGEIMAKRQNK

Specific function: May be part of a membrane complex involved in electron transport [H]

COG id: COG4656

COG function: function code C; Predicted NADH:ubiquinone oxidoreductase, subunit RnfC

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein [H]

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 4Fe-4S ferredoxin-type domains [H]

Homologues:

Organism=Escherichia coli, GI1787916, Length=439, Percent_Identity=38.7243735763098, Blast_Score=301, Evalue=5e-83,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017896
- InterPro:   IPR017900
- InterPro:   IPR010208
- InterPro:   IPR012285
- InterPro:   IPR009051
- InterPro:   IPR011538
- InterPro:   IPR019554 [H]

Pfam domain/function: PF01512 Complex1_51K; PF10531 SLBB [H]

EC number: NA

Molecular weight: Translated: 47667; Mature: 47536

Theoretical pI: Translated: 4.47; Mature: 4.47

Prosite motif: PS00198 4FE4S_FERREDOXIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.0 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
6.1 %Cys+Met (Translated Protein)
3.0 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
5.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MANQTFPGGISPGHFKDTKDKPIESLELPKKVYIPMEQHIGAPCTPTVEVGDYVKTGQKI
CCCCCCCCCCCCCCCCCCCCCCCHHHCCCCEEECCHHHHCCCCCCCCCCCCHHHHHHHHC
GESDKFVSAPVHASISGEVVDIVQYNHPLGNTSQTVVIESDGQDEPDYQDEEQTVNLDSF
CCCCCEEECCCEECCCCCEEEEEEECCCCCCCCCEEEEECCCCCCCCCCCCHHEECCCCC
SAEEIKNVVKEAGIVGLGGATFPTHVKISPPEDKPIDTVLINGAECEPFLTSDHRLMVEQ
CHHHHHHHHHHCCEEEECCCCCCCEEEECCCCCCCCCEEEEECCCCCCEECCCCHHHHHH
AEKIIFGLRAIMKAVNCDRGIIAIEDNKPDAVEAMNSLVTDDDSLEVMTFETKYPQGAEK
HHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHCCCCCCEEEEEEECCCCCCHHH
QLIKAALDREVPSGGLPMDVGCVVNNTGTALAVADALRTNKPILERVVTISGPGIEQSGN
HHHHHHHHCCCCCCCCCEEEEEEEECCCCEEHHHHHHHCCCHHHHHEEECCCCCCCCCCC
FMVRLGTLASDLIEQLGGMGDQTRKIIMGGPMMGISQPNADFPVIKGTSGVLLLTDQEVQ
EEEEEHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCCCCCCEEECCCCEEEEECCCHH
IFEERPCINCGRCVDSCPISLLPNLLGTFMEHERPDKAEDFNALDCIECGCCTYICPARR
HHHCCCCCCHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHCCHHEECCCCC
PLVHYIRVAKGEIMAKRQNK
HHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure 
ANQTFPGGISPGHFKDTKDKPIESLELPKKVYIPMEQHIGAPCTPTVEVGDYVKTGQKI
CCCCCCCCCCCCCCCCCCCCCCHHHCCCCEEECCHHHHCCCCCCCCCCCCHHHHHHHHC
GESDKFVSAPVHASISGEVVDIVQYNHPLGNTSQTVVIESDGQDEPDYQDEEQTVNLDSF
CCCCCEEECCCEECCCCCEEEEEEECCCCCCCCCEEEEECCCCCCCCCCCCHHEECCCCC
SAEEIKNVVKEAGIVGLGGATFPTHVKISPPEDKPIDTVLINGAECEPFLTSDHRLMVEQ
CHHHHHHHHHHCCEEEECCCCCCCEEEECCCCCCCCCEEEEECCCCCCEECCCCHHHHHH
AEKIIFGLRAIMKAVNCDRGIIAIEDNKPDAVEAMNSLVTDDDSLEVMTFETKYPQGAEK
HHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHCCCCCCEEEEEEECCCCCCHHH
QLIKAALDREVPSGGLPMDVGCVVNNTGTALAVADALRTNKPILERVVTISGPGIEQSGN
HHHHHHHHCCCCCCCCCEEEEEEEECCCCEEHHHHHHHCCCHHHHHEEECCCCCCCCCCC
FMVRLGTLASDLIEQLGGMGDQTRKIIMGGPMMGISQPNADFPVIKGTSGVLLLTDQEVQ
EEEEEHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCCCCCCEEECCCCEEEEECCCHH
IFEERPCINCGRCVDSCPISLLPNLLGTFMEHERPDKAEDFNALDCIECGCCTYICPARR
HHHCCCCCCHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHCCHHEECCCCC
PLVHYIRVAKGEIMAKRQNK
HHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: 4Fe-4S clusters [C]

Metal ions: Iron-Sulfur [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]