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The map label for this gene is rnfD [H]

Identifier: 188585134

GI number: 188585134

Start: 524062

End: 524988

Strand: Direct

Name: rnfD [H]

Synonym: Nther_0495

Alternate gene names: 188585134

Gene position: 524062-524988 (Clockwise)

Preceding gene: 188585133

Following gene: 188585135

Centisome position: 16.56

GC content: 41.96

Gene sequence:

>927_bases
ATGGCGAATAAATTAGTAGTATCTTCTTCACCACACTTGCGAACACCTGAATCAGTAGACAGTATAATGAGAGATGTTTT
GATTGCTCTGATTCCACCATTAATAGTCAGTGCCTGGTTATTTAGTTTATATTCAATTTGGATGGTAGTTGTGGCTACGG
TGGTTTGCATGGTGAGCGAAGCAGTTATGGTTCATAAATCTGTAAGTCTTTCTAAAATTAAAGGCGATTGGAGTGCCGCC
GTAACAGGGGTTATTTATGGATTGAGCTTGCCGCCTGGAACTCCGTGGTGGGTAGTAGCCATTGGAGCGTTTATAGCTAT
CTCTGTAGGAAAACATGTATTTGGTGGATTAGGCTACAATATTTTCAATCCAGCACTTGTAGGGCGAGCTTTTGTTGTGC
TAGCATGGCCCAGTTACTTAACACATTGGACAGAGCCATTCCAAGCCGTTGATTTTGATTCAGCAACAGCGGCTACTCCA
CTAGTAGTGGATTCCGATGCGGTATCCTTGTCTGATTTGTTTGTAGGAACCACTGGGGGTTCTATTGGTGAGACATCAAT
ATTAGCAATTTTACTAGGTGCTGTATTCCTGCTGGTAAAAGGTCATATTGATATTAGAATACCGGCAGCATATATGGGTG
CTGTAGCTGTAATGGCCTTAGTAACTGGCCAGGATATTATGTATCATTTATTTAGCGGCAGTGCTTTTTTTGCTGCGGTT
TATATGGCTACTTGTATGGTAACCTCACCTTATACTAAGACTGGTAAATTGATATTTGGTTTCGGTTGTGGCCTCTTCAC
AGCATTGTTCAGGATGTTCGGATCTGCACCTGAAGGAGTGACATATGCAATCTTGCTGATGAATGCCCTAGTGCCATTTA
TTAACAAGTATACCAGGCCCAAAATTTATGGGGAGGTGTCCAACTAA

Upstream 100 bases:

>100_bases
CGTCCCCTAGTACATTATATCAGGGTGGCTAAAGGCGAAATAATGGCAAAACGGCAAAACAAGTAAATTCTAATTAAGAA
GAGATTGGAGGGTAGTTAGA

Downstream 100 bases:

>100_bases
ATGAAACTTAATGATCTGTTAAAATTAGGTGGAGTTTTAATGGTGGTTGCTGCGCTCTCAGCCACCTTGCTAGGTTTTTC
CAATTCTTATACTGATCCCA

Product: electron transport complex, RnfABCDGE type, D subunit

Products: NA

Alternate protein names: Nitrogen fixation protein rnfD [H]

Number of amino acids: Translated: 308; Mature: 307

Protein sequence:

>308_residues
MANKLVVSSSPHLRTPESVDSIMRDVLIALIPPLIVSAWLFSLYSIWMVVVATVVCMVSEAVMVHKSVSLSKIKGDWSAA
VTGVIYGLSLPPGTPWWVVAIGAFIAISVGKHVFGGLGYNIFNPALVGRAFVVLAWPSYLTHWTEPFQAVDFDSATAATP
LVVDSDAVSLSDLFVGTTGGSIGETSILAILLGAVFLLVKGHIDIRIPAAYMGAVAVMALVTGQDIMYHLFSGSAFFAAV
YMATCMVTSPYTKTGKLIFGFGCGLFTALFRMFGSAPEGVTYAILLMNALVPFINKYTRPKIYGEVSN

Sequences:

>Translated_308_residues
MANKLVVSSSPHLRTPESVDSIMRDVLIALIPPLIVSAWLFSLYSIWMVVVATVVCMVSEAVMVHKSVSLSKIKGDWSAA
VTGVIYGLSLPPGTPWWVVAIGAFIAISVGKHVFGGLGYNIFNPALVGRAFVVLAWPSYLTHWTEPFQAVDFDSATAATP
LVVDSDAVSLSDLFVGTTGGSIGETSILAILLGAVFLLVKGHIDIRIPAAYMGAVAVMALVTGQDIMYHLFSGSAFFAAV
YMATCMVTSPYTKTGKLIFGFGCGLFTALFRMFGSAPEGVTYAILLMNALVPFINKYTRPKIYGEVSN
>Mature_307_residues
ANKLVVSSSPHLRTPESVDSIMRDVLIALIPPLIVSAWLFSLYSIWMVVVATVVCMVSEAVMVHKSVSLSKIKGDWSAAV
TGVIYGLSLPPGTPWWVVAIGAFIAISVGKHVFGGLGYNIFNPALVGRAFVVLAWPSYLTHWTEPFQAVDFDSATAATPL
VVDSDAVSLSDLFVGTTGGSIGETSILAILLGAVFLLVKGHIDIRIPAAYMGAVAVMALVTGQDIMYHLFSGSAFFAAVY
MATCMVTSPYTKTGKLIFGFGCGLFTALFRMFGSAPEGVTYAILLMNALVPFINKYTRPKIYGEVSN

Specific function: Required for nitrogen fixation. May be part of a membrane complex functioning as an intermediate in the electron transport to nitrogenase [H]

COG id: COG4658

COG function: function code C; Predicted NADH:ubiquinone oxidoreductase, subunit RnfD

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nqrB/rnfD family [H]

Homologues:

Organism=Escherichia coli, GI1787917, Length=345, Percent_Identity=29.5652173913043, Blast_Score=155, Evalue=2e-39,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011303
- InterPro:   IPR004338 [H]

Pfam domain/function: PF03116 NQR2_RnfD_RnfE [H]

EC number: NA

Molecular weight: Translated: 32864; Mature: 32733

Theoretical pI: Translated: 7.59; Mature: 7.59

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MANKLVVSSSPHLRTPESVDSIMRDVLIALIPPLIVSAWLFSLYSIWMVVVATVVCMVSE
CCCCEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AVMVHKSVSLSKIKGDWSAAVTGVIYGLSLPPGTPWWVVAIGAFIAISVGKHVFGGLGYN
HHHHHHCCHHHHHCCCHHHHHHHHHEECCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHH
IFNPALVGRAFVVLAWPSYLTHWTEPFQAVDFDSATAATPLVVDSDAVSLSDLFVGTTGG
HHCHHHHHHHHHEEECHHHHHHHCCCHHHCCCCCCCCCCCEEECCCCCCHHHHEEECCCC
SIGETSILAILLGAVFLLVKGHIDIRIPAAYMGAVAVMALVTGQDIMYHLFSGSAFFAAV
CCCHHHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHHCHHHHHHHHCCHHHHHHH
YMATCMVTSPYTKTGKLIFGFGCGLFTALFRMFGSAPEGVTYAILLMNALVPFINKYTRP
HHHHHHHCCCCCCCCCEEEEECHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCC
KIYGEVSN
CEEEECCC
>Mature Secondary Structure 
ANKLVVSSSPHLRTPESVDSIMRDVLIALIPPLIVSAWLFSLYSIWMVVVATVVCMVSE
CCCEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AVMVHKSVSLSKIKGDWSAAVTGVIYGLSLPPGTPWWVVAIGAFIAISVGKHVFGGLGYN
HHHHHHCCHHHHHCCCHHHHHHHHHEECCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHH
IFNPALVGRAFVVLAWPSYLTHWTEPFQAVDFDSATAATPLVVDSDAVSLSDLFVGTTGG
HHCHHHHHHHHHEEECHHHHHHHCCCHHHCCCCCCCCCCCEEECCCCCCHHHHEEECCCC
SIGETSILAILLGAVFLLVKGHIDIRIPAAYMGAVAVMALVTGQDIMYHLFSGSAFFAAV
CCCHHHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHHCHHHHHHHHCCHHHHHHH
YMATCMVTSPYTKTGKLIFGFGCGLFTALFRMFGSAPEGVTYAILLMNALVPFINKYTRP
HHHHHHHCCCCCCCCCEEEEECHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCC
KIYGEVSN
CEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA