| Definition | Helicobacter pylori Shi470, complete genome. |
|---|---|
| Accession | NC_010698 |
| Length | 1,608,548 |
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The map label for this gene is 188528326
Identifier: 188528326
GI number: 188528326
Start: 1556175
End: 1557071
Strand: Direct
Name: 188528326
Synonym: HPSH_07990
Alternate gene names: NA
Gene position: 1556175-1557071 (Clockwise)
Preceding gene: 188528325
Following gene: 188528327
Centisome position: 96.74
GC content: 35.23
Gene sequence:
>897_bases ATGGTTAGTAACACTACCTTGCAAAAGAATTTAGACGCTTTTTACACCCACCCCAAAATCGCGCGATTTTGTTTGGATTT ATTAAAAGATCTCATCAATCAAAATCTAGGGCTAGGCTTAAATGCATTCCATTTTTTAGAGCCAAGTGCAGGGAGTGGGA GCTTTGTTGGCGCGTTAAAAGGATTAGGGATTGCTGATTGTCTCGCCCTTGATATTGCCCCTAAAGCTCAAGGCATTCAA CAAAAAGATTATTTGTTGGAATTGATTGAGTTTAACAAAAAGCGTGTCATTATTGGCAACCCTCCTTTTGGGCACAGAGG GAAATTAGCCCTAGATTTTTTAAACAAATCTTTGAATGAAGCGCCTATTGTAGCGTTTATTTTGCCCAATTTATTCAAAC GCTATTCTGTTCAAAAACACATTGATAAGCGTGCAAAATTGGTTTTAAACGCTGATTTAGAAAAAAACGCTTTTATTTTT AATGAACGACCCTATGATGTGAAATGCGTTTTTCAAATCTATATGCATAAAAATATCGCCCTAAATCTTAAAGACGAACG GATCGTTGCACCCCCAAAAATCCGCCATAATGACTTCATTACTTATATTCATAACAACACGCCACACACCCTTAAATATT TCAACAAAGAAAAATACCAATGGGATTTTGCGGTGGTAAGGCAAGGCTTTTATGATTACAACGAAAAGATCACCAATGCA AATTTACTGATTAAAAACCGACAATATTTTTTTGTTAAAGCCCACTCTAAAGAAGCTTTAAGGATTATCCATAAAATTGA TTTTAACAAACTCGCTCATAAAAACACGCAAGTTTTAGGGTTTTCTACTTATGATTTTGTGGAAGAATATTGCAAATTAA AGGAAATGCATGCTTGA
Upstream 100 bases:
>100_bases TTTGAATTGCGAGATCCGCAACAGCTATGTGAATGCGGCTTATGAGAGCATGAGTTTAGGCGAAGCGGGCGGGTTTGATT TCAATTAAAATGGGCTTAAA
Downstream 100 bases:
>100_bases AAAAGTGTTTCAAGAAATTACCAATAAAAGAAAGTTTTTTGCAAGTTCTAGCACAGGGGAGCAGTTTGAAAACAATTTTA GGAATGAATTAAAAAAACAC
Product: putative type II methylase protein
Products: NA
Alternate protein names: Type II R-M System Methyltransferase; Methyltransferase
Number of amino acids: Translated: 298; Mature: 298
Protein sequence:
>298_residues MVSNTTLQKNLDAFYTHPKIARFCLDLLKDLINQNLGLGLNAFHFLEPSAGSGSFVGALKGLGIADCLALDIAPKAQGIQ QKDYLLELIEFNKKRVIIGNPPFGHRGKLALDFLNKSLNEAPIVAFILPNLFKRYSVQKHIDKRAKLVLNADLEKNAFIF NERPYDVKCVFQIYMHKNIALNLKDERIVAPPKIRHNDFITYIHNNTPHTLKYFNKEKYQWDFAVVRQGFYDYNEKITNA NLLIKNRQYFFVKAHSKEALRIIHKIDFNKLAHKNTQVLGFSTYDFVEEYCKLKEMHA
Sequences:
>Translated_298_residues MVSNTTLQKNLDAFYTHPKIARFCLDLLKDLINQNLGLGLNAFHFLEPSAGSGSFVGALKGLGIADCLALDIAPKAQGIQ QKDYLLELIEFNKKRVIIGNPPFGHRGKLALDFLNKSLNEAPIVAFILPNLFKRYSVQKHIDKRAKLVLNADLEKNAFIF NERPYDVKCVFQIYMHKNIALNLKDERIVAPPKIRHNDFITYIHNNTPHTLKYFNKEKYQWDFAVVRQGFYDYNEKITNA NLLIKNRQYFFVKAHSKEALRIIHKIDFNKLAHKNTQVLGFSTYDFVEEYCKLKEMHA >Mature_298_residues MVSNTTLQKNLDAFYTHPKIARFCLDLLKDLINQNLGLGLNAFHFLEPSAGSGSFVGALKGLGIADCLALDIAPKAQGIQ QKDYLLELIEFNKKRVIIGNPPFGHRGKLALDFLNKSLNEAPIVAFILPNLFKRYSVQKHIDKRAKLVLNADLEKNAFIF NERPYDVKCVFQIYMHKNIALNLKDERIVAPPKIRHNDFITYIHNNTPHTLKYFNKEKYQWDFAVVRQGFYDYNEKITNA NLLIKNRQYFFVKAHSKEALRIIHKIDFNKLAHKNTQVLGFSTYDFVEEYCKLKEMHA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 34491; Mature: 34491
Theoretical pI: Translated: 9.88; Mature: 9.88
Prosite motif: PS00092 N6_MTASE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 1.0 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 1.0 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MVSNTTLQKNLDAFYTHPKIARFCLDLLKDLINQNLGLGLNAFHFLEPSAGSGSFVGALK CCCCCCHHHCCHHHHCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCHHHHHH GLGIADCLALDIAPKAQGIQQKDYLLELIEFNKKRVIIGNPPFGHRGKLALDFLNKSLNE CCCHHHHHEEECCCCCCCCCHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHCCCCC APIVAFILPNLFKRYSVQKHIDKRAKLVLNADLEKNAFIFNERPYDVKCVFQIYMHKNIA CCCHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCCEEEECCCCCCCEEEEEEEECCCEE LNLKDERIVAPPKIRHNDFITYIHNNTPHTLKYFNKEKYQWDFAVVRQGFYDYNEKITNA EEECCCEEECCCCCCCCCEEEEEECCCCCHHHHCCCCCEEHHHHHHHHHHHHHHHHCCCC NLLIKNRQYFFVKAHSKEALRIIHKIDFNKLAHKNTQVLGFSTYDFVEEYCKLKEMHA EEEEECCEEEEEEECCHHHHHHHHHHCHHHHHCCCCEEEEECHHHHHHHHHHHHHCCC >Mature Secondary Structure MVSNTTLQKNLDAFYTHPKIARFCLDLLKDLINQNLGLGLNAFHFLEPSAGSGSFVGALK CCCCCCHHHCCHHHHCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCHHHHHH GLGIADCLALDIAPKAQGIQQKDYLLELIEFNKKRVIIGNPPFGHRGKLALDFLNKSLNE CCCHHHHHEEECCCCCCCCCHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHCCCCC APIVAFILPNLFKRYSVQKHIDKRAKLVLNADLEKNAFIFNERPYDVKCVFQIYMHKNIA CCCHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCCEEEECCCCCCCEEEEEEEECCCEE LNLKDERIVAPPKIRHNDFITYIHNNTPHTLKYFNKEKYQWDFAVVRQGFYDYNEKITNA EEECCCEEECCCCCCCCCEEEEEECCCCCHHHHCCCCCEEHHHHHHHHHHHHHHHHCCCC NLLIKNRQYFFVKAHSKEALRIIHKIDFNKLAHKNTQVLGFSTYDFVEEYCKLKEMHA EEEEECCEEEEEEECCHHHHHHHHHHCHHHHHCCCCEEEEECHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA