| Definition | Helicobacter pylori Shi470, complete genome. |
|---|---|
| Accession | NC_010698 |
| Length | 1,608,548 |
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The map label for this gene is 188528281
Identifier: 188528281
GI number: 188528281
Start: 1503392
End: 1503718
Strand: Direct
Name: 188528281
Synonym: HPSH_07755
Alternate gene names: NA
Gene position: 1503392-1503718 (Clockwise)
Preceding gene: 188528280
Following gene: 188528282
Centisome position: 93.46
GC content: 38.23
Gene sequence:
>327_bases ATGAAAACGATCTTTAGCTTCTTTTTCCTTCTTATTGTTTTAAAAGCAAACCCCATAAACCCTTTATTAGAGCCGTTATA TTTCCCAAATTACGCGCAATTTTTAAATTTAGAACCTCATTTTGTCATTAAAAAAAAGCGCACTTATAGACCCTTCCAAT GGGGGAATACCATCATCATCAAACGCCATGACTTAGAAGAACGCCAAAGCAACCAGCCAAGCGATATTTTCCGCCAAAAC GCCGAAATCAATGTGTCTTCTCAAACTTTTTTAAGGGGCATGAGCAGCGCTTCTTCACGAATAGTGATCGATTCAGTCGT TCAGTAA
Upstream 100 bases:
>100_bases TTAAAAACGCGCTATAGTGAAATCTCTGAGCTTCATTTAAAAATCAGCAAGTTAGAAATTTCTCCAAATTCTCAAGTGGG AGCGAGCGTGAAAATTCGCT
Downstream 100 bases:
>100_bases AATGTTAAAACTTTTTTAATCACATTTTTCTTGGTATTTTCTTAATCCTAAAACAAATTTAAGGTATTATTAAATAGAAT AATGTAATAATAACTTTAGG
Product: FrpB-like protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 108; Mature: 108
Protein sequence:
>108_residues MKTIFSFFFLLIVLKANPINPLLEPLYFPNYAQFLNLEPHFVIKKKRTYRPFQWGNTIIIKRHDLEERQSNQPSDIFRQN AEINVSSQTFLRGMSSASSRIVIDSVVQ
Sequences:
>Translated_108_residues MKTIFSFFFLLIVLKANPINPLLEPLYFPNYAQFLNLEPHFVIKKKRTYRPFQWGNTIIIKRHDLEERQSNQPSDIFRQN AEINVSSQTFLRGMSSASSRIVIDSVVQ >Mature_108_residues MKTIFSFFFLLIVLKANPINPLLEPLYFPNYAQFLNLEPHFVIKKKRTYRPFQWGNTIIIKRHDLEERQSNQPSDIFRQN AEINVSSQTFLRGMSSASSRIVIDSVVQ
Specific function: Unknown
COG id: COG1629
COG function: function code P; Outer membrane receptor proteins, mostly Fe transport
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 12690; Mature: 12690
Theoretical pI: Translated: 10.46; Mature: 10.46
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 1.9 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 1.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKTIFSFFFLLIVLKANPINPLLEPLYFPNYAQFLNLEPHFVIKKKRTYRPFQWGNTIII CHHHHHHHHHHHHHCCCCCCHHHHHHCCCCHHHHCCCCCCEEEECCCCCCCCCCCCEEEE KRHDLEERQSNQPSDIFRQNAEINVSSQTFLRGMSSASSRIVIDSVVQ ECCCCHHHHCCCCHHHHHCCCCCCCCHHHHHHHHCCCCCEEEEHECCC >Mature Secondary Structure MKTIFSFFFLLIVLKANPINPLLEPLYFPNYAQFLNLEPHFVIKKKRTYRPFQWGNTIII CHHHHHHHHHHHHHCCCCCCHHHHHHCCCCHHHHCCCCCCEEEECCCCCCCCCCCCEEEE KRHDLEERQSNQPSDIFRQNAEINVSSQTFLRGMSSASSRIVIDSVVQ ECCCCHHHHCCCCHHHHHCCCCCCCCHHHHHHHHCCCCCEEEEHECCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA