| Definition | Helicobacter pylori Shi470, complete genome. |
|---|---|
| Accession | NC_010698 |
| Length | 1,608,548 |
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The map label for this gene is 188527911
Identifier: 188527911
GI number: 188527911
Start: 1144394
End: 1145206
Strand: Reverse
Name: 188527911
Synonym: HPSH_05810
Alternate gene names: NA
Gene position: 1145206-1144394 (Counterclockwise)
Preceding gene: 188527912
Following gene: 188527910
Centisome position: 71.2
GC content: 34.32
Gene sequence:
>813_bases ATGAGTAGGAGTGCGATCTTTGTTGTTTCTGGCTTTTTAGCGTTCTTGCTCTATGCTTTGTTATTGTATGGTTTGTTATT AGAAAGGCACAATGAAGAAGCGGAGAAAATTCTTTTGGATTTGGGCAAAAAAAACGAACAAGTCATTGATTTGAATTTAG AAGATTTGCCAAGCGATGAAAAAAAAGAAGAAAAAGTAGAAGAAAAAAAAGAAGAAAAAGTAGTTGAAAAAAATGCAACT GATAAGGAGGGCGATTTTATTGATCCTAAAGAACAAGAAGAAAGCCTTGAAAATATTTTTTCTTCACTCAATGATTTTCA AGAAAAGACAGACACAAACGCTCAAAAAGATGAGCAAAAAAATGAACAAGAAGAAGAGCAAAGGCGTTTAAAAGAGCAGC AACGCTTGAGAAAAAACCAAAAAAATCAAGAGATGTTGAAAGGTTTGCAACAGAATTTGGATCAATTCGCGCAAAAACTA GAAAGCGTTAAAAACAAGACTTTAGATTTGCAAATCCCTAAACAAGATGGGGTTGATGAAAAAGCCTATCAAGAGTGGTA TGCTCAAATCTATCAGATTTTATATAAAGGTTGGAAAGGGGTTTTTTACCACAAGGCTTCAGTGAGCGCGCTGATTATGA TCACTAAAGATGGAGGGTTTGATTATACCATTCTTAGCTACTCCGATTTTAAGGATTATAACAAGAGCGTGATAACCCTT TTAGATGATTTAAAGAAAGTGGATTTCCCCCCATATCCTGGAGGAAACATGATTTCTATTAAAGTTAATTTCACCACTAA GGAAGAACAATGA
Upstream 100 bases:
>100_bases GACTTATGACAAAGTGATTTATTTGTTAAAAACGATTAAAGAAGCGGGTTTTTTAAAAGTTTCTTTAATCACAAGTCCTT AAAAAGTAGGGCTAATTTGC
Downstream 100 bases:
>100_bases GGTATTTATGGCTTTTTTTAATATGCACTATAGGGCTTTTTGCAACAGATAAAACACTAGATATTATTAAAACCATTCAA AAACTTCCTAAGATTGAAGT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 270; Mature: 269
Protein sequence:
>270_residues MSRSAIFVVSGFLAFLLYALLLYGLLLERHNEEAEKILLDLGKKNEQVIDLNLEDLPSDEKKEEKVEEKKEEKVVEKNAT DKEGDFIDPKEQEESLENIFSSLNDFQEKTDTNAQKDEQKNEQEEEQRRLKEQQRLRKNQKNQEMLKGLQQNLDQFAQKL ESVKNKTLDLQIPKQDGVDEKAYQEWYAQIYQILYKGWKGVFYHKASVSALIMITKDGGFDYTILSYSDFKDYNKSVITL LDDLKKVDFPPYPGGNMISIKVNFTTKEEQ
Sequences:
>Translated_270_residues MSRSAIFVVSGFLAFLLYALLLYGLLLERHNEEAEKILLDLGKKNEQVIDLNLEDLPSDEKKEEKVEEKKEEKVVEKNAT DKEGDFIDPKEQEESLENIFSSLNDFQEKTDTNAQKDEQKNEQEEEQRRLKEQQRLRKNQKNQEMLKGLQQNLDQFAQKL ESVKNKTLDLQIPKQDGVDEKAYQEWYAQIYQILYKGWKGVFYHKASVSALIMITKDGGFDYTILSYSDFKDYNKSVITL LDDLKKVDFPPYPGGNMISIKVNFTTKEEQ >Mature_269_residues SRSAIFVVSGFLAFLLYALLLYGLLLERHNEEAEKILLDLGKKNEQVIDLNLEDLPSDEKKEEKVEEKKEEKVVEKNATD KEGDFIDPKEQEESLENIFSSLNDFQEKTDTNAQKDEQKNEQEEEQRRLKEQQRLRKNQKNQEMLKGLQQNLDQFAQKLE SVKNKTLDLQIPKQDGVDEKAYQEWYAQIYQILYKGWKGVFYHKASVSALIMITKDGGFDYTILSYSDFKDYNKSVITLL DDLKKVDFPPYPGGNMISIKVNFTTKEEQ
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 31556; Mature: 31425
Theoretical pI: Translated: 4.61; Mature: 4.61
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 1.5 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 1.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSRSAIFVVSGFLAFLLYALLLYGLLLERHNEEAEKILLDLGKKNEQVIDLNLEDLPSDE CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCEEEECCHHHCCCCH KKEEKVEEKKEEKVVEKNATDKEGDFIDPKEQEESLENIFSSLNDFQEKTDTNAQKDEQK HHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH NEQEEEQRRLKEQQRLRKNQKNQEMLKGLQQNLDQFAQKLESVKNKTLDLQIPKQDGVDE HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCH KAYQEWYAQIYQILYKGWKGVFYHKASVSALIMITKDGGFDYTILSYSDFKDYNKSVITL HHHHHHHHHHHHHHHHHCCHHEEEECCCEEEEEEEECCCCCEEEEECHHHHHHHHHHHHH LDDLKKVDFPPYPGGNMISIKVNFTTKEEQ HHHHHHCCCCCCCCCCEEEEEEEECCCCCC >Mature Secondary Structure SRSAIFVVSGFLAFLLYALLLYGLLLERHNEEAEKILLDLGKKNEQVIDLNLEDLPSDE CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCEEEECCHHHCCCCH KKEEKVEEKKEEKVVEKNATDKEGDFIDPKEQEESLENIFSSLNDFQEKTDTNAQKDEQK HHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH NEQEEEQRRLKEQQRLRKNQKNQEMLKGLQQNLDQFAQKLESVKNKTLDLQIPKQDGVDE HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCH KAYQEWYAQIYQILYKGWKGVFYHKASVSALIMITKDGGFDYTILSYSDFKDYNKSVITL HHHHHHHHHHHHHHHHHCCHHEEEECCCEEEEEEEECCCCCEEEEECHHHHHHHHHHHHH LDDLKKVDFPPYPGGNMISIKVNFTTKEEQ HHHHHHCCCCCCCCCCEEEEEEEECCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA