Click here to switch to the map view.

The map label for this gene is exbD [C]

Identifier: 188527912

GI number: 188527912

Start: 1145225

End: 1145626

Strand: Reverse

Name: exbD [C]

Synonym: HPSH_05815

Alternate gene names: 188527912

Gene position: 1145626-1145225 (Counterclockwise)

Preceding gene: 188527913

Following gene: 188527911

Centisome position: 71.22

GC content: 35.82

Gene sequence:

>402_bases
ATGAATTATGATAACTATTGGGATGAGGACAAACCAGAACTCAATATCACGCCCTTAGTGGATGTGATGCTTGTTTTATT
GGCTATTCTTATGGTAACGACGCCCACTCTTACTTATAAAGAAGAGATTGCTTTGCCTTCTGGCTCAAAAACTGCTAGAG
CCACTCAAGATAAAACGATAGAGATCCGTATGGATAAAGACGCAAAAATCTATATAGATAGTCAAACCTATGAATACAAC
TCCTTCCCGGATACTTTTAACTTGCTTTCTAAGAAATACGATAAAGATACTAGGGTTAGTATCCGCGCGGACAAACGATT
GACTTATGACAAAGTGATTTATTTGTTAAAAACGATTAAAGAAGCGGGTTTTTTAAAAGTTTCTTTAATCACAAGTCCTT
AA

Upstream 100 bases:

>100_bases
TCGGTTTATGTGCAGATGCAAGTGGATATTTTGTCTTCTAAAAAATAAAGCTTTTAAGGGGATTTTATAAATATCTTAAA
TAGGGAGTTAGAAGGTTTTT

Downstream 100 bases:

>100_bases
AAAGTAGGGCTAATTTGCATGAGTAGGAGTGCGATCTTTGTTGTTTCTGGCTTTTTAGCGTTCTTGCTCTATGCTTTGTT
ATTGTATGGTTTGTTATTAG

Product: biopolymer transport protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 133; Mature: 133

Protein sequence:

>133_residues
MNYDNYWDEDKPELNITPLVDVMLVLLAILMVTTPTLTYKEEIALPSGSKTARATQDKTIEIRMDKDAKIYIDSQTYEYN
SFPDTFNLLSKKYDKDTRVSIRADKRLTYDKVIYLLKTIKEAGFLKVSLITSP

Sequences:

>Translated_133_residues
MNYDNYWDEDKPELNITPLVDVMLVLLAILMVTTPTLTYKEEIALPSGSKTARATQDKTIEIRMDKDAKIYIDSQTYEYN
SFPDTFNLLSKKYDKDTRVSIRADKRLTYDKVIYLLKTIKEAGFLKVSLITSP
>Mature_133_residues
MNYDNYWDEDKPELNITPLVDVMLVLLAILMVTTPTLTYKEEIALPSGSKTARATQDKTIEIRMDKDAKIYIDSQTYEYN
SFPDTFNLLSKKYDKDTRVSIRADKRLTYDKVIYLLKTIKEAGFLKVSLITSP

Specific function: Involved In The Tonb-Dependent Energy-Dependent Transport Of Various Receptor-Bound Substrates. [C]

COG id: COG0848

COG function: function code U; Biopolymer transport protein

Gene ontology:

Cell location: Cell inner membrane; Single-pass type II membrane protein (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the exbD/tolR family [H]

Homologues:

Organism=Escherichia coli, GI1789380, Length=118, Percent_Identity=31.3559322033898, Blast_Score=72, Evalue=2e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003400 [H]

Pfam domain/function: PF02472 ExbD [H]

EC number: NA

Molecular weight: Translated: 15384; Mature: 15384

Theoretical pI: Translated: 5.27; Mature: 5.27

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNYDNYWDEDKPELNITPLVDVMLVLLAILMVTTPTLTYKEEIALPSGSKTARATQDKTI
CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHCCCCCCCCCCCCCCCCEE
EIRMDKDAKIYIDSQTYEYNSFPDTFNLLSKKYDKDTRVSIRADKRLTYDKVIYLLKTIK
EEEECCCCEEEECCCCEECCCCCHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHH
EAGFLKVSLITSP
HCCCEEEEEEECC
>Mature Secondary Structure
MNYDNYWDEDKPELNITPLVDVMLVLLAILMVTTPTLTYKEEIALPSGSKTARATQDKTI
CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHCCCCCCCCCCCCCCCCEE
EIRMDKDAKIYIDSQTYEYNSFPDTFNLLSKKYDKDTRVSIRADKRLTYDKVIYLLKTIK
EEEECCCCEEEECCCCEECCCCCHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHH
EAGFLKVSLITSP
HCCCEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9923682 [H]