| Definition | Helicobacter pylori Shi470, complete genome. |
|---|---|
| Accession | NC_010698 |
| Length | 1,608,548 |
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The map label for this gene is porB [H]
Identifier: 188527891
GI number: 188527891
Start: 1126650
End: 1127594
Strand: Direct
Name: porB [H]
Synonym: HPSH_05710
Alternate gene names: 188527891
Gene position: 1126650-1127594 (Clockwise)
Preceding gene: 188527890
Following gene: 188527892
Centisome position: 70.04
GC content: 43.39
Gene sequence:
>945_bases ATGGTAAAAGAAGTCAAAACACTCAAAGGTTTTAGCCAAAGCGCTGAAAAATTCCAAGGCTCACACTTGCTTTGTCCGGG TTGTGGGCATGGCATTATTGTGCGCGAAGTTTTAAACGCTGTAGATGGGCCTATTGTTTTAGGCAATTCTACCGGTTGTT TAGAAGTATGCTCGGCGGTGTATCCGCACACTTCATGGGATGTGCCTTGGATTCATATTGGTTTTGAAAATGGCTCTACG GCGATTTCAGGGGTGGAAGCGATGTGTAAAGCGCTAGTGAATAAGGGCCGCTATCAAGGTCAAAAACCAAAATTTGTGGC GTTTGGGGGCGATGGGGCCAGTTATGATATTGGTCTTCAATTCATCAGCGGTTGCATGGAAAGAGGGCATGACATGACTT ACATTTGCCTAGATAATGAAAACTACGCCAATACCGGCGGTCAAAGAAGCGGCTCTACGCCATTAGGGGCTAGCACTTCT ACCACGCCATCAGGATCGGTTAGCTTTGGTAAAAAAGAAAAGAAAAAAGACATCGTCAATATCATGGCAAGTCATGGAGT CCCTTATGTGGCGCAGCTCTCGCCTAACAAATGGAAAGACATGAACAAAAAGATTAAAACCGCGCTAGACACTGAAGGGC CTTGCTTCATCAACGCTCTTAGCCCATGCACGACTGAATGGAAATTTGAATCCAATAAAACCATTGAATTAGCGGATATG GCTGTGGATAGCTTGATGTTCCCCCTATTTGAAATCTTTAATGGCAGGGAATTGAAAATCACTTACCGCCCAAGAAATAT CATTCCTGTAAGGGATTATTTAGGGGCTCAAAAGCGCTTCAAACACCTTTTCAAAAAAGAAAACGAACACATTATTGAAG AATTGCAAAAAGATGTGAATGAGCGTTGGGAATACTTGCAACGCAGAGAAGAGGCTAAAGTATAA
Upstream 100 bases:
>100_bases AATCAATGAAGACGCTCTTAAAGGCACGCTCACGCACCCTACCCAACAATTCGTAGGCTTGCACGGTCCTAAAATGAGCT TTTTTTAAAAAGGAAATATC
Downstream 100 bases:
>100_bases CCCTTCTCTCAAATCAAGGCGCTTTTTGGCGTCTTGTGTGATTTTCCCCCTTGACTTTTTAAACCCCTTTAAAGTAACAT AAATCCCATTTTGATTGTAA
Product: pyruvate ferredoxin oxidoreductase, beta subunit
Products: NA
Alternate protein names: Pyruvate oxidoreductase beta chain; POR; Pyruvic-ferredoxin oxidoreductase subunit beta [H]
Number of amino acids: Translated: 314; Mature: 314
Protein sequence:
>314_residues MVKEVKTLKGFSQSAEKFQGSHLLCPGCGHGIIVREVLNAVDGPIVLGNSTGCLEVCSAVYPHTSWDVPWIHIGFENGST AISGVEAMCKALVNKGRYQGQKPKFVAFGGDGASYDIGLQFISGCMERGHDMTYICLDNENYANTGGQRSGSTPLGASTS TTPSGSVSFGKKEKKKDIVNIMASHGVPYVAQLSPNKWKDMNKKIKTALDTEGPCFINALSPCTTEWKFESNKTIELADM AVDSLMFPLFEIFNGRELKITYRPRNIIPVRDYLGAQKRFKHLFKKENEHIIEELQKDVNERWEYLQRREEAKV
Sequences:
>Translated_314_residues MVKEVKTLKGFSQSAEKFQGSHLLCPGCGHGIIVREVLNAVDGPIVLGNSTGCLEVCSAVYPHTSWDVPWIHIGFENGST AISGVEAMCKALVNKGRYQGQKPKFVAFGGDGASYDIGLQFISGCMERGHDMTYICLDNENYANTGGQRSGSTPLGASTS TTPSGSVSFGKKEKKKDIVNIMASHGVPYVAQLSPNKWKDMNKKIKTALDTEGPCFINALSPCTTEWKFESNKTIELADM AVDSLMFPLFEIFNGRELKITYRPRNIIPVRDYLGAQKRFKHLFKKENEHIIEELQKDVNERWEYLQRREEAKV >Mature_314_residues MVKEVKTLKGFSQSAEKFQGSHLLCPGCGHGIIVREVLNAVDGPIVLGNSTGCLEVCSAVYPHTSWDVPWIHIGFENGST AISGVEAMCKALVNKGRYQGQKPKFVAFGGDGASYDIGLQFISGCMERGHDMTYICLDNENYANTGGQRSGSTPLGASTS TTPSGSVSFGKKEKKKDIVNIMASHGVPYVAQLSPNKWKDMNKKIKTALDTEGPCFINALSPCTTEWKFESNKTIELADM AVDSLMFPLFEIFNGRELKITYRPRNIIPVRDYLGAQKRFKHLFKKENEHIIEELQKDVNERWEYLQRREEAKV
Specific function: Oxidoreductase Required For The Transfer Of Electrons From Pyruvate To Flavodoxin (Potential). [C]
COG id: COG1013
COG function: function code C; Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, beta subunit
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Escherichia coli, GI1787642, Length=215, Percent_Identity=29.7674418604651, Blast_Score=78, Evalue=7e-16,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR011766 [H]
Pfam domain/function: PF02775 TPP_enzyme_C [H]
EC number: =1.2.7.1 [H]
Molecular weight: Translated: 34910; Mature: 34910
Theoretical pI: Translated: 8.15; Mature: 8.15
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.9 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 5.4 %Cys+Met (Translated Protein) 2.9 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 5.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MVKEVKTLKGFSQSAEKFQGSHLLCPGCGHGIIVREVLNAVDGPIVLGNSTGCLEVCSAV CCCHHHHHHHHHHHHHHHCCCEEECCCCCCCHHHHHHHHHCCCCEEECCCCCHHHHHHHH YPHTSWDVPWIHIGFENGSTAISGVEAMCKALVNKGRYQGQKPKFVAFGGDGASYDIGLQ CCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCHHHHHH FISGCMERGHDMTYICLDNENYANTGGQRSGSTPLGASTSTTPSGSVSFGKKEKKKDIVN HHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH IMASHGVPYVAQLSPNKWKDMNKKIKTALDTEGPCFINALSPCTTEWKFESNKTIELADM HHHHCCCCEEEECCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCEEECCCCEEEHHHH AVDSLMFPLFEIFNGRELKITYRPRNIIPVRDYLGAQKRFKHLFKKENEHIIEELQKDVN HHHHHHHHHHHHHCCCEEEEEECCCCCCCHHHHHCHHHHHHHHHHCCCHHHHHHHHHHHH ERWEYLQRREEAKV HHHHHHHHHHHCCC >Mature Secondary Structure MVKEVKTLKGFSQSAEKFQGSHLLCPGCGHGIIVREVLNAVDGPIVLGNSTGCLEVCSAV CCCHHHHHHHHHHHHHHHCCCEEECCCCCCCHHHHHHHHHCCCCEEECCCCCHHHHHHHH YPHTSWDVPWIHIGFENGSTAISGVEAMCKALVNKGRYQGQKPKFVAFGGDGASYDIGLQ CCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCHHHHHH FISGCMERGHDMTYICLDNENYANTGGQRSGSTPLGASTSTTPSGSVSFGKKEKKKDIVN HHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH IMASHGVPYVAQLSPNKWKDMNKKIKTALDTEGPCFINALSPCTTEWKFESNKTIELADM HHHHCCCCEEEECCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCEEECCCCEEEHHHH AVDSLMFPLFEIFNGRELKITYRPRNIIPVRDYLGAQKRFKHLFKKENEHIIEELQKDVN HHHHHHHHHHHHHCCCEEEEEECCCCCCCHHHHHCHHHHHHHHHHCCCHHHHHHHHHHHH ERWEYLQRREEAKV HHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 8688087 [H]