Click here to switch to the map view.

The map label for this gene is 188527862

Identifier: 188527862

GI number: 188527862

Start: 1095662

End: 1097890

Strand: Reverse

Name: 188527862

Synonym: HPSH_05550

Alternate gene names: NA

Gene position: 1097890-1095662 (Counterclockwise)

Preceding gene: 188527863

Following gene: 188527859

Centisome position: 68.25

GC content: 40.78

Gene sequence:

>2229_bases
ATGCTAAGATTCGTTAGTAAAACGATTTGCTTGTCTTTAATCGGCTTGTTCAACCCTTTAGAAGCCTTTCAAAAACACCA
AAAAGACGGCTTTTTTATAGAAGCCGGGTTTGAGACCGGGTTATTAGAAGGCGCGCAAACTAAAGAAGAAGCGACAGCTC
AAAACACCCAAAAAATCCAAAAAAACCCCCTAACCCACCCACAAACTAACGAACAACCTAAAGAACAAAGCAAAAGCGAT
ACAGCCACCCCACAAAGCGTTTATGGGAGGTACTACATCCTCCAAAGCACCATTTTAGAAAAAGCGACTGAGTTATTCAC
AGCGGCTAATATCAACGGCAACGGCTTAACTTTTTATTCTCAAAATCCTGTGTATGTGATGGCATACAATAAGGATAATG
CCGAGTTTGAAGGCTATGGCAATAACAGCGTGGTTGTGATACAAAACTTTCTGCCCTACAATTTAAACAATATTGAGCTG
AGTTATACAGACGCTCAAGGCAAGGTAGTCAATTTAGGCGTGATAGAAACTATCCCTAAAGATTCTCAAATCATTCTGCC
GGCAAGCCTATTTAATAATTTTTCAAACGATTCGCCATTCAACTCTGATGGCCTCCAACAACTCCAAACCACTACCACCC
CCTTTTCTGACGCTAACACGCAGAGTTTGTTTGAAAAGCTCAGTCAAATCACGACCAATCTTCAAATGACTTATGAGAAT
ACAGACCCATTTTCTAGCGGCAACAATGATCCTAGTGGCCCTCTTGCTTCCCCTAAACCTCATTATGAATGCCCTGGTTA
TAAAAAGAGTTGTCAAGTCGCTTCGGTGTCTTTCACCCCACAAACCGCAGAAGAATTGACCAATTTAATGTTAGATATGA
TTGCGGTGTTTGACTCCAAATCTTGGGAAGAAGCCGTTTTAAACGCTCCTTTCCAATTCGCTAACAGCCCATCAGAGTGT
GGTATTGATTACCCTAAATGCGTGAATCCTTTTAATAACGGGCTTGTTGATCCTAAAAATGAAAAATATGTGCTAACCCC
AGAAGAAGTTATCAATAGTTATAGAGTCGCTAATGAACTTACGGTGAATCTCTTGAATGCGGCCAAGGGGTTTTTAGGGC
TAGGATCCCAACTAGGTAGTGCAAACGCTCCCGGTGATAACGGCTTCAATCAAGGTGTTTTAGGGATAGCGCCTTTTGCC
TTAAACCCTGAAAAATTGTTTGGCAAAAATTTGAATAAAGTTGTTATTTTGGCATTAAGAGATATTATCCATGAATACGG
CCATACTTTAGGTTATACCCATAATGGGAACATGACTTATCAAAGGGTGCGTTTGTGCCAAGAAGGAAACGGGCCAGAAG
TGCGGTGTGAAGGCGGGCATGAAGTGGAGAAAAACGGGAAAGAAGAGCTAGAATTTAATAACGGGCATGAAGTGAAAGAC
CATGATGGTTACGACTATAATGTTTGCTCTCGTTTTGGCGGCAAAAATCAGCCCGCTTTCCCTAGCAATTACCCCAATTC
CATCTATACGAATTGCGCTCAAGTCCCCGCTGGGCTTATAGGGGTTACCACCGCTGTTTGGCAACAGCTCATCAATCAAA
ACGCTCTTCCCATTAATTTCGCTAATTTGAGCAGCCAAGCCAACTATTTAGACGCCAGTTTGAACGCAAGAGCTTTTGTT
GGATCTGTGTTTAATGCGTTCAATCAAAGCTTTTCAACTTCTAGCGCCCAACAATCTTTTAGAAGCCCTATTTTAGGGGT
TAATGTTAAAATAGGCTACCAACATTATTTCAATGACTACATAGGGTTAGCCTATTATGGCATCATCAAATACAACTACG
CTCAAGCTAACGATGAAAAAAACCAGCAATTAAGCTATGGTGGGGGAATGGATGTGTTGTTTGATTTCATCACCACTTAT
ACCAATAAAAAGCAAGGCAATCCCACTAAAAAAGTTTTTGCTTCCTCTTTTGGGGTGTTTGGGGGGTTAAGGGGCTTATA
CAATAGCTACTATGTTTTCAACCAAGTCAAAGGGAGCGGTAATTTAGATATAGTTACTGGGTTTAATTACCGCTACAAGC
ATTCTAAATATTCTGTAGGCATTAGCGTTCCTTTAATCCAAAGCGATATTAAAATCGCTTCTAATAATGGCATCTATGCG
GACTCTGTTGTTTTGAATGAAGGGGGCAGTCATTTTAAAGTGTTTTTTAATTACGGGTGGATTTTCTAA

Upstream 100 bases:

>100_bases
ATACCGCAATTTCTCAAAAATGTATTATAATACGAAACTTCAGTTTGATTGAGTCACAAACTCTTTGAGAACAAAACGCT
AAACCGTTTAGGAAATTACC

Downstream 100 bases:

>100_bases
GATTTAAAACCCCCAATAACCCCCTAAACTTGCGCGACACTCGCCACAAACACGCATGCGCTCTCAGATTTTAGCACCAT
ATCCAACGGGATGCGATAAA

Product: putative outer membrane protein

Products: NA

Alternate protein names: Hom Family Outer Membrane Protein; Outer Membrane Protein HomA; Outer Membrane Protein HomD; Outer Membrane Protein HomB

Number of amino acids: Translated: 742; Mature: 742

Protein sequence:

>742_residues
MLRFVSKTICLSLIGLFNPLEAFQKHQKDGFFIEAGFETGLLEGAQTKEEATAQNTQKIQKNPLTHPQTNEQPKEQSKSD
TATPQSVYGRYYILQSTILEKATELFTAANINGNGLTFYSQNPVYVMAYNKDNAEFEGYGNNSVVVIQNFLPYNLNNIEL
SYTDAQGKVVNLGVIETIPKDSQIILPASLFNNFSNDSPFNSDGLQQLQTTTTPFSDANTQSLFEKLSQITTNLQMTYEN
TDPFSSGNNDPSGPLASPKPHYECPGYKKSCQVASVSFTPQTAEELTNLMLDMIAVFDSKSWEEAVLNAPFQFANSPSEC
GIDYPKCVNPFNNGLVDPKNEKYVLTPEEVINSYRVANELTVNLLNAAKGFLGLGSQLGSANAPGDNGFNQGVLGIAPFA
LNPEKLFGKNLNKVVILALRDIIHEYGHTLGYTHNGNMTYQRVRLCQEGNGPEVRCEGGHEVEKNGKEELEFNNGHEVKD
HDGYDYNVCSRFGGKNQPAFPSNYPNSIYTNCAQVPAGLIGVTTAVWQQLINQNALPINFANLSSQANYLDASLNARAFV
GSVFNAFNQSFSTSSAQQSFRSPILGVNVKIGYQHYFNDYIGLAYYGIIKYNYAQANDEKNQQLSYGGGMDVLFDFITTY
TNKKQGNPTKKVFASSFGVFGGLRGLYNSYYVFNQVKGSGNLDIVTGFNYRYKHSKYSVGISVPLIQSDIKIASNNGIYA
DSVVLNEGGSHFKVFFNYGWIF

Sequences:

>Translated_742_residues
MLRFVSKTICLSLIGLFNPLEAFQKHQKDGFFIEAGFETGLLEGAQTKEEATAQNTQKIQKNPLTHPQTNEQPKEQSKSD
TATPQSVYGRYYILQSTILEKATELFTAANINGNGLTFYSQNPVYVMAYNKDNAEFEGYGNNSVVVIQNFLPYNLNNIEL
SYTDAQGKVVNLGVIETIPKDSQIILPASLFNNFSNDSPFNSDGLQQLQTTTTPFSDANTQSLFEKLSQITTNLQMTYEN
TDPFSSGNNDPSGPLASPKPHYECPGYKKSCQVASVSFTPQTAEELTNLMLDMIAVFDSKSWEEAVLNAPFQFANSPSEC
GIDYPKCVNPFNNGLVDPKNEKYVLTPEEVINSYRVANELTVNLLNAAKGFLGLGSQLGSANAPGDNGFNQGVLGIAPFA
LNPEKLFGKNLNKVVILALRDIIHEYGHTLGYTHNGNMTYQRVRLCQEGNGPEVRCEGGHEVEKNGKEELEFNNGHEVKD
HDGYDYNVCSRFGGKNQPAFPSNYPNSIYTNCAQVPAGLIGVTTAVWQQLINQNALPINFANLSSQANYLDASLNARAFV
GSVFNAFNQSFSTSSAQQSFRSPILGVNVKIGYQHYFNDYIGLAYYGIIKYNYAQANDEKNQQLSYGGGMDVLFDFITTY
TNKKQGNPTKKVFASSFGVFGGLRGLYNSYYVFNQVKGSGNLDIVTGFNYRYKHSKYSVGISVPLIQSDIKIASNNGIYA
DSVVLNEGGSHFKVFFNYGWIF
>Mature_742_residues
MLRFVSKTICLSLIGLFNPLEAFQKHQKDGFFIEAGFETGLLEGAQTKEEATAQNTQKIQKNPLTHPQTNEQPKEQSKSD
TATPQSVYGRYYILQSTILEKATELFTAANINGNGLTFYSQNPVYVMAYNKDNAEFEGYGNNSVVVIQNFLPYNLNNIEL
SYTDAQGKVVNLGVIETIPKDSQIILPASLFNNFSNDSPFNSDGLQQLQTTTTPFSDANTQSLFEKLSQITTNLQMTYEN
TDPFSSGNNDPSGPLASPKPHYECPGYKKSCQVASVSFTPQTAEELTNLMLDMIAVFDSKSWEEAVLNAPFQFANSPSEC
GIDYPKCVNPFNNGLVDPKNEKYVLTPEEVINSYRVANELTVNLLNAAKGFLGLGSQLGSANAPGDNGFNQGVLGIAPFA
LNPEKLFGKNLNKVVILALRDIIHEYGHTLGYTHNGNMTYQRVRLCQEGNGPEVRCEGGHEVEKNGKEELEFNNGHEVKD
HDGYDYNVCSRFGGKNQPAFPSNYPNSIYTNCAQVPAGLIGVTTAVWQQLINQNALPINFANLSSQANYLDASLNARAFV
GSVFNAFNQSFSTSSAQQSFRSPILGVNVKIGYQHYFNDYIGLAYYGIIKYNYAQANDEKNQQLSYGGGMDVLFDFITTY
TNKKQGNPTKKVFASSFGVFGGLRGLYNSYYVFNQVKGSGNLDIVTGFNYRYKHSKYSVGISVPLIQSDIKIASNNGIYA
DSVVLNEGGSHFKVFFNYGWIF

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 81980; Mature: 81980

Theoretical pI: Translated: 5.38; Mature: 5.38

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLRFVSKTICLSLIGLFNPLEAFQKHQKDGFFIEAGFETGLLEGAQTKEEATAQNTQKIQ
CCHHHHHHHHHHHHHHCCHHHHHHHHCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHH
KNPLTHPQTNEQPKEQSKSDTATPQSVYGRYYILQSTILEKATELFTAANINGNGLTFYS
HCCCCCCCCCCCHHHHCCCCCCCCHHHHCCCEEHHHHHHHHHHHHHHEECCCCCEEEEEE
QNPVYVMAYNKDNAEFEGYGNNSVVVIQNFLPYNLNNIELSYTDAQGKVVNLGVIETIPK
CCCEEEEEECCCCCCEECCCCCCEEEEECCCCCCCCCEEEEEECCCCEEEEEEEEEECCC
DSQIILPASLFNNFSNDSPFNSDGLQQLQTTTTPFSDANTQSLFEKLSQITTNLQMTYEN
CCEEEEEHHHHCCCCCCCCCCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCEEEEECC
TDPFSSGNNDPSGPLASPKPHYECPGYKKSCQVASVSFTPQTAEELTNLMLDMIAVFDSK
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHCCC
SWEEAVLNAPFQFANSPSECGIDYPKCVNPFNNGLVDPKNEKYVLTPEEVINSYRVANEL
CHHHHHHCCCHHHCCCCHHCCCCCHHHCCHHHCCCCCCCCCEEEECHHHHHHHHHHHHHH
TVNLLNAAKGFLGLGSQLGSANAPGDNGFNQGVLGIAPFALNPEKLFGKNLNKVVILALR
HHHHHHHHHHHHHCCHHCCCCCCCCCCCCCCCCEEEECCCCCHHHHHCCCCCHHHHHHHH
DIIHEYGHTLGYTHNGNMTYQRVRLCQEGNGPEVRCEGGHEVEKNGKEELEFNNGHEVKD
HHHHHHCCCCCEEECCCCHHHHHHHHHCCCCCEEEECCCCCHHCCCCHHCCCCCCCCCCC
HDGYDYNVCSRFGGKNQPAFPSNYPNSIYTNCAQVPAGLIGVTTAVWQQLINQNALPINF
CCCCCHHHHHHCCCCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCEEEE
ANLSSQANYLDASLNARAFVGSVFNAFNQSFSTSSAQQSFRSPILGVNVKIGYQHYFNDY
CCCCCCCCCEECCCCHHHHHHHHHHHHHHCCCCHHHHHHHCCCEEEEEEEECHHHHHHHH
IGLAYYGIIKYNYAQANDEKNQQLSYGGGMDVLFDFITTYTNKKQGNPTKKVFASSFGVF
HHHHEEEEEEEEECCCCCCCCCEECCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHH
GGLRGLYNSYYVFNQVKGSGNLDIVTGFNYRYKHSKYSVGISVPLIQSDIKIASNNGIYA
HHHHHHHHCEEEEEEECCCCCEEEEECCCEEEECCEEEEEEEEEEEECCEEEECCCCEEE
DSVVLNEGGSHFKVFFNYGWIF
EEEEEECCCCEEEEEEECCCCC
>Mature Secondary Structure
MLRFVSKTICLSLIGLFNPLEAFQKHQKDGFFIEAGFETGLLEGAQTKEEATAQNTQKIQ
CCHHHHHHHHHHHHHHCCHHHHHHHHCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHH
KNPLTHPQTNEQPKEQSKSDTATPQSVYGRYYILQSTILEKATELFTAANINGNGLTFYS
HCCCCCCCCCCCHHHHCCCCCCCCHHHHCCCEEHHHHHHHHHHHHHHEECCCCCEEEEEE
QNPVYVMAYNKDNAEFEGYGNNSVVVIQNFLPYNLNNIELSYTDAQGKVVNLGVIETIPK
CCCEEEEEECCCCCCEECCCCCCEEEEECCCCCCCCCEEEEEECCCCEEEEEEEEEECCC
DSQIILPASLFNNFSNDSPFNSDGLQQLQTTTTPFSDANTQSLFEKLSQITTNLQMTYEN
CCEEEEEHHHHCCCCCCCCCCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCEEEEECC
TDPFSSGNNDPSGPLASPKPHYECPGYKKSCQVASVSFTPQTAEELTNLMLDMIAVFDSK
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHCCC
SWEEAVLNAPFQFANSPSECGIDYPKCVNPFNNGLVDPKNEKYVLTPEEVINSYRVANEL
CHHHHHHCCCHHHCCCCHHCCCCCHHHCCHHHCCCCCCCCCEEEECHHHHHHHHHHHHHH
TVNLLNAAKGFLGLGSQLGSANAPGDNGFNQGVLGIAPFALNPEKLFGKNLNKVVILALR
HHHHHHHHHHHHHCCHHCCCCCCCCCCCCCCCCEEEECCCCCHHHHHCCCCCHHHHHHHH
DIIHEYGHTLGYTHNGNMTYQRVRLCQEGNGPEVRCEGGHEVEKNGKEELEFNNGHEVKD
HHHHHHCCCCCEEECCCCHHHHHHHHHCCCCCEEEECCCCCHHCCCCHHCCCCCCCCCCC
HDGYDYNVCSRFGGKNQPAFPSNYPNSIYTNCAQVPAGLIGVTTAVWQQLINQNALPINF
CCCCCHHHHHHCCCCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCEEEE
ANLSSQANYLDASLNARAFVGSVFNAFNQSFSTSSAQQSFRSPILGVNVKIGYQHYFNDY
CCCCCCCCCEECCCCHHHHHHHHHHHHHHCCCCHHHHHHHCCCEEEEEEEECHHHHHHHH
IGLAYYGIIKYNYAQANDEKNQQLSYGGGMDVLFDFITTYTNKKQGNPTKKVFASSFGVF
HHHHEEEEEEEEECCCCCCCCCEECCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHH
GGLRGLYNSYYVFNQVKGSGNLDIVTGFNYRYKHSKYSVGISVPLIQSDIKIASNNGIYA
HHHHHHHHCEEEEEEECCCCCEEEEECCCEEEECCEEEEEEEEEEEECCEEEECCCCEEE
DSVVLNEGGSHFKVFFNYGWIF
EEEEEECCCCEEEEEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA