Definition Helicobacter pylori Shi470, complete genome.
Accession NC_010698
Length 1,608,548

Click here to switch to the map view.

The map label for this gene is 188527515

Identifier: 188527515

GI number: 188527515

Start: 706546

End: 706959

Strand: Direct

Name: 188527515

Synonym: HPSH_03685

Alternate gene names: NA

Gene position: 706546-706959 (Clockwise)

Preceding gene: 188527514

Following gene: 188527521

Centisome position: 43.92

GC content: 35.51

Gene sequence:

>414_bases
ATGCGTATAGTTAAAAATTTATTTCTTGTATCGTTTGTGGCTTATAGCAGCGCGTTCGCAGTGGATTTAGAAACCGAAAC
TAAAAGCGAAAAAAAAAGCGATAAAAAGTTTTACAAACTCCATAAAAACCATGGGTTAGAAACCGAGGCAAAAAACGACA
AAAAGCTTTATGATTTCACTAAAAACAGTGCTTTAGAAGGCATAAATTTAGAAAAAAGCCCTACCCTTAAAAGCCATAAA
AAAAGCGATAAAAAGTTTTACAAACAACTCGCTAAAAACAATATCGCTGAAGGCGTGAGCATGCCGGTTGTTAATTTCAA
TAAAGCTCTGTCTTTTGGGCCTTATTTTGAAAGGACTAAAAGCAAAAAAACCCAATACATGGACGGCGGGTTGATGATGC
ACATCCGCTTTTAA

Upstream 100 bases:

>100_bases
CGAGCGTGGTCGGTGTTTTCACTCAAACGCGCTTGTATTTTCTAATAGTTATTTCTAACATGCTAGGGTGGTGTGATAGA
AAAAGACTATAGGAGATCTT

Downstream 100 bases:

>100_bases
GCCCTTATTCATAATCCAAAAATGCATGCGTTTTAAGGGCTAGGGTTTTGGGGAAATATTGCACAAACAAATCCAAAAAC
ACTTTTTCGCCAAAGAAATC

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 137; Mature: 137

Protein sequence:

>137_residues
MRIVKNLFLVSFVAYSSAFAVDLETETKSEKKSDKKFYKLHKNHGLETEAKNDKKLYDFTKNSALEGINLEKSPTLKSHK
KSDKKFYKQLAKNNIAEGVSMPVVNFNKALSFGPYFERTKSKKTQYMDGGLMMHIRF

Sequences:

>Translated_137_residues
MRIVKNLFLVSFVAYSSAFAVDLETETKSEKKSDKKFYKLHKNHGLETEAKNDKKLYDFTKNSALEGINLEKSPTLKSHK
KSDKKFYKQLAKNNIAEGVSMPVVNFNKALSFGPYFERTKSKKTQYMDGGLMMHIRF
>Mature_137_residues
MRIVKNLFLVSFVAYSSAFAVDLETETKSEKKSDKKFYKLHKNHGLETEAKNDKKLYDFTKNSALEGINLEKSPTLKSHK
KSDKKFYKQLAKNNIAEGVSMPVVNFNKALSFGPYFERTKSKKTQYMDGGLMMHIRF

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 15813; Mature: 15813

Theoretical pI: Translated: 10.41; Mature: 10.41

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRIVKNLFLVSFVAYSSAFAVDLETETKSEKKSDKKFYKLHKNHGLETEAKNDKKLYDFT
CHHHHHHHHHHHHHHHCEEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHH
KNSALEGINLEKSPTLKSHKKSDKKFYKQLAKNNIAEGVSMPVVNFNKALSFGPYFERTK
CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEECCCCCCCCCCHHHHHH
SKKTQYMDGGLMMHIRF
HHHHEECCCCEEEEEEC
>Mature Secondary Structure
MRIVKNLFLVSFVAYSSAFAVDLETETKSEKKSDKKFYKLHKNHGLETEAKNDKKLYDFT
CHHHHHHHHHHHHHHHCEEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHH
KNSALEGINLEKSPTLKSHKKSDKKFYKQLAKNNIAEGVSMPVVNFNKALSFGPYFERTK
CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEECCCCCCCCCCHHHHHH
SKKTQYMDGGLMMHIRF
HHHHEECCCCEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA