| Definition | Helicobacter pylori Shi470, complete genome. |
|---|---|
| Accession | NC_010698 |
| Length | 1,608,548 |
Click here to switch to the map view.
The map label for this gene is 188527514
Identifier: 188527514
GI number: 188527514
Start: 705979
End: 706431
Strand: Direct
Name: 188527514
Synonym: HPSH_03680
Alternate gene names: NA
Gene position: 705979-706431 (Clockwise)
Preceding gene: 188527512
Following gene: 188527515
Centisome position: 43.89
GC content: 42.38
Gene sequence:
>453_bases ATGCATCAAAACAATAAAACTTTTTTACCCAACCAATCCGCTCACCTCTCTAAAACCATTCTTTTTTTAAACGCTGGCTT TTTAGCCTATCTGTTAAGCGCTTGTGGGGCGAATGTGCCCATAGAAGAAGTGCTAGTTAAAGATCCTAAAGAGACTAAAG CCCAAGAAGTCGCCAGAGAAGAAAACGCCATCCAGCAAGAAAACGCCATTATTGATGCGCACACCACGCCTTTAATCAAT CGTTTCACCAATTATAGCGCTTATGGCTCTTTAAACGGCTTTTACAATTCAGTGGATAACCTCAATTCGCCCATGCAAAA CGGGATGTATGGAGGCTATTACATGCCTTATTATTACATGCCCTATGGTTTCATGCCTTATGGGTCAGGTCTTATGCCTT ATGGGCCTTATGGGTATGGAGCGCCTGGATACTTCCCTTACGCTTTTTATTGA
Upstream 100 bases:
>100_bases AAAAACAAAATTAAAATGAAATAGCCACAAAACCACCGCTTAATGAATATTAAATTAAAAACATGTTAATCTTTAGTTAT TTTTAAATTTAGGAAACCCC
Downstream 100 bases:
>100_bases TTGAGTGGCTTTAGCGAGCGTGGTCGGTGTTTTCACTCAAACGCGCTTGTATTTTCTAATAGTTATTTCTAACATGCTAG GGTGGTGTGATAGAAAAAGA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 150; Mature: 150
Protein sequence:
>150_residues MHQNNKTFLPNQSAHLSKTILFLNAGFLAYLLSACGANVPIEEVLVKDPKETKAQEVAREENAIQQENAIIDAHTTPLIN RFTNYSAYGSLNGFYNSVDNLNSPMQNGMYGGYYMPYYYMPYGFMPYGSGLMPYGPYGYGAPGYFPYAFY
Sequences:
>Translated_150_residues MHQNNKTFLPNQSAHLSKTILFLNAGFLAYLLSACGANVPIEEVLVKDPKETKAQEVAREENAIQQENAIIDAHTTPLIN RFTNYSAYGSLNGFYNSVDNLNSPMQNGMYGGYYMPYYYMPYGFMPYGSGLMPYGPYGYGAPGYFPYAFY >Mature_150_residues MHQNNKTFLPNQSAHLSKTILFLNAGFLAYLLSACGANVPIEEVLVKDPKETKAQEVAREENAIQQENAIIDAHTTPLIN RFTNYSAYGSLNGFYNSVDNLNSPMQNGMYGGYYMPYYYMPYGFMPYGSGLMPYGPYGYGAPGYFPYAFY
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 16858; Mature: 16858
Theoretical pI: Translated: 5.56; Mature: 5.56
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 4.7 %Met (Translated Protein) 5.3 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 4.7 %Met (Mature Protein) 5.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MHQNNKTFLPNQSAHLSKTILFLNAGFLAYLLSACGANVPIEEVLVKDPKETKAQEVARE CCCCCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHCCCCCCHHHHHHCCCCHHHHHHHHHH ENAIQQENAIIDAHTTPLINRFTNYSAYGSLNGFYNSVDNLNSPMQNGMYGGYYMPYYYM HHHHHHHCCEECCCCCHHHHHHCCCCCCCCCCHHHHHHHHCCCHHHCCCCCCEECCEEEC PYGFMPYGSGLMPYGPYGYGAPGYFPYAFY CCCCCCCCCCCCCCCCCCCCCCCCCCCCCC >Mature Secondary Structure MHQNNKTFLPNQSAHLSKTILFLNAGFLAYLLSACGANVPIEEVLVKDPKETKAQEVARE CCCCCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHCCCCCCHHHHHHCCCCHHHHHHHHHH ENAIQQENAIIDAHTTPLINRFTNYSAYGSLNGFYNSVDNLNSPMQNGMYGGYYMPYYYM HHHHHHHCCEECCCCCHHHHHHCCCCCCCCCCHHHHHHHHCCCHHHCCCCCCEECCEEEC PYGFMPYGSGLMPYGPYGYGAPGYFPYAFY CCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA