Definition Helicobacter pylori Shi470, complete genome.
Accession NC_010698
Length 1,608,548

Click here to switch to the map view.

The map label for this gene is 188527460

Identifier: 188527460

GI number: 188527460

Start: 647961

End: 648104

Strand: Direct

Name: 188527460

Synonym: HPSH_03390

Alternate gene names: NA

Gene position: 647961-648104 (Clockwise)

Preceding gene: 188527448

Following gene: 188527468

Centisome position: 40.28

GC content: 39.58

Gene sequence:

>144_bases
GTGACCAAGACAAAGGAGTCCGGCAAACATTTAGACGCTAAAAACACGCACGCTGAAGTCAAATGCCTTAATAAAAACAT
CAACACCCCTCTTATAAGCTATAAGCACACTTCAAATTCAGCTTCTGTTTTTTCTCTCACTTGA

Upstream 100 bases:

>100_bases
TAAAAGCGTCCAAGCGCCATTCCCCCAACTAGAAATGACAGAAAAAGCGTCTTGCCCTGTCAAACCATAAACAAGAATAA
ACACGATAAACGATAAAAGA

Downstream 100 bases:

>100_bases
TCAAGGCTGACACCCTCTTGCAATTCCACTAATTTCATGGCGTTATTGGAAAACTCAAACACCGCTAAATCCGTTATCAA
TTGATGCACCACGCCTTTTC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 47; Mature: 46

Protein sequence:

>47_residues
MTKTKESGKHLDAKNTHAEVKCLNKNINTPLISYKHTSNSASVFSLT

Sequences:

>Translated_47_residues
MTKTKESGKHLDAKNTHAEVKCLNKNINTPLISYKHTSNSASVFSLT
>Mature_46_residues
TKTKESGKHLDAKNTHAEVKCLNKNINTPLISYKHTSNSASVFSLT

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 5189; Mature: 5058

Theoretical pI: Translated: 10.23; Mature: 10.23

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTKTKESGKHLDAKNTHAEVKCLNKNINTPLISYKHTSNSASVFSLT
CCCCCCCCCCCCCCCCCEEEEEECCCCCCCEEEEEECCCCCEEEEEC
>Mature Secondary Structure 
TKTKESGKHLDAKNTHAEVKCLNKNINTPLISYKHTSNSASVFSLT
CCCCCCCCCCCCCCCCEEEEEECCCCCCCEEEEEECCCCCEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA