Definition Helicobacter pylori Shi470, complete genome.
Accession NC_010698
Length 1,608,548

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The map label for this gene is 188527427

Identifier: 188527427

GI number: 188527427

Start: 608700

End: 609767

Strand: Direct

Name: 188527427

Synonym: HPSH_03215

Alternate gene names: NA

Gene position: 608700-609767 (Clockwise)

Preceding gene: 188527426

Following gene: 188527428

Centisome position: 37.84

GC content: 34.64

Gene sequence:

>1068_bases
ATGAACCACCTTTTAATCCTCTACAATCCTTACTACCAGCGAGATGTCATACAACAACATTTAAGCGTTTTGCAGGAAAA
ATCCCAAGTGGGTTTTGGTAAAATCCGATCAAAGCTCAACGATCAAGAAAAGCACCACTCTTTAGAAGAGATTTATAAAG
CCACTAATGAAAAAAATTTTTTGCAGCTTTTTTTGACCGATTACGCTAATTTATTTGTCGCTAAGGTGGTAAAGGTTTCT
AAAGATATTGATGAGAGTTTGATCCCTAGTTATTATAAAGAAAAAAATTTGGAAGTGGAAGACTTTTTTATTATCAGCGA
TTTAAGGGAATTAGTCAGGGAAGACTTTAGCCTTTTAAGGGATCAATTTTTAGCCAATTTCATCGCACCCAACAACCACA
CTTACGCCATTTATGGGAATAATTATGTCTATCCTTTGACGGTGAGGTTGAAAGAAGAGCGTTCTTATTTTTTAAGCGAT
GGAAAACATTGTTTGAGCGTGTATAAAAGCAAAGAATATTTGATCATGCAAGAAAATTTCATGCGTTTTGTTTTTGGCAA
AAGGCTTTTTTACCTCTTACACCCTGACAGCATCAATAACATCATCCATGCAGAATTAGAGCTTTTGCAAAGCGAAAACG
ATCTCTTGAATGATTTTACAAGCATCATCGTCAAATACTCCAAAACCTTAGAATACGAAATTTATCTTTTTGCTAAAAAA
GTCCTTTTAAAGGCTTGCGCAAAAGATTCTAGCCTTTATGATTTAGATTATAAAGTCCAAGGAAAATCTTTGATACTTGA
AGATTTTTTCACTCAAAAGCCTAATCTTGGGAGCGTTAAATACTTGCTGATGCACAAAAGGGTTCAGTGCCATTTGGAAG
AGAGTTTGAACAGATTTATTAATTTTTCTTTTCAAAAAAGTTTCAAGTTTTTTCAAGATATTCGCAATGAAGCCGTCCAT
GAAAAAGCCCCGAGTTTGCATGAAGTAGAAAAGCTCAGGAATGAAATTTTAGGCATAGAAGGTATGAGCTTGTTGAAAAG
CATTCTGACTCGCAAGGAAGTTTCATGA

Upstream 100 bases:

>100_bases
ACGAATTGTTTGAAATTTTAAAAGAACTCATCCAGGAATACGAGAAAAATCCTGACGAGGTCAAGCAGAATCTCACAGAG
ATTTTGAAATAAGGCAAGGC

Downstream 100 bases:

>100_bases
AAGAATGCGATGAATTAAATCTATGCTTAATGCCGATTTGATAGCGCGAGATTTTAAAACTTATTTAGAGCCTTTAAGAG
AGAAGAAAAATTTATTGGGT

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 355; Mature: 355

Protein sequence:

>355_residues
MNHLLILYNPYYQRDVIQQHLSVLQEKSQVGFGKIRSKLNDQEKHHSLEEIYKATNEKNFLQLFLTDYANLFVAKVVKVS
KDIDESLIPSYYKEKNLEVEDFFIISDLRELVREDFSLLRDQFLANFIAPNNHTYAIYGNNYVYPLTVRLKEERSYFLSD
GKHCLSVYKSKEYLIMQENFMRFVFGKRLFYLLHPDSINNIIHAELELLQSENDLLNDFTSIIVKYSKTLEYEIYLFAKK
VLLKACAKDSSLYDLDYKVQGKSLILEDFFTQKPNLGSVKYLLMHKRVQCHLEESLNRFINFSFQKSFKFFQDIRNEAVH
EKAPSLHEVEKLRNEILGIEGMSLLKSILTRKEVS

Sequences:

>Translated_355_residues
MNHLLILYNPYYQRDVIQQHLSVLQEKSQVGFGKIRSKLNDQEKHHSLEEIYKATNEKNFLQLFLTDYANLFVAKVVKVS
KDIDESLIPSYYKEKNLEVEDFFIISDLRELVREDFSLLRDQFLANFIAPNNHTYAIYGNNYVYPLTVRLKEERSYFLSD
GKHCLSVYKSKEYLIMQENFMRFVFGKRLFYLLHPDSINNIIHAELELLQSENDLLNDFTSIIVKYSKTLEYEIYLFAKK
VLLKACAKDSSLYDLDYKVQGKSLILEDFFTQKPNLGSVKYLLMHKRVQCHLEESLNRFINFSFQKSFKFFQDIRNEAVH
EKAPSLHEVEKLRNEILGIEGMSLLKSILTRKEVS
>Mature_355_residues
MNHLLILYNPYYQRDVIQQHLSVLQEKSQVGFGKIRSKLNDQEKHHSLEEIYKATNEKNFLQLFLTDYANLFVAKVVKVS
KDIDESLIPSYYKEKNLEVEDFFIISDLRELVREDFSLLRDQFLANFIAPNNHTYAIYGNNYVYPLTVRLKEERSYFLSD
GKHCLSVYKSKEYLIMQENFMRFVFGKRLFYLLHPDSINNIIHAELELLQSENDLLNDFTSIIVKYSKTLEYEIYLFAKK
VLLKACAKDSSLYDLDYKVQGKSLILEDFFTQKPNLGSVKYLLMHKRVQCHLEESLNRFINFSFQKSFKFFQDIRNEAVH
EKAPSLHEVEKLRNEILGIEGMSLLKSILTRKEVS

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 42018; Mature: 42018

Theoretical pI: Translated: 7.41; Mature: 7.41

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNHLLILYNPYYQRDVIQQHLSVLQEKSQVGFGKIRSKLNDQEKHHSLEEIYKATNEKNF
CCCEEEEECCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCHHHHHHHHHHHHHHCCCCHH
LQLFLTDYANLFVAKVVKVSKDIDESLIPSYYKEKNLEVEDFFIISDLRELVREDFSLLR
HHHHHHHHHHHHHHHHHHHHHHCCHHHCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
DQFLANFIAPNNHTYAIYGNNYVYPLTVRLKEERSYFLSDGKHCLSVYKSKEYLIMQENF
HHHHHHHCCCCCCEEEEEECCEEEEEEEEEECHHHHHHHCCHHHHHHHCCCCEEEEHHHH
MRFVFGKRLFYLLHPDSINNIIHAELELLQSENDLLNDFTSIIVKYSKTLEYEIYLFAKK
HHHHHHHHEEEEECCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VLLKACAKDSSLYDLDYKVQGKSLILEDFFTQKPNLGSVKYLLMHKRVQCHLEESLNRFI
HHHHHHCCCCCEEEEEEEECCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
NFSFQKSFKFFQDIRNEAVHEKAPSLHEVEKLRNEILGIEGMSLLKSILTRKEVS
CHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHCCCC
>Mature Secondary Structure
MNHLLILYNPYYQRDVIQQHLSVLQEKSQVGFGKIRSKLNDQEKHHSLEEIYKATNEKNF
CCCEEEEECCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCHHHHHHHHHHHHHHCCCCHH
LQLFLTDYANLFVAKVVKVSKDIDESLIPSYYKEKNLEVEDFFIISDLRELVREDFSLLR
HHHHHHHHHHHHHHHHHHHHHHCCHHHCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
DQFLANFIAPNNHTYAIYGNNYVYPLTVRLKEERSYFLSDGKHCLSVYKSKEYLIMQENF
HHHHHHHCCCCCCEEEEEECCEEEEEEEEEECHHHHHHHCCHHHHHHHCCCCEEEEHHHH
MRFVFGKRLFYLLHPDSINNIIHAELELLQSENDLLNDFTSIIVKYSKTLEYEIYLFAKK
HHHHHHHHEEEEECCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VLLKACAKDSSLYDLDYKVQGKSLILEDFFTQKPNLGSVKYLLMHKRVQCHLEESLNRFI
HHHHHHCCCCCEEEEEEEECCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
NFSFQKSFKFFQDIRNEAVHEKAPSLHEVEKLRNEILGIEGMSLLKSILTRKEVS
CHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA