Definition Helicobacter pylori Shi470, complete genome.
Accession NC_010698
Length 1,608,548

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The map label for this gene is 188527252

Identifier: 188527252

GI number: 188527252

Start: 441472

End: 442959

Strand: Reverse

Name: 188527252

Synonym: HPSH_02295

Alternate gene names: NA

Gene position: 442959-441472 (Counterclockwise)

Preceding gene: 188527253

Following gene: 188527251

Centisome position: 27.54

GC content: 36.83

Gene sequence:

>1488_bases
ATGAGCGTTTTGAAATTGCATGTAAAAGTCTTTCGTTTTGAAACCAACAAAGATTACAACCCTGCTTATGAGTCTTATTT
TTTAGAATACCAAGAAGATCAGTACCTTTTGGATCTTTTAAAACAACTCAAAGGCGTGAGCTATAATGAAAATATCGCGC
TTAAAATCAACCAAATTGCGGTGTTTGAAGACGCTAAAGTGAGCGATTTGGTGGCGTTTTTTTCTAAAGAATGGGTGCTA
GATCCCCTATCCAAACGATACGCTTTAAAAGATTTGGTGATTGATGAAAAGGCGGTTTTAAAAAACTATGAAGATTTTTT
CAAACAAGTCCCCTACATCACTAAAGGCGAAAAAGAAGAATTAGAAAAGTTTATCCAAATCAATTTTATCAACCCCCAAA
CAAACCCTAAATATCTGGGCGATGGCTTTTTCTTGTATGTTAAATGGTTGATGAAGCGCTACCCCACAGAGCGCAACCGG
TTATTAGAGATGATTTCTCAGCCTGAAAGCGGCGTGATGAATTTTTTAAGCGTGGCGCATTATCTCTATAAAAACGATGA
CAACATTGACCATGAAATCTATGAATTGCAAGAAATCCTAACCAATTCCAAAATCAAGCCATGGAAAGATTTTTCTAAAA
ACCTTTTAAGCCTTTTTCAATACAATTCTAACCCCCCTAAAACGCCTAACCCCCCTAAAACTTGCGCGCTCTTTAACGCT
TATGCGAAGCATTTAAACGCGCAATCGCTTCTAAAAAGCGCTAAGCTCTATTTAGAAAAAATGGGGCAAAAAACCATTGA
TCTGCCTTTTTGTTATGATGGAGGCTATTATGGGAAGATTATAAGCACGCATGATTTCCTCACCGCTTGTGCGTATAATC
TGGCTCTAGCCAAAGCCAATGGCGTTTCGCTCATTTTTTGCGAAGAAGATGCGTATTTGAATATCTTGCATGCTAAAGAA
ATTTTAGACAACAACCCTGAAATTATCGACTCCATTAATGAAAAATTGAAAAAATACCAGCTTGTTTATGAAAAAGGCGT
TGAGATAGTCTATCTTAATGAGTGGGTTAATGAGTTTTTGGCATGGGAATTGAAAAGCCCTTTTGATGCGTTTTTAGGGG
CTGAATTTTCTCGCATCAAACAAAGCGATCATTTTTTCAATAAAATCCATTTAAAAGCCCCCCATTTTTTAGAGTCCTTT
CAAAATTACGCCCCCCTTTTAGAAGTCAATGAAATAAGTGGCTTACTCCAGTGTGCGCATTTACGCTATTTAGGGATTGA
TTTGGGGGCGGATTTTTTAATCGTGCATTCTTTAGGGCTTTTTCACGCTTTTGAAAATTTAAGCTTAAAAGCTTCAAAGA
TTTATAAAAGAGATAATGACAACACCCCCACTTTATTTTTACCTCAAATCGCGCTAATAGCTATGGGGGAAAAAAACATG
CAAGCTTTAGGGCTTGATGTGCATTATCATAAGGTTACTTTCATTTAA

Upstream 100 bases:

>100_bases
GGGAGTTTAAAGAATGGTTGGATTCTAAAGAGGCCCTTTTTTCCAATTCCAAAAACCGTGCGATTTTAGAAAATCTGCAC
AAAAGCTAAAGGACTGATTG

Downstream 100 bases:

>100_bases
GATGAACGCTTTTTTAAAACTTGCGCTCGCTTCTTTGATGGGGGGGCTTTGGTATGCTTTCAATGGCGAAGGTTCTGAGA
TTGTCGCTATAGGGATTTTT

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 495; Mature: 494

Protein sequence:

>495_residues
MSVLKLHVKVFRFETNKDYNPAYESYFLEYQEDQYLLDLLKQLKGVSYNENIALKINQIAVFEDAKVSDLVAFFSKEWVL
DPLSKRYALKDLVIDEKAVLKNYEDFFKQVPYITKGEKEELEKFIQINFINPQTNPKYLGDGFFLYVKWLMKRYPTERNR
LLEMISQPESGVMNFLSVAHYLYKNDDNIDHEIYELQEILTNSKIKPWKDFSKNLLSLFQYNSNPPKTPNPPKTCALFNA
YAKHLNAQSLLKSAKLYLEKMGQKTIDLPFCYDGGYYGKIISTHDFLTACAYNLALAKANGVSLIFCEEDAYLNILHAKE
ILDNNPEIIDSINEKLKKYQLVYEKGVEIVYLNEWVNEFLAWELKSPFDAFLGAEFSRIKQSDHFFNKIHLKAPHFLESF
QNYAPLLEVNEISGLLQCAHLRYLGIDLGADFLIVHSLGLFHAFENLSLKASKIYKRDNDNTPTLFLPQIALIAMGEKNM
QALGLDVHYHKVTFI

Sequences:

>Translated_495_residues
MSVLKLHVKVFRFETNKDYNPAYESYFLEYQEDQYLLDLLKQLKGVSYNENIALKINQIAVFEDAKVSDLVAFFSKEWVL
DPLSKRYALKDLVIDEKAVLKNYEDFFKQVPYITKGEKEELEKFIQINFINPQTNPKYLGDGFFLYVKWLMKRYPTERNR
LLEMISQPESGVMNFLSVAHYLYKNDDNIDHEIYELQEILTNSKIKPWKDFSKNLLSLFQYNSNPPKTPNPPKTCALFNA
YAKHLNAQSLLKSAKLYLEKMGQKTIDLPFCYDGGYYGKIISTHDFLTACAYNLALAKANGVSLIFCEEDAYLNILHAKE
ILDNNPEIIDSINEKLKKYQLVYEKGVEIVYLNEWVNEFLAWELKSPFDAFLGAEFSRIKQSDHFFNKIHLKAPHFLESF
QNYAPLLEVNEISGLLQCAHLRYLGIDLGADFLIVHSLGLFHAFENLSLKASKIYKRDNDNTPTLFLPQIALIAMGEKNM
QALGLDVHYHKVTFI
>Mature_494_residues
SVLKLHVKVFRFETNKDYNPAYESYFLEYQEDQYLLDLLKQLKGVSYNENIALKINQIAVFEDAKVSDLVAFFSKEWVLD
PLSKRYALKDLVIDEKAVLKNYEDFFKQVPYITKGEKEELEKFIQINFINPQTNPKYLGDGFFLYVKWLMKRYPTERNRL
LEMISQPESGVMNFLSVAHYLYKNDDNIDHEIYELQEILTNSKIKPWKDFSKNLLSLFQYNSNPPKTPNPPKTCALFNAY
AKHLNAQSLLKSAKLYLEKMGQKTIDLPFCYDGGYYGKIISTHDFLTACAYNLALAKANGVSLIFCEEDAYLNILHAKEI
LDNNPEIIDSINEKLKKYQLVYEKGVEIVYLNEWVNEFLAWELKSPFDAFLGAEFSRIKQSDHFFNKIHLKAPHFLESFQ
NYAPLLEVNEISGLLQCAHLRYLGIDLGADFLIVHSLGLFHAFENLSLKASKIYKRDNDNTPTLFLPQIALIAMGEKNMQ
ALGLDVHYHKVTFI

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 57543; Mature: 57412

Theoretical pI: Translated: 6.40; Mature: 6.40

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSVLKLHVKVFRFETNKDYNPAYESYFLEYQEDQYLLDLLKQLKGVSYNENIALKINQIA
CCCEEEEEEEEEEECCCCCCCHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCEEEEEEEEE
VFEDAKVSDLVAFFSKEWVLDPLSKRYALKDLVIDEKAVLKNYEDFFKQVPYITKGEKEE
EECCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCHHH
LEKFIQINFINPQTNPKYLGDGFFLYVKWLMKRYPTERNRLLEMISQPESGVMNFLSVAH
HHHHHEEEEECCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHHH
YLYKNDDNIDHEIYELQEILTNSKIKPWKDFSKNLLSLFQYNSNPPKTPNPPKTCALFNA
HHHCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHH
YAKHLNAQSLLKSAKLYLEKMGQKTIDLPFCYDGGYYGKIISTHDFLTACAYNLALAKAN
HHHHCCHHHHHHHHHHHHHHHCCCEECCEEEECCCCEEEEECHHHHHHHHHHHHHEEECC
GVSLIFCEEDAYLNILHAKEILDNNPEIIDSINEKLKKYQLVYEKGVEIVYLNEWVNEFL
CEEEEEECCCCEEEHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHH
AWELKSPFDAFLGAEFSRIKQSDHFFNKIHLKAPHFLESFQNYAPLLEVNEISGLLQCAH
HHHCCCHHHHHHCCHHHHHHHHHHHHHEEEECCCHHHHHHHHCCCCEEHHHHHHHHHHHH
LRYLGIDLGADFLIVHSLGLFHAFENLSLKASKIYKRDNDNTPTLFLPQIALIAMGEKNM
HHHEEECCCCHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCEEECCCEEEEEECCCCC
QALGLDVHYHKVTFI
EEEEEEEEEEEEEEC
>Mature Secondary Structure 
SVLKLHVKVFRFETNKDYNPAYESYFLEYQEDQYLLDLLKQLKGVSYNENIALKINQIA
CCEEEEEEEEEEECCCCCCCHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCEEEEEEEEE
VFEDAKVSDLVAFFSKEWVLDPLSKRYALKDLVIDEKAVLKNYEDFFKQVPYITKGEKEE
EECCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCHHH
LEKFIQINFINPQTNPKYLGDGFFLYVKWLMKRYPTERNRLLEMISQPESGVMNFLSVAH
HHHHHEEEEECCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHHH
YLYKNDDNIDHEIYELQEILTNSKIKPWKDFSKNLLSLFQYNSNPPKTPNPPKTCALFNA
HHHCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHH
YAKHLNAQSLLKSAKLYLEKMGQKTIDLPFCYDGGYYGKIISTHDFLTACAYNLALAKAN
HHHHCCHHHHHHHHHHHHHHHCCCEECCEEEECCCCEEEEECHHHHHHHHHHHHHEEECC
GVSLIFCEEDAYLNILHAKEILDNNPEIIDSINEKLKKYQLVYEKGVEIVYLNEWVNEFL
CEEEEEECCCCEEEHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHH
AWELKSPFDAFLGAEFSRIKQSDHFFNKIHLKAPHFLESFQNYAPLLEVNEISGLLQCAH
HHHCCCHHHHHHCCHHHHHHHHHHHHHEEEECCCHHHHHHHHCCCCEEHHHHHHHHHHHH
LRYLGIDLGADFLIVHSLGLFHAFENLSLKASKIYKRDNDNTPTLFLPQIALIAMGEKNM
HHHEEECCCCHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCEEECCCEEEEEECCCCC
QALGLDVHYHKVTFI
EEEEEEEEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA