Click here to switch to the map view.

The map label for this gene is ybgF [H]

Identifier: 188527238

GI number: 188527238

Start: 422995

End: 424437

Strand: Reverse

Name: ybgF [H]

Synonym: HPSH_02225

Alternate gene names: 188527238

Gene position: 424437-422995 (Counterclockwise)

Preceding gene: 188527239

Following gene: 188527237

Centisome position: 26.39

GC content: 41.86

Gene sequence:

>1443_bases
ATGGACAATCAAGAGATAACGCATCAAAATATCGCGCAAAAACAAGGCGAGCTTAAAAGAGACATGAAAATGCGCCATCT
CTTAATGATTGCCTTTGGGGGAGCGATTGGCACAGGGCTTTTTGTAGGCACTGGGGGTAATATTGCGAACGCTGGCCCTT
TAGGGACTTTGATCGCTTATTGTTTTGGAGGGCTAGTGGTTTATTGCATCATGCTCTCTTTAGGCGAATTGGCTAGCGTT
TATCCCACTACGGGTAGTTTTGGGGATTATGCGGCTAAATTCATAGGCCCTGGCACGGGCTATATGGTTTTTTGGATGTA
TTGGCTTGGTTGGGTGATCACGGTGGCGTTAGAATATATCGCTATAGGCATGCTCATGCAACGCTGGTTTGCAAGTATTC
CTATCCATTATTGGGTGATCTTGTGCATTGCGTTAGTTTTTTTATTGAATTTTTTTTCGGTTAAAATTTTTGCCGAGGGC
GAGTTTTTCTTCAGCCTGATTAAAGTTTTAGCGGTGATCGCTTTTATAGGCATTGGCACGATTGGGATTATTTATCAAAT
CTATTTGCATGGGTTTAGTTCTATTTTTGATAACTTCCATTTTGGCGATAAGGGGTTTTTCCCTAACGGGAGCGCAGCGG
TTTTTAGCGCGATGCTTGCGGTGATTTTCGCATTCACTGGCACAGAGGTGATCGGGGTGGCTGTGGGAGAAACTAAAAAC
GCTAGCGAAGTGATGCCTAAAGCGATTAAAGCGACTTTGTGGCGGATTGTCTTTTTCTTTTTAGGCTCTGTGTTTGTCAT
TTCTGTTTTTTTACCCATGAGCGATTCTTCTATCACGCAAAGCCCTTTTGTGAGCGTTTTAGAACGCATCAATTTGCCTT
TTATTGGCATGGGTATCCCTTATGTGGCTGATATAATGAACGCTGTTATCATTACGGCGATGTTTTCTACCGCTAATTCA
GGGCTTTATGGAGCGAGCCGCATGATTTATGGGCTGTCCAAACAAAAGATGTTTTTTAAGGTTTTTTCCAAACTCAACCG
ACAAGGCACGCCCACTTATGCGATGTTTTTTTCCCTTTCTTTTTCTCTCATAGGGCTTTTAGTCCAAATTTATGCCAAAG
AAAATGTCGTGGAAGCTTTGATCAATGTGATCAGTTTCACGGTGATTATTGTGTGGGTTAGCGTGTCTGTTTCGCAATAT
TCTTTCCGCAAGCAATACTTAAAAGCCGGGCATTCTTTAGAGGATTTGCCTTATAAAGCCCCCTTCCTACCCTTTTTGCA
ACTCATAGGGATCACTGGGTGTGTCATCGGCGTGATTGGTTCGGCTATGGATAAGGACCAACGCATTGGAATGATTTTAA
CGATTGTTTTTGCCATTGTGTGTTACATTGGATACTATTTTACACAAAAAGCTAATGAAAATAACAAAAAAGATTTGATA
TAA

Upstream 100 bases:

>100_bases
TTTTTAAATTTTATTTTCAATATTCAATTAAAAAAAATCATTTTATTTTATTTTTGTTATAATTCAAGCTATTTTTATTT
TTAATCTAAGGAGGTGTCGC

Downstream 100 bases:

>100_bases
TCTTTTCTTAATTTTGAAGTTTAGCAAATTTTAAGGAAGTAACCATGATGAAAAAAACCCTTTTTATCTCTTTGGCTTTA
GCGTTAAGCTTGAATGCGGG

Product: amino acid permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 480; Mature: 480

Protein sequence:

>480_residues
MDNQEITHQNIAQKQGELKRDMKMRHLLMIAFGGAIGTGLFVGTGGNIANAGPLGTLIAYCFGGLVVYCIMLSLGELASV
YPTTGSFGDYAAKFIGPGTGYMVFWMYWLGWVITVALEYIAIGMLMQRWFASIPIHYWVILCIALVFLLNFFSVKIFAEG
EFFFSLIKVLAVIAFIGIGTIGIIYQIYLHGFSSIFDNFHFGDKGFFPNGSAAVFSAMLAVIFAFTGTEVIGVAVGETKN
ASEVMPKAIKATLWRIVFFFLGSVFVISVFLPMSDSSITQSPFVSVLERINLPFIGMGIPYVADIMNAVIITAMFSTANS
GLYGASRMIYGLSKQKMFFKVFSKLNRQGTPTYAMFFSLSFSLIGLLVQIYAKENVVEALINVISFTVIIVWVSVSVSQY
SFRKQYLKAGHSLEDLPYKAPFLPFLQLIGITGCVIGVIGSAMDKDQRIGMILTIVFAIVCYIGYYFTQKANENNKKDLI

Sequences:

>Translated_480_residues
MDNQEITHQNIAQKQGELKRDMKMRHLLMIAFGGAIGTGLFVGTGGNIANAGPLGTLIAYCFGGLVVYCIMLSLGELASV
YPTTGSFGDYAAKFIGPGTGYMVFWMYWLGWVITVALEYIAIGMLMQRWFASIPIHYWVILCIALVFLLNFFSVKIFAEG
EFFFSLIKVLAVIAFIGIGTIGIIYQIYLHGFSSIFDNFHFGDKGFFPNGSAAVFSAMLAVIFAFTGTEVIGVAVGETKN
ASEVMPKAIKATLWRIVFFFLGSVFVISVFLPMSDSSITQSPFVSVLERINLPFIGMGIPYVADIMNAVIITAMFSTANS
GLYGASRMIYGLSKQKMFFKVFSKLNRQGTPTYAMFFSLSFSLIGLLVQIYAKENVVEALINVISFTVIIVWVSVSVSQY
SFRKQYLKAGHSLEDLPYKAPFLPFLQLIGITGCVIGVIGSAMDKDQRIGMILTIVFAIVCYIGYYFTQKANENNKKDLI
>Mature_480_residues
MDNQEITHQNIAQKQGELKRDMKMRHLLMIAFGGAIGTGLFVGTGGNIANAGPLGTLIAYCFGGLVVYCIMLSLGELASV
YPTTGSFGDYAAKFIGPGTGYMVFWMYWLGWVITVALEYIAIGMLMQRWFASIPIHYWVILCIALVFLLNFFSVKIFAEG
EFFFSLIKVLAVIAFIGIGTIGIIYQIYLHGFSSIFDNFHFGDKGFFPNGSAAVFSAMLAVIFAFTGTEVIGVAVGETKN
ASEVMPKAIKATLWRIVFFFLGSVFVISVFLPMSDSSITQSPFVSVLERINLPFIGMGIPYVADIMNAVIITAMFSTANS
GLYGASRMIYGLSKQKMFFKVFSKLNRQGTPTYAMFFSLSFSLIGLLVQIYAKENVVEALINVISFTVIIVWVSVSVSQY
SFRKQYLKAGHSLEDLPYKAPFLPFLQLIGITGCVIGVIGSAMDKDQRIGMILTIVFAIVCYIGYYFTQKANENNKKDLI

Specific function: Transporter For The Intake Of S-Methylmethionine. [C]

COG id: COG0833

COG function: function code E; Amino acid transporters

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the amino acid-polyamine-organocation (APC) superfamily [H]

Homologues:

Organism=Escherichia coli, GI87081708, Length=466, Percent_Identity=40.7725321888412, Blast_Score=389, Evalue=1e-109,
Organism=Escherichia coli, GI1788480, Length=425, Percent_Identity=37.1764705882353, Blast_Score=303, Evalue=1e-83,
Organism=Escherichia coli, GI1790653, Length=483, Percent_Identity=30.4347826086957, Blast_Score=239, Evalue=2e-64,
Organism=Escherichia coli, GI87081915, Length=430, Percent_Identity=33.953488372093, Blast_Score=238, Evalue=5e-64,
Organism=Escherichia coli, GI1789017, Length=419, Percent_Identity=35.3221957040573, Blast_Score=236, Evalue=3e-63,
Organism=Escherichia coli, GI1786789, Length=473, Percent_Identity=30.0211416490486, Blast_Score=229, Evalue=3e-61,
Organism=Escherichia coli, GI48994972, Length=451, Percent_Identity=33.4811529933481, Blast_Score=228, Evalue=6e-61,
Organism=Escherichia coli, GI1786302, Length=469, Percent_Identity=31.3432835820896, Blast_Score=222, Evalue=4e-59,
Organism=Escherichia coli, GI1786602, Length=477, Percent_Identity=32.2851153039832, Blast_Score=217, Evalue=1e-57,
Organism=Escherichia coli, GI87082250, Length=350, Percent_Identity=25.7142857142857, Blast_Score=69, Evalue=6e-13,
Organism=Escherichia coli, GI87081869, Length=347, Percent_Identity=23.9193083573487, Blast_Score=62, Evalue=6e-11,
Organism=Caenorhabditis elegans, GI17533459, Length=482, Percent_Identity=21.1618257261411, Blast_Score=68, Evalue=8e-12,
Organism=Saccharomyces cerevisiae, GI6320772, Length=444, Percent_Identity=33.7837837837838, Blast_Score=251, Evalue=2e-67,
Organism=Saccharomyces cerevisiae, GI6324061, Length=431, Percent_Identity=32.4825986078886, Blast_Score=236, Evalue=6e-63,
Organism=Saccharomyces cerevisiae, GI6324059, Length=444, Percent_Identity=31.981981981982, Blast_Score=216, Evalue=7e-57,
Organism=Saccharomyces cerevisiae, GI6324553, Length=408, Percent_Identity=33.0882352941176, Blast_Score=212, Evalue=1e-55,
Organism=Saccharomyces cerevisiae, GI6319824, Length=426, Percent_Identity=31.4553990610329, Blast_Score=207, Evalue=3e-54,
Organism=Saccharomyces cerevisiae, GI6320717, Length=434, Percent_Identity=29.7235023041475, Blast_Score=206, Evalue=8e-54,
Organism=Saccharomyces cerevisiae, GI6322892, Length=437, Percent_Identity=30.4347826086957, Blast_Score=205, Evalue=1e-53,
Organism=Saccharomyces cerevisiae, GI6321629, Length=495, Percent_Identity=27.2727272727273, Blast_Score=200, Evalue=5e-52,
Organism=Saccharomyces cerevisiae, GI6322967, Length=462, Percent_Identity=30.3030303030303, Blast_Score=196, Evalue=9e-51,
Organism=Saccharomyces cerevisiae, GI6319543, Length=419, Percent_Identity=28.6396181384248, Blast_Score=189, Evalue=1e-48,
Organism=Saccharomyces cerevisiae, GI6324990, Length=428, Percent_Identity=29.6728971962617, Blast_Score=183, Evalue=5e-47,
Organism=Saccharomyces cerevisiae, GI6319608, Length=448, Percent_Identity=28.3482142857143, Blast_Score=181, Evalue=2e-46,
Organism=Saccharomyces cerevisiae, GI6324981, Length=505, Percent_Identity=29.3069306930693, Blast_Score=177, Evalue=3e-45,
Organism=Saccharomyces cerevisiae, GI6319542, Length=444, Percent_Identity=29.7297297297297, Blast_Score=174, Evalue=3e-44,
Organism=Saccharomyces cerevisiae, GI6320251, Length=435, Percent_Identity=26.6666666666667, Blast_Score=170, Evalue=4e-43,
Organism=Saccharomyces cerevisiae, GI6324924, Length=448, Percent_Identity=26.5625, Blast_Score=168, Evalue=2e-42,
Organism=Saccharomyces cerevisiae, GI6321053, Length=440, Percent_Identity=25.6818181818182, Blast_Score=168, Evalue=2e-42,
Organism=Saccharomyces cerevisiae, GI6320364, Length=511, Percent_Identity=23.4833659491194, Blast_Score=130, Evalue=4e-31,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004841
- InterPro:   IPR002293
- InterPro:   IPR004840 [H]

Pfam domain/function: PF00324 AA_permease [H]

EC number: NA

Molecular weight: Translated: 52959; Mature: 52959

Theoretical pI: Translated: 8.94; Mature: 8.94

Prosite motif: PS00218 AMINO_ACID_PERMEASE_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
4.2 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
4.2 %Met     (Mature Protein)
5.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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>Mature Secondary Structure
MDNQEITHQNIAQKQGELKRDMKMRHLLMIAFGGAIGTGLFVGTGGNIANAGPLGTLIAY
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCCCCCCHHHHHHHH
CFGGLVVYCIMLSLGELASVYPTTGSFGDYAAKFIGPGTGYMVFWMYWLGWVITVALEYI
HHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH
AIGMLMQRWFASIPIHYWVILCIALVFLLNFFSVKIFAEGEFFFSLIKVLAVIAFIGIGT
HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHEEEEECCHHHHHHHHHHHHHHHHHHHH
IGIIYQIYLHGFSSIFDNFHFGDKGFFPNGSAAVFSAMLAVIFAFTGTEVIGVAVGETKN
HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCCC
ASEVMPKAIKATLWRIVFFFLGSVFVISVFLPMSDSSITQSPFVSVLERINLPFIGMGIP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCEEECCHH
YVADIMNAVIITAMFSTANSGLYGASRMIYGLSKQKMFFKVFSKLNRQGTPTYAMFFSLS
HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
FSLIGLLVQIYAKENVVEALINVISFTVIIVWVSVSVSQYSFRKQYLKAGHSLEDLPYKA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
PFLPFLQLIGITGCVIGVIGSAMDKDQRIGMILTIVFAIVCYIGYYFTQKANENNKKDLI
CHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]