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The map label for this gene is ycaJ [C]

Identifier: 188527230

GI number: 188527230

Start: 414389

End: 415564

Strand: Reverse

Name: ycaJ [C]

Synonym: HPSH_02185

Alternate gene names: 188527230

Gene position: 415564-414389 (Counterclockwise)

Preceding gene: 188527231

Following gene: 188527229

Centisome position: 25.83

GC content: 40.65

Gene sequence:

>1176_bases
ATGAGCCTGACTTCGCTTTTAAACCCAAAAAGCCTAGAAGATTTTTTAGGCCAAGAGCATCTAATAGGGAAAGACGCCCC
CTTATTTAAAGCCTTACAATCCAAACACTTCCCCCACGCCTTTTTCTATGGCCCTCCTGGCGTGGGTAAAACAAGTCTGG
CTCAAATCATCGCCCGCATGCTAGAGCGCCCCATTCTTTTATTTAATGCGACGGATTTTAAATTAGAGGATTTACGCCTT
AAACTTAAAAATTACCAAAACACCCTTTTAAAACCGGTTATTTTTATTGATGAAACCCACAGATTGAATAAAACCCAACA
AGAATTTTTACTCCCCATTATGGAAAAAGATCACGCTTTAATCTTAGGGGCTAGCACGCAAGATCCTAATTACAGCCTAA
GCCATGCGATTCGCTCAAGAAGTTTTATTTTTGAATTAACCCCCCTAAACAAAAGCGATTTAGACAAGCTTTGCGCTAAA
GCTTTAACATTGCTCAAAAAACAAATAGAGCCTGGCGCTAAAACCTATCTTTTAAACAACAGCGCTGGCGATGCTAGAGC
GTTATTAAACCTTTTAGATTTGAGCGCTAAAATAGAAGATCCTATCACTTTAGAAACGCTGCAATCTTTACGGCCTCATA
GCCTAAATGACGGATCTTATAGTGATGATACGCATTATAATCTTACTAGTGCTTTAATCAAATCTTTAAGAGGGAGCGAT
GAAAACGCTTCCATCTATTATCTGGCGCGCTTGATTGCTGGCGGGGAAAACCCAGAATTTATCGCTAGAAGGCTGGTGGT
TTTTGCGAGCGAAGATATTGGTAACGCTAACCCAAACGCTCTAAATTTAGCCGCTTCTTGCTTGCTTTCAGTCAAACAAA
TCGGCTACCCTGAAGCGCGCATCATTTTAAGCCAATGCGTGATTTATCTGGCTTGTTCGCCCAAGTCTAACACGGCTTAT
AGAGCGATCAATCAGGCTTTGGATTGCGTTCAAAAAGGCTCACTCTACCCTATTCCTAAACACCTGCTGCCTAACGCTAA
AGATTACCTTTACCCGCATGATTATAACGGCTATGTCAAACAAGATTATTTGGAAAAACCCCTAGATTTGGTTTCTTCTC
AAGGCATAGGGTTTGAAAAAACCCTTTTAGAATGGCTTGATAAGATAAGAAATTGA

Upstream 100 bases:

>100_bases
AATTGCAAGACGCTCTGCACAAACACTCTAAAAACAACAAAACCCCAACGAAAAATTTAAACACCCCTACTAATTTTTAT
GAATTGATTTTATTTAAAAA

Downstream 100 bases:

>100_bases
TCTTATAAGTTACATTAAAATGCGATAATGGTAATAAAAAATCAGTATTTTTTGATTAAATTAAAATAATAATGAGTTTT
ATCTATGTTTCATCGCATTA

Product: recombination factor protein RarA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 391; Mature: 390

Protein sequence:

>391_residues
MSLTSLLNPKSLEDFLGQEHLIGKDAPLFKALQSKHFPHAFFYGPPGVGKTSLAQIIARMLERPILLFNATDFKLEDLRL
KLKNYQNTLLKPVIFIDETHRLNKTQQEFLLPIMEKDHALILGASTQDPNYSLSHAIRSRSFIFELTPLNKSDLDKLCAK
ALTLLKKQIEPGAKTYLLNNSAGDARALLNLLDLSAKIEDPITLETLQSLRPHSLNDGSYSDDTHYNLTSALIKSLRGSD
ENASIYYLARLIAGGENPEFIARRLVVFASEDIGNANPNALNLAASCLLSVKQIGYPEARIILSQCVIYLACSPKSNTAY
RAINQALDCVQKGSLYPIPKHLLPNAKDYLYPHDYNGYVKQDYLEKPLDLVSSQGIGFEKTLLEWLDKIRN

Sequences:

>Translated_391_residues
MSLTSLLNPKSLEDFLGQEHLIGKDAPLFKALQSKHFPHAFFYGPPGVGKTSLAQIIARMLERPILLFNATDFKLEDLRL
KLKNYQNTLLKPVIFIDETHRLNKTQQEFLLPIMEKDHALILGASTQDPNYSLSHAIRSRSFIFELTPLNKSDLDKLCAK
ALTLLKKQIEPGAKTYLLNNSAGDARALLNLLDLSAKIEDPITLETLQSLRPHSLNDGSYSDDTHYNLTSALIKSLRGSD
ENASIYYLARLIAGGENPEFIARRLVVFASEDIGNANPNALNLAASCLLSVKQIGYPEARIILSQCVIYLACSPKSNTAY
RAINQALDCVQKGSLYPIPKHLLPNAKDYLYPHDYNGYVKQDYLEKPLDLVSSQGIGFEKTLLEWLDKIRN
>Mature_390_residues
SLTSLLNPKSLEDFLGQEHLIGKDAPLFKALQSKHFPHAFFYGPPGVGKTSLAQIIARMLERPILLFNATDFKLEDLRLK
LKNYQNTLLKPVIFIDETHRLNKTQQEFLLPIMEKDHALILGASTQDPNYSLSHAIRSRSFIFELTPLNKSDLDKLCAKA
LTLLKKQIEPGAKTYLLNNSAGDARALLNLLDLSAKIEDPITLETLQSLRPHSLNDGSYSDDTHYNLTSALIKSLRGSDE
NASIYYLARLIAGGENPEFIARRLVVFASEDIGNANPNALNLAASCLLSVKQIGYPEARIILSQCVIYLACSPKSNTAYR
AINQALDCVQKGSLYPIPKHLLPNAKDYLYPHDYNGYVKQDYLEKPLDLVSSQGIGFEKTLLEWLDKIRN

Specific function: Unknown

COG id: COG2256

COG function: function code L; ATPase related to the helicase subunit of the Holliday junction resolvase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Macro domain [H]

Homologues:

Organism=Homo sapiens, GI18426902, Length=444, Percent_Identity=35.1351351351351, Blast_Score=218, Evalue=1e-56,
Organism=Homo sapiens, GI18426904, Length=421, Percent_Identity=35.6294536817102, Blast_Score=190, Evalue=2e-48,
Organism=Escherichia coli, GI1787119, Length=382, Percent_Identity=31.413612565445, Blast_Score=214, Evalue=1e-56,
Organism=Saccharomyces cerevisiae, GI6324111, Length=424, Percent_Identity=34.9056603773585, Blast_Score=225, Evalue=9e-60,
Organism=Saccharomyces cerevisiae, GI6324039, Length=256, Percent_Identity=25.78125, Blast_Score=70, Evalue=4e-13,
Organism=Drosophila melanogaster, GI19921076, Length=207, Percent_Identity=27.0531400966184, Blast_Score=66, Evalue=4e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002589
- InterPro:   IPR003593
- InterPro:   IPR008824
- InterPro:   IPR021886
- InterPro:   IPR022942 [H]

Pfam domain/function: PF01661 Macro; PF12002 MgsA_C; PF05496 RuvB_N [H]

EC number: NA

Molecular weight: Translated: 43756; Mature: 43625

Theoretical pI: Translated: 7.92; Mature: 7.92

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
0.5 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSLTSLLNPKSLEDFLGQEHLIGKDAPLFKALQSKHFPHAFFYGPPGVGKTSLAQIIARM
CCCHHHCCCHHHHHHCCCHHCCCCCCHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHH
LERPILLFNATDFKLEDLRLKLKNYQNTLLKPVIFIDETHRLNKTQQEFLLPIMEKDHAL
HCCCEEEEECCCCCHHHHHHHHHHHHHHHHCCEEEEECCHHCCCCHHHHHHHHHCCCCEE
ILGASTQDPNYSLSHAIRSRSFIFELTPLNKSDLDKLCAKALTLLKKQIEPGAKTYLLNN
EEECCCCCCCCHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEC
SAGDARALLNLLDLSAKIEDPITLETLQSLRPHSLNDGSYSDDTHYNLTSALIKSLRGSD
CCCHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCC
ENASIYYLARLIAGGENPEFIARRLVVFASEDIGNANPNALNLAASCLLSVKQIGYPEAR
CCCHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHH
IILSQCVIYLACSPKSNTAYRAINQALDCVQKGSLYPIPKHLLPNAKDYLYPHDYNGYVK
HHHHHHHEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCHHHCCCCHHCCCCCCCCCCCH
QDYLEKPLDLVSSQGIGFEKTLLEWLDKIRN
HHHHHHHHHHHHCCCCCHHHHHHHHHHHHCC
>Mature Secondary Structure 
SLTSLLNPKSLEDFLGQEHLIGKDAPLFKALQSKHFPHAFFYGPPGVGKTSLAQIIARM
CCHHHCCCHHHHHHCCCHHCCCCCCHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHH
LERPILLFNATDFKLEDLRLKLKNYQNTLLKPVIFIDETHRLNKTQQEFLLPIMEKDHAL
HCCCEEEEECCCCCHHHHHHHHHHHHHHHHCCEEEEECCHHCCCCHHHHHHHHHCCCCEE
ILGASTQDPNYSLSHAIRSRSFIFELTPLNKSDLDKLCAKALTLLKKQIEPGAKTYLLNN
EEECCCCCCCCHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEC
SAGDARALLNLLDLSAKIEDPITLETLQSLRPHSLNDGSYSDDTHYNLTSALIKSLRGSD
CCCHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCC
ENASIYYLARLIAGGENPEFIARRLVVFASEDIGNANPNALNLAASCLLSVKQIGYPEAR
CCCHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHH
IILSQCVIYLACSPKSNTAYRAINQALDCVQKGSLYPIPKHLLPNAKDYLYPHDYNGYVK
HHHHHHHEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCHHHCCCCHHCCCCCCCCCCCH
QDYLEKPLDLVSSQGIGFEKTLLEWLDKIRN
HHHHHHHHHHHHCCCCCHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 10360571 [H]