| Definition | Helicobacter pylori Shi470, complete genome. |
|---|---|
| Accession | NC_010698 |
| Length | 1,608,548 |
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The map label for this gene is fur [H]
Identifier: 188527229
GI number: 188527229
Start: 413777
End: 414229
Strand: Reverse
Name: fur [H]
Synonym: HPSH_02180
Alternate gene names: 188527229
Gene position: 414229-413777 (Counterclockwise)
Preceding gene: 188527230
Following gene: 188527215
Centisome position: 25.75
GC content: 38.19
Gene sequence:
>453_bases ATGAAAAGATTAGAAACTTTAGAATCCATTTTAGAGCGCTTGAGAATGTCTATCAAAAAAAACGGACTCAAAAATTCAAA ACAAAGAGAAGAAGTGGTGAGCGTTTTGTATCGCAGCGGCACACACCTAAGCCCTGAAGAAATCACGCATTCTATCCGCC AAAAGGACAAAAACACCAGCATTTCTTCAGTCTATCGCATTTTGAATTTCTTAGAAAAAGAAAATTTTATCTGTGTTTTA GAGACTTCAAAAAGCGGCCGGCGCTATGAAATTGCGGCTAAAGAACACCATGATCACATCATTTGTTTGCATTGCGGTAA GATCATTGAATTTGCAGACCCTGAAATTGAACACCGCCAGAATGAAGTCGTTAAAAAATATCAAGCCAAGCTGATTAGCC ATGACATGAAAATGTTTGTGTGGTGTAAAGAATGCCAAGAGAGCGCGTATTAA
Upstream 100 bases:
>100_bases ATTAAAATAATAATGAGTTTTATCTATGTTTCATCGCATTATTATTGTATAATAATATTCTAGTTATAAAAATCATTTTA CGGATAAGGAAAATATTAGC
Downstream 100 bases:
>100_bases AAGATTTTAAAAAAGAAGCTTAGATAGGGCGGCTATCTTTAATGGTTTTAAGGACTTCATTCAAGTCAAAACGCTTGAGT TTTAGATTTTTGATTTCTTC
Product: ferric uptake regulation protein
Products: NA
Alternate protein names: Ferric uptake regulator [H]
Number of amino acids: Translated: 150; Mature: 150
Protein sequence:
>150_residues MKRLETLESILERLRMSIKKNGLKNSKQREEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENFICVL ETSKSGRRYEIAAKEHHDHIICLHCGKIIEFADPEIEHRQNEVVKKYQAKLISHDMKMFVWCKECQESAY
Sequences:
>Translated_150_residues MKRLETLESILERLRMSIKKNGLKNSKQREEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENFICVL ETSKSGRRYEIAAKEHHDHIICLHCGKIIEFADPEIEHRQNEVVKKYQAKLISHDMKMFVWCKECQESAY >Mature_150_residues MKRLETLESILERLRMSIKKNGLKNSKQREEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENFICVL ETSKSGRRYEIAAKEHHDHIICLHCGKIIEFADPEIEHRQNEVVKKYQAKLISHDMKMFVWCKECQESAY
Specific function: Acts as a global negative controlling element, employing Fe(2+) as a cofactor to bind the operator of the repressed genes [H]
COG id: COG0735
COG function: function code P; Fe2+/Zn2+ uptake regulation proteins
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the Fur family [H]
Homologues:
Organism=Escherichia coli, GI1786899, Length=137, Percent_Identity=31.3868613138686, Blast_Score=84, Evalue=5e-18,
Paralogues:
None
Copy number: 3432 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002481 [H]
Pfam domain/function: PF01475 FUR [H]
EC number: NA
Molecular weight: Translated: 17707; Mature: 17707
Theoretical pI: Translated: 8.73; Mature: 8.73
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
3.3 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 6.0 %Cys+Met (Translated Protein) 3.3 %Cys (Mature Protein) 2.7 %Met (Mature Protein) 6.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKRLETLESILERLRMSIKKNGLKNSKQREEVVSVLYRSGTHLSPEEITHSIRQKDKNTS CCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCC ISSVYRILNFLEKENFICVLETSKSGRRYEIAAKEHHDHIICLHCGKIIEFADPEIEHRQ HHHHHHHHHHHHCCCCEEEEECCCCCCEEEEEECCCCCCEEEEECCCHHHHCCCHHHHHH NEVVKKYQAKLISHDMKMFVWCKECQESAY HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure MKRLETLESILERLRMSIKKNGLKNSKQREEVVSVLYRSGTHLSPEEITHSIRQKDKNTS CCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCC ISSVYRILNFLEKENFICVLETSKSGRRYEIAAKEHHDHIICLHCGKIIEFADPEIEHRQ HHHHHHHHHHHHCCCCEEEEECCCCCCEEEEEECCCCCCEEEEECCCHHHHCCCHHHHHH NEVVKKYQAKLISHDMKMFVWCKECQESAY HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: DNA [C]
Specific reaction: Protein + DNA = Protein-DNA [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9923682 [H]