| Definition | Helicobacter pylori Shi470, complete genome. |
|---|---|
| Accession | NC_010698 |
| Length | 1,608,548 |
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The map label for this gene is panB
Identifier: 188527199
GI number: 188527199
Start: 386037
End: 386849
Strand: Reverse
Name: panB
Synonym: HPSH_02030
Alternate gene names: 188527199
Gene position: 386849-386037 (Counterclockwise)
Preceding gene: 188527214
Following gene: 188527198
Centisome position: 24.05
GC content: 41.33
Gene sequence:
>813_bases ATGAGCATGCAAACCGCCCCAATTAAAAAAATCACTCTCAACCACCTCCAAGCTAAAAAAAATCAAGAAAAAATCATCGC TATCACCGCTTATGATGCGCTATTCGCTCAAATATTTGATCCGCTAGTGGATGTGATTTTAGTGGGCGATAGTTTGAATA TGAGTTTTTTCAATCAAAACGACACTTTAAATGCGAGTGTGGGAATGATGCTCTATCACACCAAAGCCGTGTGCGCGGGC GCTAAAATTCCTTTTATCATCACAGACATGCCCTTTGGAAGCTATAAAGATGAAAAAACAGCCCTAAAAAACGCCATTAG AGTTTATAAAGAAACCCAAGCGAGCGCGATCAAATTGGAGGGAGGGAAAGAAAAAGCGAAACTGGTTAAAACGCTCACTG ATGAGGGCGTTATCGTGGTAGGGCATATCGGCTTAATGCCCCAATTCGTGCGTCTTGATGGAGGTTATAAGATCAAGGGT AAAAATGAAGAGCAACAAAAAAAGCTTTTAGAAGACGCCTTGAGTTTAGAAGAAGCCGGTGCGGGTTTGTTGGTTTTAGA GGGTATAACCACCCCCATCGCTCAAAAAATCACGCAAACAATCAAAATCCCCACGATCGGCATAGGGAGCGGTAAAGATT GCGACGGGCAGATTTTAGTGTGGAGCGATATGTTAGGCTTTTTTGATAGTTTTAAGCCTAAATTCGTGCGAGAATACCTT AAGGGGAAAGAATTGGTTCAAAACGCTATCAAGCAATACGCTGATGATGTGAAAAAGGGAAACTTTCCTAACGAATTAGA AAGTTATCATTAA
Upstream 100 bases:
>100_bases ACTAAAATAATTAAAATGACCGGTTAAAATTGAGTGAAATTTTACCCACCCCAATAAAGTCATGCTACAATGCCACTATA TTTAACACTTAGGATTTTTA
Downstream 100 bases:
>100_bases ATGAAAGAACGGATAGTCAATTTAGAAACTTTGGATTTTGAAACTTCTCAAGAAGCGAGTTTGCGCCCTAATCTTTGGGA AGATTATATCGGTCAAGAAA
Product: 3-methyl-2-oxobutanoate hydroxymethyltransferase
Products: NA
Alternate protein names: Ketopantoate hydroxymethyltransferase; KPHMT [H]
Number of amino acids: Translated: 270; Mature: 269
Protein sequence:
>270_residues MSMQTAPIKKITLNHLQAKKNQEKIIAITAYDALFAQIFDPLVDVILVGDSLNMSFFNQNDTLNASVGMMLYHTKAVCAG AKIPFIITDMPFGSYKDEKTALKNAIRVYKETQASAIKLEGGKEKAKLVKTLTDEGVIVVGHIGLMPQFVRLDGGYKIKG KNEEQQKKLLEDALSLEEAGAGLLVLEGITTPIAQKITQTIKIPTIGIGSGKDCDGQILVWSDMLGFFDSFKPKFVREYL KGKELVQNAIKQYADDVKKGNFPNELESYH
Sequences:
>Translated_270_residues MSMQTAPIKKITLNHLQAKKNQEKIIAITAYDALFAQIFDPLVDVILVGDSLNMSFFNQNDTLNASVGMMLYHTKAVCAG AKIPFIITDMPFGSYKDEKTALKNAIRVYKETQASAIKLEGGKEKAKLVKTLTDEGVIVVGHIGLMPQFVRLDGGYKIKG KNEEQQKKLLEDALSLEEAGAGLLVLEGITTPIAQKITQTIKIPTIGIGSGKDCDGQILVWSDMLGFFDSFKPKFVREYL KGKELVQNAIKQYADDVKKGNFPNELESYH >Mature_269_residues SMQTAPIKKITLNHLQAKKNQEKIIAITAYDALFAQIFDPLVDVILVGDSLNMSFFNQNDTLNASVGMMLYHTKAVCAGA KIPFIITDMPFGSYKDEKTALKNAIRVYKETQASAIKLEGGKEKAKLVKTLTDEGVIVVGHIGLMPQFVRLDGGYKIKGK NEEQQKKLLEDALSLEEAGAGLLVLEGITTPIAQKITQTIKIPTIGIGSGKDCDGQILVWSDMLGFFDSFKPKFVREYLK GKELVQNAIKQYADDVKKGNFPNELESYH
Specific function: Catalyzes the reversible reaction in which hydroxymethyl group from 5,10-methylenetetrahydrofolate is tranferred onto alpha-ketoisovalerate to form ketopantoate [H]
COG id: COG0413
COG function: function code H; Ketopantoate hydroxymethyltransferase
Gene ontology:
Cell location: Cytoplasm (Potential) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the panB family [H]
Homologues:
Organism=Escherichia coli, GI1786326, Length=265, Percent_Identity=41.8867924528302, Blast_Score=202, Evalue=1e-53, Organism=Saccharomyces cerevisiae, GI6319653, Length=244, Percent_Identity=35.2459016393443, Blast_Score=148, Evalue=1e-36,
Paralogues:
None
Copy number: 1080 Molecules/Cell In: Growth-Phase, Minimal-Media (Based on E. coli). [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003700 - InterPro: IPR015813 [H]
Pfam domain/function: PF02548 Pantoate_transf [H]
EC number: =2.1.2.11 [H]
Molecular weight: Translated: 29819; Mature: 29688
Theoretical pI: Translated: 8.59; Mature: 8.59
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 3.0 %Met (Translated Protein) 3.7 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 3.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSMQTAPIKKITLNHLQAKKNQEKIIAITAYDALFAQIFDPLVDVILVGDSLNMSFFNQN CCCCCCCHHHHHHHHHHHCCCCCEEEEEEHHHHHHHHHHHHHHHHEEECCCCCEEEECCC DTLNASVGMMLYHTKAVCAGAKIPFIITDMPFGSYKDEKTALKNAIRVYKETQASAIKLE CCCCCHHHHHHEEHHHHHCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEC GGKEKAKLVKTLTDEGVIVVGHIGLMPQFVRLDGGYKIKGKNEEQQKKLLEDALSLEEAG CCHHHHHHHHHHCCCCEEEEEECCCCCEEEEECCCEEECCCCHHHHHHHHHHHHHHHHCC AGLLVLEGITTPIAQKITQTIKIPTIGIGSGKDCDGQILVWSDMLGFFDSFKPKFVREYL CCEEEECCCCHHHHHHHHHHHCCCEEECCCCCCCCCCEEEHHHHHHHHHCCCHHHHHHHH KGKELVQNAIKQYADDVKKGNFPNELESYH HHHHHHHHHHHHHHHHHHCCCCCCHHHCCC >Mature Secondary Structure SMQTAPIKKITLNHLQAKKNQEKIIAITAYDALFAQIFDPLVDVILVGDSLNMSFFNQN CCCCCCHHHHHHHHHHHCCCCCEEEEEEHHHHHHHHHHHHHHHHEEECCCCCEEEECCC DTLNASVGMMLYHTKAVCAGAKIPFIITDMPFGSYKDEKTALKNAIRVYKETQASAIKLE CCCCCHHHHHHEEHHHHHCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEC GGKEKAKLVKTLTDEGVIVVGHIGLMPQFVRLDGGYKIKGKNEEQQKKLLEDALSLEEAG CCHHHHHHHHHHCCCCEEEEEECCCCCEEEEECCCEEECCCCHHHHHHHHHHHHHHHHCC AGLLVLEGITTPIAQKITQTIKIPTIGIGSGKDCDGQILVWSDMLGFFDSFKPKFVREYL CCEEEECCCCHHHHHHHHHHHCCCEEECCCCCCCCCCEEEHHHHHHHHHCCCHHHHHHHH KGKELVQNAIKQYADDVKKGNFPNELESYH HHHHHHHHHHHHHHHHHHCCCCCCHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA