| Definition | Helicobacter pylori Shi470, complete genome. |
|---|---|
| Accession | NC_010698 |
| Length | 1,608,548 |
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The map label for this gene is 188527214
Identifier: 188527214
GI number: 188527214
Start: 400230
End: 401276
Strand: Reverse
Name: 188527214
Synonym: HPSH_02105
Alternate gene names: NA
Gene position: 401276-400230 (Counterclockwise)
Preceding gene: 188527215
Following gene: 188527199
Centisome position: 24.95
GC content: 37.15
Gene sequence:
>1047_bases ATGATGCAAGTTTATCACCTTTCACACATTGATTTAGACGGCTATGCATGCCAGCTTGTTTCAAAACAATTTTTTAAAAA TATCCAATGCTATAACGCTAATTACGGGCGTGAAGTTTCAGCAAGGATTTATGAGATTTTAAACGCAATCGCTCAATCTA AAGAGAGTAAATTCCTTATTTTGATTAGCGATTTGAATTTGAATTTAAACGAAGCGCAGTATTTGCAAGATAAAATCCAA GAACACCGCTTGCAAAATAGAAACATTCAAATCCAGCTTTTAGATCACCATATCAGCGGTAAGGAAGTGGCTGAGAGTTT CCATTGGTATTTTTTAGACACGAACCGTTGCGCGACTAAAATCGTGTATGAGTTTTTAAAAAAGCATTACGCTATTTTAG AGCCAAAAAACACAGCATGGCTAGAGCCTTTGGTGGAAATGGTCAATTCTGTGGATATTTGGGACACGCAAGGGTATGGC TTTGAATTAGGCAAGGTGTGTATGCGCATGATCACTCAAAGCTCTGAATTGAATCGCTTCATGTTTGATGATGAGAACCG CGATTATAAATTAAAGCTTTTAGAAGAAGTTAAAAACTATTTGTTTTTAGAAAATGCCCCTGTAGCCTATGATAATGATT TGTTCAAACTTAAAAAAATCGCTTTGGGGGGCGACCCTGATACAGAAACGATGGACAATATCTCTTCAAACGCGCAAACG CATTTGCTCTCTTTAAAAAAGCATGATTGCAGCGTTTATTACCAGGATAAAAAAGGGTTTTTAAGTTATTCTATGGGGGG TATTAGCGTGTTGGCTAACCTTTTTTTAACGCAAAATCCGGATTTTGATTTTTATATGGATGTGAATGCTAAAGGGAATG TGAGCTTGAGAGCGAACGGGAATTGCGATGTGTGCGAACTCAGTCAAATGTGTTTTAATGGGGGAGGGCATAGGAATGCG AGCGGAGGCAAGATTGATGGCTTTAGAGAGAGTTTTAATTATAGGGATATTAAAGAACAAATTGAAGAAATCTTTAATAA CGCTTAA
Upstream 100 bases:
>100_bases CGTGCTAAGCCATGCTGAATTGGATCCTAACTCTAATTTTGAAGCCTTAGGCACGATCCATATTAACTTTTAATGGATAA ATAATTGATAAAAAAGGAGA
Downstream 100 bases:
>100_bases AATAAGCTGTTTGTAAAAAGCTAACAAAAACTAAAAAGAATTTAAAACCTCTTTTTGGAAAGTTTAAAAATTTTTATTCT ATCGTTTTATGGCAAAAGCT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 348; Mature: 348
Protein sequence:
>348_residues MMQVYHLSHIDLDGYACQLVSKQFFKNIQCYNANYGREVSARIYEILNAIAQSKESKFLILISDLNLNLNEAQYLQDKIQ EHRLQNRNIQIQLLDHHISGKEVAESFHWYFLDTNRCATKIVYEFLKKHYAILEPKNTAWLEPLVEMVNSVDIWDTQGYG FELGKVCMRMITQSSELNRFMFDDENRDYKLKLLEEVKNYLFLENAPVAYDNDLFKLKKIALGGDPDTETMDNISSNAQT HLLSLKKHDCSVYYQDKKGFLSYSMGGISVLANLFLTQNPDFDFYMDVNAKGNVSLRANGNCDVCELSQMCFNGGGHRNA SGGKIDGFRESFNYRDIKEQIEEIFNNA
Sequences:
>Translated_348_residues MMQVYHLSHIDLDGYACQLVSKQFFKNIQCYNANYGREVSARIYEILNAIAQSKESKFLILISDLNLNLNEAQYLQDKIQ EHRLQNRNIQIQLLDHHISGKEVAESFHWYFLDTNRCATKIVYEFLKKHYAILEPKNTAWLEPLVEMVNSVDIWDTQGYG FELGKVCMRMITQSSELNRFMFDDENRDYKLKLLEEVKNYLFLENAPVAYDNDLFKLKKIALGGDPDTETMDNISSNAQT HLLSLKKHDCSVYYQDKKGFLSYSMGGISVLANLFLTQNPDFDFYMDVNAKGNVSLRANGNCDVCELSQMCFNGGGHRNA SGGKIDGFRESFNYRDIKEQIEEIFNNA >Mature_348_residues MMQVYHLSHIDLDGYACQLVSKQFFKNIQCYNANYGREVSARIYEILNAIAQSKESKFLILISDLNLNLNEAQYLQDKIQ EHRLQNRNIQIQLLDHHISGKEVAESFHWYFLDTNRCATKIVYEFLKKHYAILEPKNTAWLEPLVEMVNSVDIWDTQGYG FELGKVCMRMITQSSELNRFMFDDENRDYKLKLLEEVKNYLFLENAPVAYDNDLFKLKKIALGGDPDTETMDNISSNAQT HLLSLKKHDCSVYYQDKKGFLSYSMGGISVLANLFLTQNPDFDFYMDVNAKGNVSLRANGNCDVCELSQMCFNGGGHRNA SGGKIDGFRESFNYRDIKEQIEEIFNNA
Specific function: Unknown
COG id: COG2404
COG function: function code R; Predicted phosphohydrolase (DHH superfamily)
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 40239; Mature: 40239
Theoretical pI: Translated: 5.42; Mature: 5.42
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.3 %Cys (Translated Protein) 2.9 %Met (Translated Protein) 5.2 %Cys+Met (Translated Protein) 2.3 %Cys (Mature Protein) 2.9 %Met (Mature Protein) 5.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MMQVYHLSHIDLDGYACQLVSKQFFKNIQCYNANYGREVSARIYEILNAIAQSKESKFLI CCEEEEECEECCCHHHHHHHHHHHHCCCEEECCCCCCHHHHHHHHHHHHHHCCCCCCEEE LISDLNLNLNEAQYLQDKIQEHRLQNRNIQIQLLDHHISGKEVAESFHWYFLDTNRCATK EEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHCCCEEEEEECCHHHHH IVYEFLKKHYAILEPKNTAWLEPLVEMVNSVDIWDTQGYGFELGKVCMRMITQSSELNRF HHHHHHHHHHEEECCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCC MFDDENRDYKLKLLEEVKNYLFLENAPVAYDNDLFKLKKIALGGDPDTETMDNISSNAQT EECCCCCCHHHHHHHHHHHHEEECCCCCCCCCCHHHHHHEECCCCCCCHHHHHHCCCCHH HLLSLKKHDCSVYYQDKKGFLSYSMGGISVLANLFLTQNPDFDFYMDVNAKGNVSLRANG HHHEEECCCCEEEEECCCCCEEECCCHHHHHHHHHHCCCCCCCEEEEECCCCCEEEEECC NCDVCELSQMCFNGGGHRNASGGKIDGFRESFNYRDIKEQIEEIFNNA CCCHHHHHHHHHCCCCCCCCCCCCCCCHHHCCCHHHHHHHHHHHHCCC >Mature Secondary Structure MMQVYHLSHIDLDGYACQLVSKQFFKNIQCYNANYGREVSARIYEILNAIAQSKESKFLI CCEEEEECEECCCHHHHHHHHHHHHCCCEEECCCCCCHHHHHHHHHHHHHHCCCCCCEEE LISDLNLNLNEAQYLQDKIQEHRLQNRNIQIQLLDHHISGKEVAESFHWYFLDTNRCATK EEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHCCCEEEEEECCHHHHH IVYEFLKKHYAILEPKNTAWLEPLVEMVNSVDIWDTQGYGFELGKVCMRMITQSSELNRF HHHHHHHHHHEEECCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCC MFDDENRDYKLKLLEEVKNYLFLENAPVAYDNDLFKLKKIALGGDPDTETMDNISSNAQT EECCCCCCHHHHHHHHHHHHEEECCCCCCCCCCHHHHHHEECCCCCCCHHHHHHCCCCHH HLLSLKKHDCSVYYQDKKGFLSYSMGGISVLANLFLTQNPDFDFYMDVNAKGNVSLRANG HHHEEECCCCEEEEECCCCCEEECCCHHHHHHHHHHCCCCCCCEEEEECCCCCEEEEECC NCDVCELSQMCFNGGGHRNASGGKIDGFRESFNYRDIKEQIEEIFNNA CCCHHHHHHHHHCCCCCCCCCCCCCCCHHHCCCHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA