Definition Helicobacter pylori Shi470, complete genome.
Accession NC_010698
Length 1,608,548

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The map label for this gene is 188527214

Identifier: 188527214

GI number: 188527214

Start: 400230

End: 401276

Strand: Reverse

Name: 188527214

Synonym: HPSH_02105

Alternate gene names: NA

Gene position: 401276-400230 (Counterclockwise)

Preceding gene: 188527215

Following gene: 188527199

Centisome position: 24.95

GC content: 37.15

Gene sequence:

>1047_bases
ATGATGCAAGTTTATCACCTTTCACACATTGATTTAGACGGCTATGCATGCCAGCTTGTTTCAAAACAATTTTTTAAAAA
TATCCAATGCTATAACGCTAATTACGGGCGTGAAGTTTCAGCAAGGATTTATGAGATTTTAAACGCAATCGCTCAATCTA
AAGAGAGTAAATTCCTTATTTTGATTAGCGATTTGAATTTGAATTTAAACGAAGCGCAGTATTTGCAAGATAAAATCCAA
GAACACCGCTTGCAAAATAGAAACATTCAAATCCAGCTTTTAGATCACCATATCAGCGGTAAGGAAGTGGCTGAGAGTTT
CCATTGGTATTTTTTAGACACGAACCGTTGCGCGACTAAAATCGTGTATGAGTTTTTAAAAAAGCATTACGCTATTTTAG
AGCCAAAAAACACAGCATGGCTAGAGCCTTTGGTGGAAATGGTCAATTCTGTGGATATTTGGGACACGCAAGGGTATGGC
TTTGAATTAGGCAAGGTGTGTATGCGCATGATCACTCAAAGCTCTGAATTGAATCGCTTCATGTTTGATGATGAGAACCG
CGATTATAAATTAAAGCTTTTAGAAGAAGTTAAAAACTATTTGTTTTTAGAAAATGCCCCTGTAGCCTATGATAATGATT
TGTTCAAACTTAAAAAAATCGCTTTGGGGGGCGACCCTGATACAGAAACGATGGACAATATCTCTTCAAACGCGCAAACG
CATTTGCTCTCTTTAAAAAAGCATGATTGCAGCGTTTATTACCAGGATAAAAAAGGGTTTTTAAGTTATTCTATGGGGGG
TATTAGCGTGTTGGCTAACCTTTTTTTAACGCAAAATCCGGATTTTGATTTTTATATGGATGTGAATGCTAAAGGGAATG
TGAGCTTGAGAGCGAACGGGAATTGCGATGTGTGCGAACTCAGTCAAATGTGTTTTAATGGGGGAGGGCATAGGAATGCG
AGCGGAGGCAAGATTGATGGCTTTAGAGAGAGTTTTAATTATAGGGATATTAAAGAACAAATTGAAGAAATCTTTAATAA
CGCTTAA

Upstream 100 bases:

>100_bases
CGTGCTAAGCCATGCTGAATTGGATCCTAACTCTAATTTTGAAGCCTTAGGCACGATCCATATTAACTTTTAATGGATAA
ATAATTGATAAAAAAGGAGA

Downstream 100 bases:

>100_bases
AATAAGCTGTTTGTAAAAAGCTAACAAAAACTAAAAAGAATTTAAAACCTCTTTTTGGAAAGTTTAAAAATTTTTATTCT
ATCGTTTTATGGCAAAAGCT

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 348; Mature: 348

Protein sequence:

>348_residues
MMQVYHLSHIDLDGYACQLVSKQFFKNIQCYNANYGREVSARIYEILNAIAQSKESKFLILISDLNLNLNEAQYLQDKIQ
EHRLQNRNIQIQLLDHHISGKEVAESFHWYFLDTNRCATKIVYEFLKKHYAILEPKNTAWLEPLVEMVNSVDIWDTQGYG
FELGKVCMRMITQSSELNRFMFDDENRDYKLKLLEEVKNYLFLENAPVAYDNDLFKLKKIALGGDPDTETMDNISSNAQT
HLLSLKKHDCSVYYQDKKGFLSYSMGGISVLANLFLTQNPDFDFYMDVNAKGNVSLRANGNCDVCELSQMCFNGGGHRNA
SGGKIDGFRESFNYRDIKEQIEEIFNNA

Sequences:

>Translated_348_residues
MMQVYHLSHIDLDGYACQLVSKQFFKNIQCYNANYGREVSARIYEILNAIAQSKESKFLILISDLNLNLNEAQYLQDKIQ
EHRLQNRNIQIQLLDHHISGKEVAESFHWYFLDTNRCATKIVYEFLKKHYAILEPKNTAWLEPLVEMVNSVDIWDTQGYG
FELGKVCMRMITQSSELNRFMFDDENRDYKLKLLEEVKNYLFLENAPVAYDNDLFKLKKIALGGDPDTETMDNISSNAQT
HLLSLKKHDCSVYYQDKKGFLSYSMGGISVLANLFLTQNPDFDFYMDVNAKGNVSLRANGNCDVCELSQMCFNGGGHRNA
SGGKIDGFRESFNYRDIKEQIEEIFNNA
>Mature_348_residues
MMQVYHLSHIDLDGYACQLVSKQFFKNIQCYNANYGREVSARIYEILNAIAQSKESKFLILISDLNLNLNEAQYLQDKIQ
EHRLQNRNIQIQLLDHHISGKEVAESFHWYFLDTNRCATKIVYEFLKKHYAILEPKNTAWLEPLVEMVNSVDIWDTQGYG
FELGKVCMRMITQSSELNRFMFDDENRDYKLKLLEEVKNYLFLENAPVAYDNDLFKLKKIALGGDPDTETMDNISSNAQT
HLLSLKKHDCSVYYQDKKGFLSYSMGGISVLANLFLTQNPDFDFYMDVNAKGNVSLRANGNCDVCELSQMCFNGGGHRNA
SGGKIDGFRESFNYRDIKEQIEEIFNNA

Specific function: Unknown

COG id: COG2404

COG function: function code R; Predicted phosphohydrolase (DHH superfamily)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 40239; Mature: 40239

Theoretical pI: Translated: 5.42; Mature: 5.42

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
5.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMQVYHLSHIDLDGYACQLVSKQFFKNIQCYNANYGREVSARIYEILNAIAQSKESKFLI
CCEEEEECEECCCHHHHHHHHHHHHCCCEEECCCCCCHHHHHHHHHHHHHHCCCCCCEEE
LISDLNLNLNEAQYLQDKIQEHRLQNRNIQIQLLDHHISGKEVAESFHWYFLDTNRCATK
EEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHCCCEEEEEECCHHHHH
IVYEFLKKHYAILEPKNTAWLEPLVEMVNSVDIWDTQGYGFELGKVCMRMITQSSELNRF
HHHHHHHHHHEEECCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCC
MFDDENRDYKLKLLEEVKNYLFLENAPVAYDNDLFKLKKIALGGDPDTETMDNISSNAQT
EECCCCCCHHHHHHHHHHHHEEECCCCCCCCCCHHHHHHEECCCCCCCHHHHHHCCCCHH
HLLSLKKHDCSVYYQDKKGFLSYSMGGISVLANLFLTQNPDFDFYMDVNAKGNVSLRANG
HHHEEECCCCEEEEECCCCCEEECCCHHHHHHHHHHCCCCCCCEEEEECCCCCEEEEECC
NCDVCELSQMCFNGGGHRNASGGKIDGFRESFNYRDIKEQIEEIFNNA
CCCHHHHHHHHHCCCCCCCCCCCCCCCHHHCCCHHHHHHHHHHHHCCC
>Mature Secondary Structure
MMQVYHLSHIDLDGYACQLVSKQFFKNIQCYNANYGREVSARIYEILNAIAQSKESKFLI
CCEEEEECEECCCHHHHHHHHHHHHCCCEEECCCCCCHHHHHHHHHHHHHHCCCCCCEEE
LISDLNLNLNEAQYLQDKIQEHRLQNRNIQIQLLDHHISGKEVAESFHWYFLDTNRCATK
EEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHCCCEEEEEECCHHHHH
IVYEFLKKHYAILEPKNTAWLEPLVEMVNSVDIWDTQGYGFELGKVCMRMITQSSELNRF
HHHHHHHHHHEEECCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCC
MFDDENRDYKLKLLEEVKNYLFLENAPVAYDNDLFKLKKIALGGDPDTETMDNISSNAQT
EECCCCCCHHHHHHHHHHHHEEECCCCCCCCCCHHHHHHEECCCCCCCHHHHHHCCCCHH
HLLSLKKHDCSVYYQDKKGFLSYSMGGISVLANLFLTQNPDFDFYMDVNAKGNVSLRANG
HHHEEECCCCEEEEECCCCCEEECCCHHHHHHHHHHCCCCCCCEEEEECCCCCEEEEECC
NCDVCELSQMCFNGGGHRNASGGKIDGFRESFNYRDIKEQIEEIFNNA
CCCHHHHHHHHHCCCCCCCCCCCCCCCHHHCCCHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA