| Definition | Helicobacter pylori Shi470, complete genome. |
|---|---|
| Accession | NC_010698 |
| Length | 1,608,548 |
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The map label for this gene is 188526963
Identifier: 188526963
GI number: 188526963
Start: 151658
End: 152614
Strand: Direct
Name: 188526963
Synonym: HPSH_00800
Alternate gene names: NA
Gene position: 151658-152614 (Clockwise)
Preceding gene: 188526962
Following gene: 188526965
Centisome position: 9.43
GC content: 40.44
Gene sequence:
>957_bases ATGTTGAGTAGAGACATTGTCCAATATTCCAAGATTCGCACCGAGCTATACGCTTATCTTACCTATTTGTTTTCGCACAA TATCCGCAACCACCTCCCTGAAATCACTTTGGATTATTTAAACAAACAGATCAAAAAAATGCATGCTGAAATCAAAATGG CAAAAAATTTTTTTGTGTTAGACGCTAAAGGCATGCTAATTCTTAAGCCAAGCCAGCTTAAAGAGCAGGGGCATAAGGAG GGGATATTAGAGCATGATTTAACAGAAGGGATTGAATTAGAATCGCATGCCAGCTTTAGCGATAAGTATTATTTTTATCA AGCCGTGAGTGAAAAGCGTTGCATTTTAACGGACCCCTATCCTTCTAAAAAAGGAAACCATTTGGTAGTGAGCGCGTCTT ACCCGGTGTATGATCAAAATAATGATCTAGCGTTTGTGGTGTGCTTGCAAATCCCTTTGAGGGTGGCGATTGAAATCAGT TCGCCTTCAAAGTATTTCAGAACCTTTAGCGAAGGGAGCATGGTCATGTATTTTATGATTTCTATCATGCTCACTTTGGT GTCGTTGCTTTTATTTGTGAAATGCATTTCTAGCTTTTGGACAGCGATTGTCAATTTTAGCAGTTTTGACATTAAAGAAG TGTTCCACCCCATTGTGCTTTTAACCCTAGCCTTAGCCACCTTTGATCTGGTCAAGGCGATTTTTGAAGAGGAAGTGTTG GGTAAAAATAGCGGGGACAACCACCATGCGATCCACCGCACGATGATTAGGTTTTTAGGCTCTATCATTATCGCATTAGC CATTGAAGCGTTGATGTTAGTGTTTAAATTCAGCGTGAGCGAACCGGATAAAATCACTTATGCGGTGTATTTGGCTATCG GTGTGGCAGTGCTTTTGATCAGTTTAGCGATTTATGTTAAATTCGCCTATAGCGTGTTGCCCAAACGAGAACGCTAA
Upstream 100 bases:
>100_bases AAAAAAACGCCTCTTTTATCATTGATGCAAGGGGTGGTTTAAATAATTCTTTAAAACAAGTGCTACAATTCATCGCATAA TTTTTTTTAAAGGCCTTTTG
Downstream 100 bases:
>100_bases GAGTTAAAAAATTTTTCTTTTAAGCGTTTGAAAATCCTATTCAATCTAAAAAAGACATATTCTAAAAGGGTTTTTGGATT GAGTAGGGGGGCAAGAAATT
Product: hypothetical protein
Products: NA
Alternate protein names: General Glycosylation Pathway Protein PglG; Inner Membrane Protein; Cache Domain Protein
Number of amino acids: Translated: 318; Mature: 318
Protein sequence:
>318_residues MLSRDIVQYSKIRTELYAYLTYLFSHNIRNHLPEITLDYLNKQIKKMHAEIKMAKNFFVLDAKGMLILKPSQLKEQGHKE GILEHDLTEGIELESHASFSDKYYFYQAVSEKRCILTDPYPSKKGNHLVVSASYPVYDQNNDLAFVVCLQIPLRVAIEIS SPSKYFRTFSEGSMVMYFMISIMLTLVSLLLFVKCISSFWTAIVNFSSFDIKEVFHPIVLLTLALATFDLVKAIFEEEVL GKNSGDNHHAIHRTMIRFLGSIIIALAIEALMLVFKFSVSEPDKITYAVYLAIGVAVLLISLAIYVKFAYSVLPKRER
Sequences:
>Translated_318_residues MLSRDIVQYSKIRTELYAYLTYLFSHNIRNHLPEITLDYLNKQIKKMHAEIKMAKNFFVLDAKGMLILKPSQLKEQGHKE GILEHDLTEGIELESHASFSDKYYFYQAVSEKRCILTDPYPSKKGNHLVVSASYPVYDQNNDLAFVVCLQIPLRVAIEIS SPSKYFRTFSEGSMVMYFMISIMLTLVSLLLFVKCISSFWTAIVNFSSFDIKEVFHPIVLLTLALATFDLVKAIFEEEVL GKNSGDNHHAIHRTMIRFLGSIIIALAIEALMLVFKFSVSEPDKITYAVYLAIGVAVLLISLAIYVKFAYSVLPKRER >Mature_318_residues MLSRDIVQYSKIRTELYAYLTYLFSHNIRNHLPEITLDYLNKQIKKMHAEIKMAKNFFVLDAKGMLILKPSQLKEQGHKE GILEHDLTEGIELESHASFSDKYYFYQAVSEKRCILTDPYPSKKGNHLVVSASYPVYDQNNDLAFVVCLQIPLRVAIEIS SPSKYFRTFSEGSMVMYFMISIMLTLVSLLLFVKCISSFWTAIVNFSSFDIKEVFHPIVLLTLALATFDLVKAIFEEEVL GKNSGDNHHAIHRTMIRFLGSIIIALAIEALMLVFKFSVSEPDKITYAVYLAIGVAVLLISLAIYVKFAYSVLPKRER
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 36378; Mature: 36378
Theoretical pI: Translated: 8.40; Mature: 8.40
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 3.1 %Met (Translated Protein) 4.1 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 3.1 %Met (Mature Protein) 4.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLSRDIVQYSKIRTELYAYLTYLFSHNIRNHLPEITLDYLNKQIKKMHAEIKMAKNFFVL CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCCEEEE DAKGMLILKPSQLKEQGHKEGILEHDLTEGIELESHASFSDKYYFYQAVSEKRCILTDPY ECCCEEEECHHHHHHCHHHCCCHHHHHHCCCCCCCCCCCCCCHHHEEHHCCCCEEEECCC PSKKGNHLVVSASYPVYDQNNDLAFVVCLQIPLRVAIEISSPSKYFRTFSEGSMVMYFMI CCCCCCEEEEEECCCEEECCCCEEEEEEEECCEEEEEEECCCHHHHHHHCCCCHHHHHHH SIMLTLVSLLLFVKCISSFWTAIVNFSSFDIKEVFHPIVLLTLALATFDLVKAIFEEEVL HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH GKNSGDNHHAIHRTMIRFLGSIIIALAIEALMLVFKFSVSEPDKITYAVYLAIGVAVLLI CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHH SLAIYVKFAYSVLPKRER HHHHHHHHHHHHCCCCCC >Mature Secondary Structure MLSRDIVQYSKIRTELYAYLTYLFSHNIRNHLPEITLDYLNKQIKKMHAEIKMAKNFFVL CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCCEEEE DAKGMLILKPSQLKEQGHKEGILEHDLTEGIELESHASFSDKYYFYQAVSEKRCILTDPY ECCCEEEECHHHHHHCHHHCCCHHHHHHCCCCCCCCCCCCCCHHHEEHHCCCCEEEECCC PSKKGNHLVVSASYPVYDQNNDLAFVVCLQIPLRVAIEISSPSKYFRTFSEGSMVMYFMI CCCCCCEEEEEECCCEEECCCCEEEEEEEECCEEEEEEECCCHHHHHHHCCCCHHHHHHH SIMLTLVSLLLFVKCISSFWTAIVNFSSFDIKEVFHPIVLLTLALATFDLVKAIFEEEVL HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH GKNSGDNHHAIHRTMIRFLGSIIIALAIEALMLVFKFSVSEPDKITYAVYLAIGVAVLLI CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHH SLAIYVKFAYSVLPKRER HHHHHHHHHHHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA