| Definition | Helicobacter pylori Shi470, complete genome. |
|---|---|
| Accession | NC_010698 |
| Length | 1,608,548 |
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The map label for this gene is 188526871
Identifier: 188526871
GI number: 188526871
Start: 57058
End: 57408
Strand: Direct
Name: 188526871
Synonym: HPSH_00305
Alternate gene names: NA
Gene position: 57058-57408 (Clockwise)
Preceding gene: 188526870
Following gene: 188526882
Centisome position: 3.55
GC content: 35.04
Gene sequence:
>351_bases ATGTTTTCTCATAAGGTTTATTTGGAGGGTTGCACCCTTGAATTAAGAAAGATTTGCGATGATTTTGCAGAAAATGCCAT GCAAGATGATTTAGGGCAGAAAATCAGAGATGAGGTGTTAGAGGACATGCTAAAAATCGCGCATGATTTAGAAAATTTAG AGCAAGACACTCAATACCAAAGAAGAAGAATTGATGAGCAAATTGAAGAAGCCAAGAGTTTGATGAAGAAAATTGATATG AATTTCCACTCACAGAGCGAAATTGATAAGCTTATGCGTGAAGCTAAAGAGCATGAAAAAGAAGCCAATAGACGCTATGA TGAATACTTAAAATCTAAGGATAAAGAATGA
Upstream 100 bases:
>100_bases GCTAGTGGTGTGGCGCTGTTTTTAGACACTGATGATGGCTCAAAACATGCGCTGTTGCACCTTAAAATGTTTTTAAAAAA ACTAGAATCAAGGGGTTAAA
Downstream 100 bases:
>100_bases TTGGAATCAATACCTTGTTGCAAAAACTGGATGATGCCCTAGATAAAGTTGTCCATCAAAAAGAACCAAAGAGTTTTCTC GATCCGATCGTTTCAGAAAT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 116; Mature: 116
Protein sequence:
>116_residues MFSHKVYLEGCTLELRKICDDFAENAMQDDLGQKIRDEVLEDMLKIAHDLENLEQDTQYQRRRIDEQIEEAKSLMKKIDM NFHSQSEIDKLMREAKEHEKEANRRYDEYLKSKDKE
Sequences:
>Translated_116_residues MFSHKVYLEGCTLELRKICDDFAENAMQDDLGQKIRDEVLEDMLKIAHDLENLEQDTQYQRRRIDEQIEEAKSLMKKIDM NFHSQSEIDKLMREAKEHEKEANRRYDEYLKSKDKE >Mature_116_residues MFSHKVYLEGCTLELRKICDDFAENAMQDDLGQKIRDEVLEDMLKIAHDLENLEQDTQYQRRRIDEQIEEAKSLMKKIDM NFHSQSEIDKLMREAKEHEKEANRRYDEYLKSKDKE
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 14028; Mature: 14028
Theoretical pI: Translated: 4.72; Mature: 4.72
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.7 %Cys (Translated Protein) 5.2 %Met (Translated Protein) 6.9 %Cys+Met (Translated Protein) 1.7 %Cys (Mature Protein) 5.2 %Met (Mature Protein) 6.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MFSHKVYLEGCTLELRKICDDFAENAMQDDLGQKIRDEVLEDMLKIAHDLENLEQDTQYQ CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH RRRIDEQIEEAKSLMKKIDMNFHSQSEIDKLMREAKEHEKEANRRYDEYLKSKDKE HHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC >Mature Secondary Structure MFSHKVYLEGCTLELRKICDDFAENAMQDDLGQKIRDEVLEDMLKIAHDLENLEQDTQYQ CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH RRRIDEQIEEAKSLMKKIDMNFHSQSEIDKLMREAKEHEKEANRRYDEYLKSKDKE HHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA