| Definition | Helicobacter pylori Shi470, complete genome. |
|---|---|
| Accession | NC_010698 |
| Length | 1,608,548 |
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The map label for this gene is 188526829
Identifier: 188526829
GI number: 188526829
Start: 16686
End: 18026
Strand: Direct
Name: 188526829
Synonym: HPSH_00095
Alternate gene names: NA
Gene position: 16686-18026 (Clockwise)
Preceding gene: 188526828
Following gene: 188526830
Centisome position: 1.04
GC content: 39.45
Gene sequence:
>1341_bases ATGGACTTAGAACATTTTAACACGCTCTATTATGAAGAAAGCCCTAAAAAAGCTTATGAATATTCCAAACAATTCACTAA GAAAAAAAAGAACGCTCTTTTATGGGATTTGCAAAACGGCTTGAGCGCTTTATACGCAAGAGATTACAAGACTTCTTTAG GGGTATTAGATCAAGCCGAACAACGCTTTGATAAAACGCAAAGCGCTTTTACAAGAGGGGCTGGTTATGTGGGCGCTACC ATGATTAATGATAATGTGCGCGCTTATGGGGGGAATATTTATGAGGGCGTTTTAATCAATTATTACAAAGCGATAGACTA CATGCTTTTAAACGATAGCGCGAACGCTAGGGTGCAATTCAACCGCGCGAACGAACGCCAGCGCAGGGCTAAAGAATTTT ATTATGAGGAAGTGCAAAAAGCCATTAAAGAGATCGATTCTAGCAAAAAGCACAACATTAATATGGAACGCTCTAGGGCA GAAGTGAGCGAGATCTTAAACAACACCTATTCTAATTTAGACAAATACGAAGCTTATCAAGGCTTGCTTAACCCGGCGGT TTCGTATCTTTCAGGGTTGTTTTACGCTTTAAATGGGGATAAAAATAAGGGGTTAGGCTATCTTAATGAAGCCTATGGGA TCAGTCAAAGCCCTTTCGTGGCTAAAGACTTGGTTTTTTTCAAAAACCCTAATAGGAGTTATTTCACTTGGATCATCATT GAAGATGGCAAAGAGCCACAAAAAAGCGAATTTAAAATTGATGTGCCTATCTATGCGATCGATTCGATTTATAATGTGAG TGTGGCCTTGCCCAAGCTAGAAAAAGGGGAAGCGTTTTATCAAAATTTCACTTTAAAAGACGGCGAAAAAGTAACACCCT TTGACACTTTAGCCTCAATAGACGCGGTGGTTTCTAGCGAGTTTAGGAAGCAATTGCCCTACATTATCACCAGAGCCATT TTATCGGCTACTTTTAAGGTGGGCATGCAAGCGGTGGCGAATTATTATTTGGGGTTTGTTGGAGGGCTAGTAACTTCGTT GTATTCAGGCGTTAGCACCTTTGCAGATACCAGGAACACGAGCATTTTTGCCCATAAAATCTATCTTATGCGTATCAAAA ATAAAGCCTTTGAAAATTATGAAGTTCAAGCTGATTCTATTGACGCTTTTTCGTTTTCATTAAAGCCTTGTAAAAGATCG CTTGAAAGCCCTAAAGTCATTGACGCTAGGGAATTGCTTTCTGGGTTTGTAACAGCCCCACAAATCTTTTGCTCTAACCG CCATAATATTTTATACGTGCGCAGTTTTAAAAACGGGTTTGTTTTGAATCGTTTAAAATGA
Upstream 100 bases:
>100_bases CAAGCAAAAAATGCCAATTAAAAGGGTTAGATTGAAAATATTCGTTCTGTTGATGTCGGTAATTTTAGGAGTATCATTAA CAGGTTGCATAGGCTATCGT
Downstream 100 bases:
>100_bases TTTAAAAACCCCCAAAGTTTTAAGTGTCATTGGCATTAAACACAAACACGATATAATTATGAAACGATACGAAAACCTAA ATTAAGGGGAAGTCATGGCT
Product: hypothetical protein
Products: NA
Alternate protein names: Sporulation Domain-Containing Protein
Number of amino acids: Translated: 446; Mature: 446
Protein sequence:
>446_residues MDLEHFNTLYYEESPKKAYEYSKQFTKKKKNALLWDLQNGLSALYARDYKTSLGVLDQAEQRFDKTQSAFTRGAGYVGAT MINDNVRAYGGNIYEGVLINYYKAIDYMLLNDSANARVQFNRANERQRRAKEFYYEEVQKAIKEIDSSKKHNINMERSRA EVSEILNNTYSNLDKYEAYQGLLNPAVSYLSGLFYALNGDKNKGLGYLNEAYGISQSPFVAKDLVFFKNPNRSYFTWIII EDGKEPQKSEFKIDVPIYAIDSIYNVSVALPKLEKGEAFYQNFTLKDGEKVTPFDTLASIDAVVSSEFRKQLPYIITRAI LSATFKVGMQAVANYYLGFVGGLVTSLYSGVSTFADTRNTSIFAHKIYLMRIKNKAFENYEVQADSIDAFSFSLKPCKRS LESPKVIDARELLSGFVTAPQIFCSNRHNILYVRSFKNGFVLNRLK
Sequences:
>Translated_446_residues MDLEHFNTLYYEESPKKAYEYSKQFTKKKKNALLWDLQNGLSALYARDYKTSLGVLDQAEQRFDKTQSAFTRGAGYVGAT MINDNVRAYGGNIYEGVLINYYKAIDYMLLNDSANARVQFNRANERQRRAKEFYYEEVQKAIKEIDSSKKHNINMERSRA EVSEILNNTYSNLDKYEAYQGLLNPAVSYLSGLFYALNGDKNKGLGYLNEAYGISQSPFVAKDLVFFKNPNRSYFTWIII EDGKEPQKSEFKIDVPIYAIDSIYNVSVALPKLEKGEAFYQNFTLKDGEKVTPFDTLASIDAVVSSEFRKQLPYIITRAI LSATFKVGMQAVANYYLGFVGGLVTSLYSGVSTFADTRNTSIFAHKIYLMRIKNKAFENYEVQADSIDAFSFSLKPCKRS LESPKVIDARELLSGFVTAPQIFCSNRHNILYVRSFKNGFVLNRLK >Mature_446_residues MDLEHFNTLYYEESPKKAYEYSKQFTKKKKNALLWDLQNGLSALYARDYKTSLGVLDQAEQRFDKTQSAFTRGAGYVGAT MINDNVRAYGGNIYEGVLINYYKAIDYMLLNDSANARVQFNRANERQRRAKEFYYEEVQKAIKEIDSSKKHNINMERSRA EVSEILNNTYSNLDKYEAYQGLLNPAVSYLSGLFYALNGDKNKGLGYLNEAYGISQSPFVAKDLVFFKNPNRSYFTWIII EDGKEPQKSEFKIDVPIYAIDSIYNVSVALPKLEKGEAFYQNFTLKDGEKVTPFDTLASIDAVVSSEFRKQLPYIITRAI LSATFKVGMQAVANYYLGFVGGLVTSLYSGVSTFADTRNTSIFAHKIYLMRIKNKAFENYEVQADSIDAFSFSLKPCKRS LESPKVIDARELLSGFVTAPQIFCSNRHNILYVRSFKNGFVLNRLK
Specific function: Unknown
COG id: COG3014
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 50948; Mature: 50948
Theoretical pI: Translated: 9.37; Mature: 9.37
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 1.8 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 1.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDLEHFNTLYYEESPKKAYEYSKQFTKKKKNALLWDLQNGLSALYARDYKTSLGVLDQAE CCCCHHCCEEECCCCHHHHHHHHHHHHHHHCCEEEEHHHHHHHHHHHHHHHHHHHHHHHH QRFDKTQSAFTRGAGYVGATMINDNVRAYGGNIYEGVLINYYKAIDYMLLNDSANARVQF HHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHEEEEECCCCCCEEEE NRANERQRRAKEFYYEEVQKAIKEIDSSKKHNINMERSRAEVSEILNNTYSNLDKYEAYQ CCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH GLLNPAVSYLSGLFYALNGDKNKGLGYLNEAYGISQSPFVAKDLVFFKNPNRSYFTWIII HHHHHHHHHHHHHEEEECCCCCCCCCCHHHHCCCCCCCCHHHHEEEEECCCCCEEEEEEE EDGKEPQKSEFKIDVPIYAIDSIYNVSVALPKLEKGEAFYQNFTLKDGEKVTPFDTLASI ECCCCCCCCCEEEECCEEEECCEEEEEEECCCCCCCCHHHHCCCCCCCCCCCCHHHHHHH DAVVSSEFRKQLPYIITRAILSATFKVGMQAVANYYLGFVGGLVTSLYSGVSTFADTRNT HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC SIFAHKIYLMRIKNKAFENYEVQADSIDAFSFSLKPCKRSLESPKVIDARELLSGFVTAP EEEEEEEEEEEEHHHCCCCCEEECCCCCCEEEECHHHHHCCCCCCCCCHHHHHHHHHCCC QIFCSNRHNILYVRSFKNGFVLNRLK HHHHCCCCCEEEEEECCCCCEEECCC >Mature Secondary Structure MDLEHFNTLYYEESPKKAYEYSKQFTKKKKNALLWDLQNGLSALYARDYKTSLGVLDQAE CCCCHHCCEEECCCCHHHHHHHHHHHHHHHCCEEEEHHHHHHHHHHHHHHHHHHHHHHHH QRFDKTQSAFTRGAGYVGATMINDNVRAYGGNIYEGVLINYYKAIDYMLLNDSANARVQF HHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHEEEEECCCCCCEEEE NRANERQRRAKEFYYEEVQKAIKEIDSSKKHNINMERSRAEVSEILNNTYSNLDKYEAYQ CCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH GLLNPAVSYLSGLFYALNGDKNKGLGYLNEAYGISQSPFVAKDLVFFKNPNRSYFTWIII HHHHHHHHHHHHHEEEECCCCCCCCCCHHHHCCCCCCCCHHHHEEEEECCCCCEEEEEEE EDGKEPQKSEFKIDVPIYAIDSIYNVSVALPKLEKGEAFYQNFTLKDGEKVTPFDTLASI ECCCCCCCCCEEEECCEEEECCEEEEEEECCCCCCCCHHHHCCCCCCCCCCCCHHHHHHH DAVVSSEFRKQLPYIITRAILSATFKVGMQAVANYYLGFVGGLVTSLYSGVSTFADTRNT HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC SIFAHKIYLMRIKNKAFENYEVQADSIDAFSFSLKPCKRSLESPKVIDARELLSGFVTAP EEEEEEEEEEEEHHHCCCCCEEECCCCCCEEEECHHHHHCCCCCCCCCHHHHHHHHHCCC QIFCSNRHNILYVRSFKNGFVLNRLK HHHHCCCCCEEEEEECCCCCEEECCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA