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The map label for this gene is rpoE [H]

Identifier: 187935336

GI number: 187935336

Start: 3103880

End: 3104464

Strand: Reverse

Name: rpoE [H]

Synonym: CLL_A3006

Alternate gene names: 187935336

Gene position: 3104464-3103880 (Counterclockwise)

Preceding gene: 187934213

Following gene: 187932611

Centisome position: 81.69

GC content: 29.57

Gene sequence:

>585_bases
TTGGATATGCAAGACACGATAATACGTTGTAAGCTAGGAGAAAAAGAGGCATTTCAGGAACTTTTGCAAACCGTAGAAAA
GAACGCATTGGCTACTGCTTATTTTTTATCTGGAAAAAGAGGAATTGCAGAGGACATTCTTCAGGAAACTTATATGAAAT
GTTTTATGGAAATAGACAAGCTTAAAGATCCGGAAGCTTTTAAAGTATGGTTTTTTAGAATTCTTGTTCGCACAGGCTGG
AAAATGTCTAAAAAACAATCTATGCTAGTTCCTACTGATATAACATCTGAGAATGAAGCCTTGTTTTATAATGAAAAACA
AAATGAAGAAAATATAATTGATACTTATGAAACAAAACATATAGTAAAAAGTGCAATTAATAATTTAAGTGAAAATTTAA
AAACTGTTGTTATTTTATATTACTTTAATGATATGTCAATAGAAGAAATTTCAAAAGTAACTGGATGCTTTAAAGCAACA
GTAAAATCCCGTTTATTCTATGCAAGAGGTGCTTTAAAAAAGCAATTGGGTGATTGTTTTGAAAATCAAAATCATCTAGT
AGAAGTTAAATGCAAACAAGTATAG

Upstream 100 bases:

>100_bases
CAAATTCAGAAATATTTAAAAAAATAAGAAATTAACAAAACCTAAACAATATATTTATGCTCTTATATTATAGAATGCAA
AAAGAAAGGAGATGTAAAAA

Downstream 100 bases:

>100_bases
TGTAAGCTAACTATATAGATAAAGGAGTGTAGTAGAATGAATAAGAATAATAAATTAGACAGTTTAATAAAATCAGCTAT
GGATGATAGTGCTAATAACA

Product: RNA polymerase ECF-type sigma factor

Products: NA

Alternate protein names: Sigma-24 [H]

Number of amino acids: Translated: 194; Mature: 194

Protein sequence:

>194_residues
MDMQDTIIRCKLGEKEAFQELLQTVEKNALATAYFLSGKRGIAEDILQETYMKCFMEIDKLKDPEAFKVWFFRILVRTGW
KMSKKQSMLVPTDITSENEALFYNEKQNEENIIDTYETKHIVKSAINNLSENLKTVVILYYFNDMSIEEISKVTGCFKAT
VKSRLFYARGALKKQLGDCFENQNHLVEVKCKQV

Sequences:

>Translated_194_residues
MDMQDTIIRCKLGEKEAFQELLQTVEKNALATAYFLSGKRGIAEDILQETYMKCFMEIDKLKDPEAFKVWFFRILVRTGW
KMSKKQSMLVPTDITSENEALFYNEKQNEENIIDTYETKHIVKSAINNLSENLKTVVILYYFNDMSIEEISKVTGCFKAT
VKSRLFYARGALKKQLGDCFENQNHLVEVKCKQV
>Mature_194_residues
MDMQDTIIRCKLGEKEAFQELLQTVEKNALATAYFLSGKRGIAEDILQETYMKCFMEIDKLKDPEAFKVWFFRILVRTGW
KMSKKQSMLVPTDITSENEALFYNEKQNEENIIDTYETKHIVKSAINNLSENLKTVVILYYFNDMSIEEISKVTGCFKAT
VKSRLFYARGALKKQLGDCFENQNHLVEVKCKQV

Specific function: Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is involved in heat shock and oxidative stress response; it is believed to control protein processing

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family. ECF subfamily [H]

Homologues:

Organism=Escherichia coli, GI1788926, Length=176, Percent_Identity=28.9772727272727, Blast_Score=78, Evalue=3e-16,

Paralogues:

None

Copy number: <10 [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014284
- InterPro:   IPR000838
- InterPro:   IPR007627
- InterPro:   IPR013249
- InterPro:   IPR014286
- InterPro:   IPR013325
- InterPro:   IPR013324 [H]

Pfam domain/function: PF04542 Sigma70_r2; PF08281 Sigma70_r4_2 [H]

EC number: NA

Molecular weight: Translated: 22584; Mature: 22584

Theoretical pI: Translated: 7.24; Mature: 7.24

Prosite motif: PS01319 RBFA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.6 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
6.2 %Cys+Met (Translated Protein)
2.6 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
6.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDMQDTIIRCKLGEKEAFQELLQTVEKNALATAYFLSGKRGIAEDILQETYMKCFMEIDK
CCCHHHEEEEECCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH
LKDPEAFKVWFFRILVRTGWKMSKKQSMLVPTDITSENEALFYNEKQNEENIIDTYETKH
CCCCHHHHHHHHHHHHHHCCCCCCCCCEECCCCCCCCCCEEEECCCCCCCCHHHHHHHHH
IVKSAINNLSENLKTVVILYYFNDMSIEEISKVTGCFKATVKSRLFYARGALKKQLGDCF
HHHHHHHHHHHHHHEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ENQNHLVEVKCKQV
CCCCCEEEEEEECC
>Mature Secondary Structure
MDMQDTIIRCKLGEKEAFQELLQTVEKNALATAYFLSGKRGIAEDILQETYMKCFMEIDK
CCCHHHEEEEECCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH
LKDPEAFKVWFFRILVRTGWKMSKKQSMLVPTDITSENEALFYNEKQNEENIIDTYETKH
CCCCHHHHHHHHHHHHHHCCCCCCCCCEECCCCCCCCCCEEEECCCCCCCCHHHHHHHHH
IVKSAINNLSENLKTVVILYYFNDMSIEEISKVTGCFKATVKSRLFYARGALKKQLGDCF
HHHHHHHHHHHHHHEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ENQNHLVEVKCKQV
CCCCCEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]