| Definition | Clostridium botulinum B str. Eklund 17B, complete genome. |
|---|---|
| Accession | NC_010674 |
| Length | 3,800,327 |
Click here to switch to the map view.
The map label for this gene is ydiF [H]
Identifier: 187934852
GI number: 187934852
Start: 3072266
End: 3074155
Strand: Reverse
Name: ydiF [H]
Synonym: CLL_A2984
Alternate gene names: 187934852
Gene position: 3074155-3072266 (Counterclockwise)
Preceding gene: 187933860
Following gene: 187932459
Centisome position: 80.89
GC content: 24.02
Gene sequence:
>1890_bases ATGATGGAGTTAGCATTAAAAGAAGTAAAAAAATATTTCGGTGGAAATAAAATTTTAAGTAATATTACTTTTGAAATAAA GGAAGGAGAAAGAGTAGGCCTTATTGGAAATAATGGAAGTGGTAAAACCACAATTTTCAAAATTATTGCGGGAATTGAAA ATAAAGATGGTGGTTCAGTATTCATTAGAAAAAATTCAAAGATAGGATATCTAAATCAAATACCTGAATATCCTGAAGGA TTTAAAGTCATTGATGTATTAAATAGTGCATTTGAAGAATTACATCAAATAAAAAGTGAAATGGAAACTTTAGAATCTCA AATGAAAAAAACAACAGGGAAAGACTTAGAGATAATATTAAATAAATATTCTAATTTAAGTTTAGATTATGAAAATAAAG ATGGTTATAATATAGATGAAAAGTTAAGTAAAGTTTGCACTGGATTAAAGTTTGACGAAAGTATTTTAAATAAAGACTTT GCAAATTTAAGTGGTGGAGAAAAAACGGTCGTAATGTTAGGAAAAATTTTATTGCAATCTCCTAATCTACTTCTTTTAGA TGAACCATCAAATCATTTAGATATGGAGTGTATTGAATGGTTAGAAAATTATATAAAATCATATAAGGGAACAGTAGTAA TAATATCTCATGATAGATATTTTTTAGATAATTCTGTAAGCAAAATGATTGAGTTAGAAGATGGTGAAATACTACATGAG TATAATGGAAACTATTCTTATTATATTAAAGAAAAAGAAAGAATAGTAAATGAGCAATTTGAGGCCTATAAAGATCAACA GAAAAAAATTAAAGCAATGGAGAAATCTATTAAGCAGTTAAGGGAGTGGGCTATACAAGGAGATAATGAATCATTTTTTA AAAGAGCAGAAAGTATTCAAAAAAGATTGGATAAAATAAAAAGAATAGATAAACCGGTAGATAAAGCCAAAATAAACATT AATTTTGTTAAAAGCGATAGATCAGGAAACAATGTATTAGATATTAAAGATTTAGAAAAGCATTTTTATAATAAATTGAT ATTAGAAAATTTAAATTTATCAATAAAATATGGTGATAAGGTTGCTATAATAGGCAATAATGGCACTGGTAAATCAACAA TATTAAAATTAATATTAAATGAGGTTAATCTAGATAAAGGAAAAATAACGTTAGGTCATAATGTTAAAATTGGATATCTT CCACAGAATGTAAGTTTTGAAAATGAAGAATTAACGGTTTTGGAAGTATTTAGAGAAGATATTAATATTTTAGAGGGAGA AGCAAGAAATATATTAGCTAAATTTCTATTTTATGGTGAAAGTGTTTTTAAGAAAGTAAAAGGTCTTTCAGGTGGAGAAA AGAGTAGATTTAAGCTGTGTAAATTAATTCAAGATGATATAAATTTACTTATTCTTGACGAACCTACTAATCATTTAGAT ATAGATTCAAGAGAGATGCTTGAAGATTCATTAATGAATTTTGAAGGAACCATATTATTTGTATCACATGATAGATTCTT TATAAATAAAATTGGTAAGAGAATATGTGAATTAGAAAACAGAAAAGTTACTAATTATTATGGTGATTATGAATATTATA AAGAAAAGAAAAGTGAAAATAAGATAAAAAATATTAATAACAATAGAGACAAAAAATCTAAAACTAATAAAGTGAAAGAT AATAAAAGTAATATAAAGAATATGGAAAAAGAAATAAAAAATACAGAAAGAATAATTGAAGATTATGAAAAAATAATTAA TGAAATTGATAATAAAATAAATACTTATACAAGTAATTATGAAAAATTGACAGACTTATATAATGAAAGAACAAGGATAC AAAATGAATTAGATAATACATTAGAAAAATGGATGAATATGAATAGTTAA
Upstream 100 bases:
>100_bases ATATGCAATGAGCAATTAGACATTGCATATATCAATACTTTGTTGAAACATAATCTATTTAAAAAACTAAGATTATTAAA GAATGGAGTAGATGTTATAA
Downstream 100 bases:
>100_bases TTTAAAGTTTATAATGATATAATAAATCATTATAACATTATAAACTTTATTAATTTAGTATTATTAAAATATATACTGAA TTTAAAAGAATACTTTAAGG
Product: ABC transporter ATP-binding protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 629; Mature: 629
Protein sequence:
>629_residues MMELALKEVKKYFGGNKILSNITFEIKEGERVGLIGNNGSGKTTIFKIIAGIENKDGGSVFIRKNSKIGYLNQIPEYPEG FKVIDVLNSAFEELHQIKSEMETLESQMKKTTGKDLEIILNKYSNLSLDYENKDGYNIDEKLSKVCTGLKFDESILNKDF ANLSGGEKTVVMLGKILLQSPNLLLLDEPSNHLDMECIEWLENYIKSYKGTVVIISHDRYFLDNSVSKMIELEDGEILHE YNGNYSYYIKEKERIVNEQFEAYKDQQKKIKAMEKSIKQLREWAIQGDNESFFKRAESIQKRLDKIKRIDKPVDKAKINI NFVKSDRSGNNVLDIKDLEKHFYNKLILENLNLSIKYGDKVAIIGNNGTGKSTILKLILNEVNLDKGKITLGHNVKIGYL PQNVSFENEELTVLEVFREDINILEGEARNILAKFLFYGESVFKKVKGLSGGEKSRFKLCKLIQDDINLLILDEPTNHLD IDSREMLEDSLMNFEGTILFVSHDRFFINKIGKRICELENRKVTNYYGDYEYYKEKKSENKIKNINNNRDKKSKTNKVKD NKSNIKNMEKEIKNTERIIEDYEKIINEIDNKINTYTSNYEKLTDLYNERTRIQNELDNTLEKWMNMNS
Sequences:
>Translated_629_residues MMELALKEVKKYFGGNKILSNITFEIKEGERVGLIGNNGSGKTTIFKIIAGIENKDGGSVFIRKNSKIGYLNQIPEYPEG FKVIDVLNSAFEELHQIKSEMETLESQMKKTTGKDLEIILNKYSNLSLDYENKDGYNIDEKLSKVCTGLKFDESILNKDF ANLSGGEKTVVMLGKILLQSPNLLLLDEPSNHLDMECIEWLENYIKSYKGTVVIISHDRYFLDNSVSKMIELEDGEILHE YNGNYSYYIKEKERIVNEQFEAYKDQQKKIKAMEKSIKQLREWAIQGDNESFFKRAESIQKRLDKIKRIDKPVDKAKINI NFVKSDRSGNNVLDIKDLEKHFYNKLILENLNLSIKYGDKVAIIGNNGTGKSTILKLILNEVNLDKGKITLGHNVKIGYL PQNVSFENEELTVLEVFREDINILEGEARNILAKFLFYGESVFKKVKGLSGGEKSRFKLCKLIQDDINLLILDEPTNHLD IDSREMLEDSLMNFEGTILFVSHDRFFINKIGKRICELENRKVTNYYGDYEYYKEKKSENKIKNINNNRDKKSKTNKVKD NKSNIKNMEKEIKNTERIIEDYEKIINEIDNKINTYTSNYEKLTDLYNERTRIQNELDNTLEKWMNMNS >Mature_629_residues MMELALKEVKKYFGGNKILSNITFEIKEGERVGLIGNNGSGKTTIFKIIAGIENKDGGSVFIRKNSKIGYLNQIPEYPEG FKVIDVLNSAFEELHQIKSEMETLESQMKKTTGKDLEIILNKYSNLSLDYENKDGYNIDEKLSKVCTGLKFDESILNKDF ANLSGGEKTVVMLGKILLQSPNLLLLDEPSNHLDMECIEWLENYIKSYKGTVVIISHDRYFLDNSVSKMIELEDGEILHE YNGNYSYYIKEKERIVNEQFEAYKDQQKKIKAMEKSIKQLREWAIQGDNESFFKRAESIQKRLDKIKRIDKPVDKAKINI NFVKSDRSGNNVLDIKDLEKHFYNKLILENLNLSIKYGDKVAIIGNNGTGKSTILKLILNEVNLDKGKITLGHNVKIGYL PQNVSFENEELTVLEVFREDINILEGEARNILAKFLFYGESVFKKVKGLSGGEKSRFKLCKLIQDDINLLILDEPTNHLD IDSREMLEDSLMNFEGTILFVSHDRFFINKIGKRICELENRKVTNYYGDYEYYKEKKSENKIKNINNNRDKKSKTNKVKD NKSNIKNMEKEIKNTERIIEDYEKIINEIDNKINTYTSNYEKLTDLYNERTRIQNELDNTLEKWMNMNS
Specific function: Unknown
COG id: COG0488
COG function: function code R; ATPase components of ABC transporters with duplicated ATPase domains
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 2 ABC transporter domains [H]
Homologues:
Organism=Homo sapiens, GI148612853, Length=536, Percent_Identity=30.2238805970149, Blast_Score=226, Evalue=4e-59, Organism=Homo sapiens, GI27881506, Length=533, Percent_Identity=28.5178236397749, Blast_Score=205, Evalue=9e-53, Organism=Homo sapiens, GI10947137, Length=533, Percent_Identity=28.5178236397749, Blast_Score=205, Evalue=1e-52, Organism=Homo sapiens, GI10947135, Length=530, Percent_Identity=29.2452830188679, Blast_Score=197, Evalue=3e-50, Organism=Homo sapiens, GI69354671, Length=530, Percent_Identity=29.2452830188679, Blast_Score=197, Evalue=3e-50, Organism=Escherichia coli, GI1789751, Length=633, Percent_Identity=28.7519747235387, Blast_Score=294, Evalue=1e-80, Organism=Escherichia coli, GI2367384, Length=529, Percent_Identity=33.4593572778828, Blast_Score=293, Evalue=3e-80, Organism=Escherichia coli, GI1787041, Length=538, Percent_Identity=33.457249070632, Blast_Score=284, Evalue=1e-77, Organism=Escherichia coli, GI1787182, Length=630, Percent_Identity=27.3015873015873, Blast_Score=258, Evalue=8e-70, Organism=Escherichia coli, GI1788165, Length=187, Percent_Identity=28.3422459893048, Blast_Score=77, Evalue=3e-15, Organism=Escherichia coli, GI1789891, Length=227, Percent_Identity=23.3480176211454, Blast_Score=74, Evalue=3e-14, Organism=Escherichia coli, GI1788225, Length=243, Percent_Identity=27.1604938271605, Blast_Score=73, Evalue=7e-14, Organism=Escherichia coli, GI1787370, Length=233, Percent_Identity=24.8927038626609, Blast_Score=70, Evalue=4e-13, Organism=Escherichia coli, GI1787029, Length=216, Percent_Identity=26.8518518518519, Blast_Score=69, Evalue=8e-13, Organism=Escherichia coli, GI1790467, Length=242, Percent_Identity=24.7933884297521, Blast_Score=68, Evalue=2e-12, Organism=Escherichia coli, GI1786563, Length=189, Percent_Identity=26.984126984127, Blast_Score=65, Evalue=2e-11, Organism=Escherichia coli, GI1787143, Length=168, Percent_Identity=30.952380952381, Blast_Score=64, Evalue=3e-11, Organism=Escherichia coli, GI1787164, Length=215, Percent_Identity=26.5116279069767, Blast_Score=62, Evalue=8e-11, Organism=Escherichia coli, GI1786319, Length=196, Percent_Identity=27.5510204081633, Blast_Score=62, Evalue=8e-11, Organism=Caenorhabditis elegans, GI17559834, Length=535, Percent_Identity=28.5981308411215, Blast_Score=223, Evalue=2e-58, Organism=Caenorhabditis elegans, GI17555318, Length=532, Percent_Identity=27.0676691729323, Blast_Score=203, Evalue=3e-52, Organism=Caenorhabditis elegans, GI17553372, Length=548, Percent_Identity=29.3795620437956, Blast_Score=197, Evalue=1e-50, Organism=Caenorhabditis elegans, GI193202349, Length=167, Percent_Identity=30.5389221556886, Blast_Score=68, Evalue=1e-11, Organism=Caenorhabditis elegans, GI17569145, Length=227, Percent_Identity=26.8722466960352, Blast_Score=68, Evalue=1e-11, Organism=Caenorhabditis elegans, GI17541710, Length=165, Percent_Identity=30.9090909090909, Blast_Score=65, Evalue=8e-11, Organism=Saccharomyces cerevisiae, GI6320874, Length=559, Percent_Identity=30.2325581395349, Blast_Score=233, Evalue=8e-62, Organism=Saccharomyces cerevisiae, GI6321121, Length=552, Percent_Identity=29.8913043478261, Blast_Score=212, Evalue=1e-55, Organism=Saccharomyces cerevisiae, GI6325030, Length=393, Percent_Identity=24.9363867684478, Blast_Score=118, Evalue=3e-27, Organism=Saccharomyces cerevisiae, GI6324314, Length=392, Percent_Identity=25, Blast_Score=105, Evalue=2e-23, Organism=Saccharomyces cerevisiae, GI6323278, Length=391, Percent_Identity=24.2966751918159, Blast_Score=103, Evalue=1e-22, Organism=Saccharomyces cerevisiae, GI6323959, Length=183, Percent_Identity=28.9617486338798, Blast_Score=67, Evalue=7e-12, Organism=Drosophila melanogaster, GI24666836, Length=547, Percent_Identity=30.5301645338208, Blast_Score=229, Evalue=3e-60, Organism=Drosophila melanogaster, GI24642252, Length=555, Percent_Identity=28.2882882882883, Blast_Score=211, Evalue=2e-54, Organism=Drosophila melanogaster, GI18859989, Length=555, Percent_Identity=28.2882882882883, Blast_Score=211, Evalue=2e-54, Organism=Drosophila melanogaster, GI24641342, Length=547, Percent_Identity=28.7020109689214, Blast_Score=210, Evalue=2e-54, Organism=Drosophila melanogaster, GI116007328, Length=221, Percent_Identity=30.7692307692308, Blast_Score=79, Evalue=9e-15, Organism=Drosophila melanogaster, GI28574150, Length=221, Percent_Identity=30.7692307692308, Blast_Score=79, Evalue=9e-15, Organism=Drosophila melanogaster, GI45552343, Length=231, Percent_Identity=25.5411255411255, Blast_Score=70, Evalue=6e-12, Organism=Drosophila melanogaster, GI45552349, Length=231, Percent_Identity=25.5411255411255, Blast_Score=70, Evalue=6e-12, Organism=Drosophila melanogaster, GI45552345, Length=231, Percent_Identity=25.5411255411255, Blast_Score=70, Evalue=6e-12, Organism=Drosophila melanogaster, GI45552347, Length=231, Percent_Identity=25.5411255411255, Blast_Score=70, Evalue=6e-12, Organism=Drosophila melanogaster, GI45552359, Length=231, Percent_Identity=25.5411255411255, Blast_Score=70, Evalue=7e-12, Organism=Drosophila melanogaster, GI45550972, Length=231, Percent_Identity=25.5411255411255, Blast_Score=70, Evalue=7e-12, Organism=Drosophila melanogaster, GI45552363, Length=231, Percent_Identity=25.5411255411255, Blast_Score=70, Evalue=7e-12, Organism=Drosophila melanogaster, GI45552337, Length=231, Percent_Identity=25.5411255411255, Blast_Score=69, Evalue=7e-12, Organism=Drosophila melanogaster, GI45552353, Length=231, Percent_Identity=25.5411255411255, Blast_Score=69, Evalue=7e-12, Organism=Drosophila melanogaster, GI45552351, Length=231, Percent_Identity=25.5411255411255, Blast_Score=69, Evalue=7e-12, Organism=Drosophila melanogaster, GI45552361, Length=231, Percent_Identity=25.5411255411255, Blast_Score=69, Evalue=7e-12, Organism=Drosophila melanogaster, GI24583969, Length=231, Percent_Identity=25.5411255411255, Blast_Score=69, Evalue=7e-12, Organism=Drosophila melanogaster, GI45552341, Length=231, Percent_Identity=25.5411255411255, Blast_Score=69, Evalue=7e-12, Organism=Drosophila melanogaster, GI45552357, Length=231, Percent_Identity=25.5411255411255, Blast_Score=69, Evalue=7e-12, Organism=Drosophila melanogaster, GI45552335, Length=231, Percent_Identity=25.5411255411255, Blast_Score=69, Evalue=7e-12, Organism=Drosophila melanogaster, GI45552339, Length=231, Percent_Identity=25.5411255411255, Blast_Score=69, Evalue=8e-12, Organism=Drosophila melanogaster, GI45552355, Length=231, Percent_Identity=25.5411255411255, Blast_Score=69, Evalue=8e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003439 - InterPro: IPR017871 - InterPro: IPR003593 [H]
Pfam domain/function: PF00005 ABC_tran [H]
EC number: NA
Molecular weight: Translated: 73012; Mature: 73012
Theoretical pI: Translated: 6.74; Mature: 6.74
Prosite motif: PS00018 EF_HAND_1 ; PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MMELALKEVKKYFGGNKILSNITFEIKEGERVGLIGNNGSGKTTIFKIIAGIENKDGGSV CCHHHHHHHHHHHCCCCEECCEEEEEECCCEEEEEECCCCCCHHHHHHHHCCCCCCCCEE FIRKNSKIGYLNQIPEYPEGFKVIDVLNSAFEELHQIKSEMETLESQMKKTTGKDLEIIL EEEECCCCCCHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH NKYSNLSLDYENKDGYNIDEKLSKVCTGLKFDESILNKDFANLSGGEKTVVMLGKILLQS HHCCCCEEEECCCCCCCHHHHHHHHHCCCCCCHHHHHCHHHCCCCCCHHHHHHHHHHHCC PNLLLLDEPSNHLDMECIEWLENYIKSYKGTVVIISHDRYFLDNSVSKMIELEDGEILHE CCEEEEECCCCCCCHHHHHHHHHHHHHHCCEEEEEECCCCHHHHHHHHHEECCCCCEEEE YNGNYSYYIKEKERIVNEQFEAYKDQQKKIKAMEKSIKQLREWAIQGDNESFFKRAESIQ ECCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH KRLDKIKRIDKPVDKAKININFVKSDRSGNNVLDIKDLEKHFYNKLILENLNLSIKYGDK HHHHHHHHHCCCCCCEEEEEEEEECCCCCCCEECHHHHHHHHHHHHHHHCCCEEEEECCE VAIIGNNGTGKSTILKLILNEVNLDKGKITLGHNVKIGYLPQNVSFENEELTVLEVFRED EEEEECCCCCHHHHHHHHHHHCCCCCCEEEECCCEEEEEECCCCCCCCCCHHHHHHHHHH INILEGEARNILAKFLFYGESVFKKVKGLSGGEKSRFKLCKLIQDDINLLILDEPTNHLD HHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCEEEEECCCCCCC IDSREMLEDSLMNFEGTILFVSHDRFFINKIGKRICELENRKVTNYYGDYEYYKEKKSEN CCHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHCCCEEECCCCCHHHHHHHHHHH KIKNINNNRDKKSKTNKVKDNKSNIKNMEKEIKNTERIIEDYEKIINEIDNKINTYTSNY HHHCCCCCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHH EKLTDLYNERTRIQNELDNTLEKWMNMNS HHHHHHHHHHHHHHHHHHHHHHHHHCCCC >Mature Secondary Structure MMELALKEVKKYFGGNKILSNITFEIKEGERVGLIGNNGSGKTTIFKIIAGIENKDGGSV CCHHHHHHHHHHHCCCCEECCEEEEEECCCEEEEEECCCCCCHHHHHHHHCCCCCCCCEE FIRKNSKIGYLNQIPEYPEGFKVIDVLNSAFEELHQIKSEMETLESQMKKTTGKDLEIIL EEEECCCCCCHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH NKYSNLSLDYENKDGYNIDEKLSKVCTGLKFDESILNKDFANLSGGEKTVVMLGKILLQS HHCCCCEEEECCCCCCCHHHHHHHHHCCCCCCHHHHHCHHHCCCCCCHHHHHHHHHHHCC PNLLLLDEPSNHLDMECIEWLENYIKSYKGTVVIISHDRYFLDNSVSKMIELEDGEILHE CCEEEEECCCCCCCHHHHHHHHHHHHHHCCEEEEEECCCCHHHHHHHHHEECCCCCEEEE YNGNYSYYIKEKERIVNEQFEAYKDQQKKIKAMEKSIKQLREWAIQGDNESFFKRAESIQ ECCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH KRLDKIKRIDKPVDKAKININFVKSDRSGNNVLDIKDLEKHFYNKLILENLNLSIKYGDK HHHHHHHHHCCCCCCEEEEEEEEECCCCCCCEECHHHHHHHHHHHHHHHCCCEEEEECCE VAIIGNNGTGKSTILKLILNEVNLDKGKITLGHNVKIGYLPQNVSFENEELTVLEVFRED EEEEECCCCCHHHHHHHHHHHCCCCCCEEEECCCEEEEEECCCCCCCCCCHHHHHHHHHH INILEGEARNILAKFLFYGESVFKKVKGLSGGEKSRFKLCKLIQDDINLLILDEPTNHLD HHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCEEEEECCCCCCC IDSREMLEDSLMNFEGTILFVSHDRFFINKIGKRICELENRKVTNYYGDYEYYKEKKSEN CCHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHCCCEEECCCCCHHHHHHHHHHH KIKNINNNRDKKSKTNKVKDNKSNIKNMEKEIKNTERIIEDYEKIINEIDNKINTYTSNY HHHCCCCCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHH EKLTDLYNERTRIQNELDNTLEKWMNMNS HHHHHHHHHHHHHHHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9202461; 9384377 [H]