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The map label for this gene is ybcS [C]

Identifier: 187934460

GI number: 187934460

Start: 3030441

End: 3031223

Strand: Reverse

Name: ybcS [C]

Synonym: CLL_A2949

Alternate gene names: 187934460

Gene position: 3031223-3030441 (Counterclockwise)

Preceding gene: 187935218

Following gene: 187934758

Centisome position: 79.76

GC content: 31.67

Gene sequence:

>783_bases
ATGACACAATGGAAATGGTGTGTAGAGGGCCAAGATGGAAAGGTTATAAAAGGCTGGTATGAAGAAAGTGGGAATTGGTA
TTATTTAAATGATGAGGGAATAATGCAGACTGGATGGGCAAAAGATAAAGATGGATTGTGGTATTATATGAATTCTAATG
GGATAATGCAGGTTGGCTGGATTGAGTTAAAAGGAATTTGGTATTATCTTGAGGAATCTAGTAATGGCTATAAAGGAAAG
TGTTATATCGACTGTACTGAAACTATTAATGGAAAGCAATATACTTTTGATAAAGATGGTCACATGTTAGAAAATTCTCT
AGTATCTGAGGATTGTATTAATTTTATAAAGTCTTGGGAAGGTTTTTTTGAAAAACCATATTATGATGCTGTTGGAGTTT
TGACACTAGGTTATGGAATGACTGGTGATGAAATAAAAGGATTATCAAGTATAACTGAAAGTAAAGCAAGCGACATGTTA
AAGGATTTAATTAATAATAAATATGCAAAAGCAATAAAAAAAGACTTGGATTCTAAAGGGGTGAATTTAAAGCAATGTGA
ATTTGATGCATTAATTTCCTTTGCATATAATTGTGGAATTGTAGGATTGTTAGGATCTACACTATACAAAAATATAGTTG
CTGGAATAAGAAATCCAAATACTATTACTGATAATTTTCAAGCTTGGAGTAATGGAGGCGGAAAAAGAATAGAAGGTTTA
TATCGTAGACGTACAAAAGAGGCAAACATGTTTATTTTAGGGGATTATACAGGTAATGTATAA

Upstream 100 bases:

>100_bases
TAAGTAAAAATATATAAATCATAAAATTTTAATATATTAAAATCCTTTAATGAAAATATTGATATGAGATAATTCTATTT
TTAACTAAGGAGGATTAAAT

Downstream 100 bases:

>100_bases
TAAACTTTGGAAATGTTTTAGGTTACACCATTCTATTAAAAAATAATAAGATTAAGCAAAAAAATTTAAGGGCAATTATC
ACATTGAGTTTTATATTAAA

Product: phage lysozyme

Products: Hydrolysed Peptidoglycan; Chitodextrin [C]

Alternate protein names: Phage Related Lysozyme; Phage-Related Lysozyme; Phage Lysozyme; Surface Protein PspC; Glycoside Hydrolase Family; Surface Protein PspA; Collagenolytic Protease; Pneumococcal Surface Protein A; Cell Wall Hydrolase/Autolysin; Integrin-Like Repeat-Containing Lysozyme; Glycoside Hydrolase Family Protein; Gifsy-2 Prophage Lysozyme; SCP-Like Extracellular; Endo-Beta-N-Acetylglucosaminidase; Surface Protective Antigen SpaB; Protective Antigen SpaA-Like Protein; Glycoside Hydrolase Family 3 Protein; Dipeptidase; Surface Protein A; Glycosyl Hydrolase Family; Glycoside Hydrolase

Number of amino acids: Translated: 260; Mature: 259

Protein sequence:

>260_residues
MTQWKWCVEGQDGKVIKGWYEESGNWYYLNDEGIMQTGWAKDKDGLWYYMNSNGIMQVGWIELKGIWYYLEESSNGYKGK
CYIDCTETINGKQYTFDKDGHMLENSLVSEDCINFIKSWEGFFEKPYYDAVGVLTLGYGMTGDEIKGLSSITESKASDML
KDLINNKYAKAIKKDLDSKGVNLKQCEFDALISFAYNCGIVGLLGSTLYKNIVAGIRNPNTITDNFQAWSNGGGKRIEGL
YRRRTKEANMFILGDYTGNV

Sequences:

>Translated_260_residues
MTQWKWCVEGQDGKVIKGWYEESGNWYYLNDEGIMQTGWAKDKDGLWYYMNSNGIMQVGWIELKGIWYYLEESSNGYKGK
CYIDCTETINGKQYTFDKDGHMLENSLVSEDCINFIKSWEGFFEKPYYDAVGVLTLGYGMTGDEIKGLSSITESKASDML
KDLINNKYAKAIKKDLDSKGVNLKQCEFDALISFAYNCGIVGLLGSTLYKNIVAGIRNPNTITDNFQAWSNGGGKRIEGL
YRRRTKEANMFILGDYTGNV
>Mature_259_residues
TQWKWCVEGQDGKVIKGWYEESGNWYYLNDEGIMQTGWAKDKDGLWYYMNSNGIMQVGWIELKGIWYYLEESSNGYKGKC
YIDCTETINGKQYTFDKDGHMLENSLVSEDCINFIKSWEGFFEKPYYDAVGVLTLGYGMTGDEIKGLSSITESKASDMLK
DLINNKYAKAIKKDLDSKGVNLKQCEFDALISFAYNCGIVGLLGSTLYKNIVAGIRNPNTITDNFQAWSNGGGKRIEGLY
RRRTKEANMFILGDYTGNV

Specific function: Essential For Lysis Of Bacterial Cell Wall, By Showing Cell Wall Hydrolyzing Activity (By Similarity). [C]

COG id: COG3772

COG function: function code R; Phage-related lysozyme (muraminidase)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: 3.2.1.17 [C]

Molecular weight: Translated: 29573; Mature: 29441

Theoretical pI: Translated: 4.89; Mature: 4.89

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
5.4 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTQWKWCVEGQDGKVIKGWYEESGNWYYLNDEGIMQTGWAKDKDGLWYYMNSNGIMQVGW
CCCCEEEEECCCCCEEEEEEECCCCEEEECCCCEEECCCCCCCCCEEEEECCCCEEEEEE
IELKGIWYYLEESSNGYKGKCYIDCTETINGKQYTFDKDGHMLENSLVSEDCINFIKSWE
EEEEEEEEEEEECCCCCCEEEEEEECCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHH
GFFEKPYYDAVGVLTLGYGMTGDEIKGLSSITESKASDMLKDLINNKYAKAIKKDLDSKG
HHHCCCCHHHHHHEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCC
VNLKQCEFDALISFAYNCGIVGLLGSTLYKNIVAGIRNPNTITDNFQAWSNGGGKRIEGL
CCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHCCCCCHHHHHH
YRRRTKEANMFILGDYTGNV
HHHHCCCCCEEEEECCCCCC
>Mature Secondary Structure 
TQWKWCVEGQDGKVIKGWYEESGNWYYLNDEGIMQTGWAKDKDGLWYYMNSNGIMQVGW
CCCEEEEECCCCCEEEEEEECCCCEEEECCCCEEECCCCCCCCCEEEEECCCCEEEEEE
IELKGIWYYLEESSNGYKGKCYIDCTETINGKQYTFDKDGHMLENSLVSEDCINFIKSWE
EEEEEEEEEEEECCCCCCEEEEEEECCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHH
GFFEKPYYDAVGVLTLGYGMTGDEIKGLSSITESKASDMLKDLINNKYAKAIKKDLDSKG
HHHCCCCHHHHHHEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCC
VNLKQCEFDALISFAYNCGIVGLLGSTLYKNIVAGIRNPNTITDNFQAWSNGGGKRIEGL
CCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHCCCCCHHHHHH
YRRRTKEANMFILGDYTGNV
HHHHCCCCCEEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: Peptidoglycan (N-acetylmuraminic acid and N-acetyl-D-glucosamine Residues); Chitodextrin (N-acetyl-D-glucosamine residues) [C]

Specific reaction: Hydrolysis of beta-linkage between N-acetylmuraminic acid and N-acetyl- D-glucosamine residues in peptidoglycan and between N-acetyl-D-glucosamine residues in chitodextrin [C]

General reaction: O-Glycosyl bond hydrolysis; glycosyltransfer to saccharides other alcohols and H2O [C]

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA