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The map label for this gene is ydeC [H]

Identifier: 187934421

GI number: 187934421

Start: 3743102

End: 3744019

Strand: Reverse

Name: ydeC [H]

Synonym: CLL_A3535

Alternate gene names: 187934421

Gene position: 3744019-3743102 (Counterclockwise)

Preceding gene: 187933193

Following gene: 187935251

Centisome position: 98.52

GC content: 25.16

Gene sequence:

>918_bases
ATGAAGAAAAATCAACTTAAGGAAATTAAAAAGCATGGTACGGCATATTTTCCGTGTGCATTTTACTATACAGAAAGTGA
TTCAGAAAATTTAATAGTGAAACACCATTGGCATGATCAATTAGAATTAATTCACATGAAAAAAGGTGAATTTCAAGTAG
AAATAGATATGGATAAGCATGTTGTACATGAAGAAACTATTTGTTTTATCAATAGTGAGGAGCTTCATTTTATTAAATCA
AATCACCCGTGCAAAGAAAGTGCTATTGTTTTTGATTTAAAAATGCTTAGCTTTGATATGTTTGATTCTATACAAGGCTC
ATTAATTCAACCATTATTAAATGGTGAATTAAAGATGCCGCATTTTATTTTTAAGAAAGATAAACATGGAGAAGAAATTT
TAAAAGAGTATTCTGAAATTTTAGAAGCCTATAAGATTAGTGGACAGATATCACAAAATCCAGAAGGTAATATTACAGAA
AAATTATCCTCACAAATAAAAATAAAAGCATCTTTATTAAAAATTTTAGCTATACTATATGAAAATAATTTGCTTATAAA
AGAGAATAATAAAAATAAAGATTATAGAGTAGAGTATATTAAAACAGCTATTTCTTATATTCAAAATAATTATTCGGAAA
AAATACATATAAAAGATTTATCTAAGCAAATTAATATGAATGAACAATACTTTTGCCGTTTTTTTAAAAGGATGATTGGT
AAAACTCCTATGGAATATGTTAATGAATATAGAATAAAGAAGGCCAAAGAACTATTAAGGGAAACTAATAGACAAGTTAT
GGATATATGTTTAGAGTGTGGATTTCATAACATGGGGAATTTTATTAAAGTATTTAAAAAGCATACAGGAATAAATCCTA
TGAAATACAGAAAAAATTTTATTAATAAAAAGTCATAA

Upstream 100 bases:

>100_bases
TATTTAATGTTATAGTAATCTAAATTTAAAGTATTTTTTATATGGTAAAATTATATAAAAAGTAATGGGTTAATTTATAT
TTTAAGTTAGAGGTTAAATT

Downstream 100 bases:

>100_bases
AAACGTAATTTTAAATCACTAATACGTAAGAAAACTTAAATTTAAGACTGTATTATATAACTATAGTAAAACAACGAGAG
TCTTATGAGGAGGTGAATTT

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 305; Mature: 305

Protein sequence:

>305_residues
MKKNQLKEIKKHGTAYFPCAFYYTESDSENLIVKHHWHDQLELIHMKKGEFQVEIDMDKHVVHEETICFINSEELHFIKS
NHPCKESAIVFDLKMLSFDMFDSIQGSLIQPLLNGELKMPHFIFKKDKHGEEILKEYSEILEAYKISGQISQNPEGNITE
KLSSQIKIKASLLKILAILYENNLLIKENNKNKDYRVEYIKTAISYIQNNYSEKIHIKDLSKQINMNEQYFCRFFKRMIG
KTPMEYVNEYRIKKAKELLRETNRQVMDICLECGFHNMGNFIKVFKKHTGINPMKYRKNFINKKS

Sequences:

>Translated_305_residues
MKKNQLKEIKKHGTAYFPCAFYYTESDSENLIVKHHWHDQLELIHMKKGEFQVEIDMDKHVVHEETICFINSEELHFIKS
NHPCKESAIVFDLKMLSFDMFDSIQGSLIQPLLNGELKMPHFIFKKDKHGEEILKEYSEILEAYKISGQISQNPEGNITE
KLSSQIKIKASLLKILAILYENNLLIKENNKNKDYRVEYIKTAISYIQNNYSEKIHIKDLSKQINMNEQYFCRFFKRMIG
KTPMEYVNEYRIKKAKELLRETNRQVMDICLECGFHNMGNFIKVFKKHTGINPMKYRKNFINKKS
>Mature_305_residues
MKKNQLKEIKKHGTAYFPCAFYYTESDSENLIVKHHWHDQLELIHMKKGEFQVEIDMDKHVVHEETICFINSEELHFIKS
NHPCKESAIVFDLKMLSFDMFDSIQGSLIQPLLNGELKMPHFIFKKDKHGEEILKEYSEILEAYKISGQISQNPEGNITE
KLSSQIKIKASLLKILAILYENNLLIKENNKNKDYRVEYIKTAISYIQNNYSEKIHIKDLSKQINMNEQYFCRFFKRMIG
KTPMEYVNEYRIKKAKELLRETNRQVMDICLECGFHNMGNFIKVFKKHTGINPMKYRKNFINKKS

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787987, Length=290, Percent_Identity=28.9655172413793, Blast_Score=92, Evalue=4e-20,
Organism=Escherichia coli, GI1790559, Length=281, Percent_Identity=22.4199288256228, Blast_Score=79, Evalue=3e-16,
Organism=Escherichia coli, GI1788030, Length=72, Percent_Identity=45.8333333333333, Blast_Score=66, Evalue=2e-12,
Organism=Escherichia coli, GI1790339, Length=114, Percent_Identity=24.5614035087719, Blast_Score=64, Evalue=9e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR003313
- InterPro:   IPR018062
- InterPro:   IPR020449
- InterPro:   IPR018060
- InterPro:   IPR014710 [H]

Pfam domain/function: PF02311 AraC_binding; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 36220; Mature: 36220

Theoretical pI: Translated: 9.15; Mature: 9.15

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
5.9 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
5.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKNQLKEIKKHGTAYFPCAFYYTESDSENLIVKHHWHDQLELIHMKKGEFQVEIDMDKH
CCHHHHHHHHHCCCEEEEEEEEEECCCCCCEEEEECCCCCEEEEEEECCCEEEEEECCHH
VVHEETICFINSEELHFIKSNHPCKESAIVFDLKMLSFDMFDSIQGSLIQPLLNGELKMP
HHHHCEEEEECCCCEEEECCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHCCCCCCC
HFIFKKDKHGEEILKEYSEILEAYKISGQISQNPEGNITEKLSSQIKIKASLLKILAILY
HHEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
ENNLLIKENNKNKDYRVEYIKTAISYIQNNYSEKIHIKDLSKQINMNEQYFCRFFKRMIG
CCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEHHHHHHHCCCCHHHHHHHHHHHHC
KTPMEYVNEYRIKKAKELLRETNRQVMDICLECGFHNMGNFIKVFKKHTGINPMKYRKNF
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCHHHHHHHH
INKKS
CCCCC
>Mature Secondary Structure
MKKNQLKEIKKHGTAYFPCAFYYTESDSENLIVKHHWHDQLELIHMKKGEFQVEIDMDKH
CCHHHHHHHHHCCCEEEEEEEEEECCCCCCEEEEECCCCCEEEEEEECCCEEEEEECCHH
VVHEETICFINSEELHFIKSNHPCKESAIVFDLKMLSFDMFDSIQGSLIQPLLNGELKMP
HHHHCEEEEECCCCEEEECCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHCCCCCCC
HFIFKKDKHGEEILKEYSEILEAYKISGQISQNPEGNITEKLSSQIKIKASLLKILAILY
HHEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
ENNLLIKENNKNKDYRVEYIKTAISYIQNNYSEKIHIKDLSKQINMNEQYFCRFFKRMIG
CCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEHHHHHHHCCCCHHHHHHHHHHHHC
KTPMEYVNEYRIKKAKELLRETNRQVMDICLECGFHNMGNFIKVFKKHTGINPMKYRKNF
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCHHHHHHHH
INKKS
CCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]