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The map label for this gene is ypsC [H]

Identifier: 187934404

GI number: 187934404

Start: 2515443

End: 2516603

Strand: Reverse

Name: ypsC [H]

Synonym: CLL_A2430

Alternate gene names: 187934404

Gene position: 2516603-2515443 (Counterclockwise)

Preceding gene: 187935598

Following gene: 187932919

Centisome position: 66.22

GC content: 28.94

Gene sequence:

>1161_bases
ATGTATAATTTAATTGCAACAAGTACTTTTGGTATAGAAAGTATAACAGCTAAAGAACTAAGAGCGCTTGGTTATGAAGA
CTTAGAAATTGAAAATGGAAAAGTAACTTTTGAAGGAGATGAAATGGATATAGCTATAGCTAATGTCCATTTGAGAACTG
CGGATAGAGTATTAATTAAAATGGCTGAATTTGAAGCAACATCTTTTGAAGAACTTTTCCAAGGAACTAAGAATGTAAAA
TGGCATGAAATAATACCTAAAGATGGAATTATGCATGTTGTAGGAAAATCTGTAAAATCAACACTACATAGTGTGCCAGA
TTGCCAATCTATAGTAAAAAAAGCTGTAATTGATAGTATGAGTGAACATTATGGCATTAACCAATTTAGTGAAAGTGGTT
CTACATATAAAATAGAAGTTGCTATTTTAAAAGATAAAGTAACATTAACAATAGATACTACTGGTCCTGGTTTACATAAA
AGGGGATATAGAGAACTAGCAGGAATAGCACCATTAAAAGAAACATTAGCAGCATCAATGCTTTTACTTTCAAGATGGAA
TGATAACTTTGAACTTGTAGATCCATTTTGTGGATCAGGAACTATACTTATAGAAGCTGCTATGATAGCATTAAATATAG
CACCAGGATGTAATAGAAACTTCGTGGCAGAAGAGTGGTCTGATGATATAAGAAACACATTTGCTATGGTTAAAGATGGA
GCTAAAAAAGCAGTTAAAGATAAAGAAATAAATTTAATAGGATATGATATAGATTATAGGGTTTTAAAAGTTGCTATGGA
TAATGCTGAAAAAGCAGGAGTTTCTAAGTATATAAAATTTCAAAAGAGAGATTTTATGGATTTTTCAAGCTCTAAAAAGC
ATGGATTTATGATATCAAATCCACCATACGGTGAAAGAATAGGCGAAAAAGAAACATTAGAACCACTTTATAAGTACATG
GGCAAAATGAAGAAAAAACTTAATGAATGGGATTTTAATATTTTAACTTCTATTGAAGGATTTGAAAAATTATTAGGAGT
AAAATCTACTAAAAATAGAAAGTTATATAATGGAACAATTAGATGTTATTATTATCAATATTTTGATAATGTAAAAATTA
AAAATCCAGGAGATACATTAATAAATGAATTAATGGATTAA

Upstream 100 bases:

>100_bases
TATAAAGGTTATGTTAAATGAAATTGATGGAGAAGATTCTGTAAAGATATATGATTCTATTAATTAGTAGAATATAAGAA
AGTTATAAAAGGAGTAATAT

Downstream 100 bases:

>100_bases
ACATATACTTTAAATAAATGCTATGTTTTAGTAAAATATTGATATATTCATAAGCAAAGTGGACGGAGCAATTGAACTTA
GGAATACTAAAATGAGTATA

Product: methyltransferase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 386; Mature: 386

Protein sequence:

>386_residues
MYNLIATSTFGIESITAKELRALGYEDLEIENGKVTFEGDEMDIAIANVHLRTADRVLIKMAEFEATSFEELFQGTKNVK
WHEIIPKDGIMHVVGKSVKSTLHSVPDCQSIVKKAVIDSMSEHYGINQFSESGSTYKIEVAILKDKVTLTIDTTGPGLHK
RGYRELAGIAPLKETLAASMLLLSRWNDNFELVDPFCGSGTILIEAAMIALNIAPGCNRNFVAEEWSDDIRNTFAMVKDG
AKKAVKDKEINLIGYDIDYRVLKVAMDNAEKAGVSKYIKFQKRDFMDFSSSKKHGFMISNPPYGERIGEKETLEPLYKYM
GKMKKKLNEWDFNILTSIEGFEKLLGVKSTKNRKLYNGTIRCYYYQYFDNVKIKNPGDTLINELMD

Sequences:

>Translated_386_residues
MYNLIATSTFGIESITAKELRALGYEDLEIENGKVTFEGDEMDIAIANVHLRTADRVLIKMAEFEATSFEELFQGTKNVK
WHEIIPKDGIMHVVGKSVKSTLHSVPDCQSIVKKAVIDSMSEHYGINQFSESGSTYKIEVAILKDKVTLTIDTTGPGLHK
RGYRELAGIAPLKETLAASMLLLSRWNDNFELVDPFCGSGTILIEAAMIALNIAPGCNRNFVAEEWSDDIRNTFAMVKDG
AKKAVKDKEINLIGYDIDYRVLKVAMDNAEKAGVSKYIKFQKRDFMDFSSSKKHGFMISNPPYGERIGEKETLEPLYKYM
GKMKKKLNEWDFNILTSIEGFEKLLGVKSTKNRKLYNGTIRCYYYQYFDNVKIKNPGDTLINELMD
>Mature_386_residues
MYNLIATSTFGIESITAKELRALGYEDLEIENGKVTFEGDEMDIAIANVHLRTADRVLIKMAEFEATSFEELFQGTKNVK
WHEIIPKDGIMHVVGKSVKSTLHSVPDCQSIVKKAVIDSMSEHYGINQFSESGSTYKIEVAILKDKVTLTIDTTGPGLHK
RGYRELAGIAPLKETLAASMLLLSRWNDNFELVDPFCGSGTILIEAAMIALNIAPGCNRNFVAEEWSDDIRNTFAMVKDG
AKKAVKDKEINLIGYDIDYRVLKVAMDNAEKAGVSKYIKFQKRDFMDFSSSKKHGFMISNPPYGERIGEKETLEPLYKYM
GKMKKKLNEWDFNILTSIEGFEKLLGVKSTKNRKLYNGTIRCYYYQYFDNVKIKNPGDTLINELMD

Specific function: Unknown

COG id: COG0116

COG function: function code L; Predicted N6-adenine-specific DNA methylase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 THUMP domain [H]

Homologues:

Organism=Escherichia coli, GI1787181, Length=377, Percent_Identity=29.7082228116711, Blast_Score=179, Evalue=2e-46,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002052
- InterPro:   IPR000241
- InterPro:   IPR004114 [H]

Pfam domain/function: PF02926 THUMP; PF01170 UPF0020 [H]

EC number: NA

Molecular weight: Translated: 43655; Mature: 43655

Theoretical pI: Translated: 6.64; Mature: 6.64

Prosite motif: PS00092 N6_MTASE ; PS01261 UPF0020

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYNLIATSTFGIESITAKELRALGYEDLEIENGKVTFEGDEMDIAIANVHLRTADRVLIK
CCCEEEECCCCCHHHHHHHHHHCCCCCEEEECCEEEEECCCEEEEEEEEEEEHHHHHHHH
MAEFEATSFEELFQGTKNVKWHEIIPKDGIMHVVGKSVKSTLHSVPDCQSIVKKAVIDSM
HHHCCCCCHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
SEHYGINQFSESGSTYKIEVAILKDKVTLTIDTTGPGLHKRGYRELAGIAPLKETLAASM
HHHCCCCHHHCCCCEEEEEEEEEECEEEEEEECCCCCHHHHHHHHHHCCCHHHHHHHHHH
LLLSRWNDNFELVDPFCGSGTILIEAAMIALNIAPGCNRNFVAEEWSDDIRNTFAMVKDG
HHHHHCCCCCEEECCCCCCCHHHEEEEEHEEECCCCCCCCCCHHHHHHHHHHHHHHHHHH
AKKAVKDKEINLIGYDIDYRVLKVAMDNAEKAGVSKYIKFQKRDFMDFSSSKKHGFMISN
HHHHHCCCCEEEEEECCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCCCCEEECC
PPYGERIGEKETLEPLYKYMGKMKKKLNEWDFNILTSIEGFEKLLGVKSTKNRKLYNGTI
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCEEECCEE
RCYYYQYFDNVKIKNPGDTLINELMD
EEEEEEEECCCEEECCHHHHHHHHCC
>Mature Secondary Structure
MYNLIATSTFGIESITAKELRALGYEDLEIENGKVTFEGDEMDIAIANVHLRTADRVLIK
CCCEEEECCCCCHHHHHHHHHHCCCCCEEEECCEEEEECCCEEEEEEEEEEEHHHHHHHH
MAEFEATSFEELFQGTKNVKWHEIIPKDGIMHVVGKSVKSTLHSVPDCQSIVKKAVIDSM
HHHCCCCCHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
SEHYGINQFSESGSTYKIEVAILKDKVTLTIDTTGPGLHKRGYRELAGIAPLKETLAASM
HHHCCCCHHHCCCCEEEEEEEEEECEEEEEEECCCCCHHHHHHHHHHCCCHHHHHHHHHH
LLLSRWNDNFELVDPFCGSGTILIEAAMIALNIAPGCNRNFVAEEWSDDIRNTFAMVKDG
HHHHHCCCCCEEECCCCCCCHHHEEEEEHEEECCCCCCCCCCHHHHHHHHHHHHHHHHHH
AKKAVKDKEINLIGYDIDYRVLKVAMDNAEKAGVSKYIKFQKRDFMDFSSSKKHGFMISN
HHHHHCCCCEEEEEECCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCCCCEEECC
PPYGERIGEKETLEPLYKYMGKMKKKLNEWDFNILTSIEGFEKLLGVKSTKNRKLYNGTI
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCEEECCEE
RCYYYQYFDNVKIKNPGDTLINELMD
EEEEEEEECCCEEECCHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8760912; 9384377; 2423526 [H]