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The map label for this gene is licD [H]

Identifier: 187932495

GI number: 187932495

Start: 3311782

End: 3312660

Strand: Reverse

Name: licD [H]

Synonym: CLL_A3188

Alternate gene names: 187932495

Gene position: 3312660-3311782 (Counterclockwise)

Preceding gene: 187934080

Following gene: 187932491

Centisome position: 87.17

GC content: 25.94

Gene sequence:

>879_bases
ATGAGTAATATAGATGATATATCAAAAGAAAATTATCAAAATAAGAATAATAATGAAGAATATGAAAATTTAAGTTTAAA
AGATGCTCAAATGTTGATGGTTAGTATTTTAAAGGATGTTGATAAGATATGCGAAAAACATGGATTAAAATATTTTTTAG
ATGCAGGAACTTTATTGGGGGCAGTTAGGCATAAGGGATTTATTCCATGGGATGATGATATGGATATTGGAATGCTTAGA
GAAGACTATGAAAAGTTTCTAAAAATAGCTAAGGAAGAGTTACCTAGCCATTTATTTTTGCAAACATTTGAAAGTGATAA
ATATTATGATATTTACCAAGTACCTTGTAAGATTAGATATAATGGAACTGTACTTATTGAAAAAGCAATTGGAGAAAATG
AAAAAATGCATAATGGTGTATATATAGATGTATTCCCTTATGATAGTTTACCAAAGCATAATTTTATTTATAAAATTCAA
AGATCAATAAGTGGAAATATATTAAAAAGTTTCGTTAGATTGAGGGATATCCCTGAAAAATTAACTTTCAAAAATAAAAT
TACATTTTCTTTTTATAAAATAATAACAAAAATATTTACAGCTAAAAGAAGAAGAAAGTTTTTTGGAGCTTTAGTTAAAT
GGAACGATAAAAATTCGAAGTACATGGGATATGGTGTTGATACTGCATGGAGTGAATATGTTTATAGAAAAGATGATTAT
TTTGATTTGATTAAATTAGAATTTGAAGGTGAAAAATTTTATGGACCTAAAAATGCAGATGCAATTTTAACTGGGCTTTA
TGGTGATTATATGACATTACCTAAAGAAGAAGAACGAGTATGGCATGCAAAAGAAATAAAAAAACTTAAGAATATTTAA

Upstream 100 bases:

>100_bases
TCCTGCACTGTGTTTGGAAAGGGTGCATGGCTAAAAAAATCGATGGTTTTAAAGTCGCCTTGGCGATTTTGTTTTTAAGT
ACATCGAGAAGGTGGCAAAA

Downstream 100 bases:

>100_bases
GTGAAAGTATTTAAATTTGCAATTTGAATTATACTATTATTATAAAAGTTTATTAGTGAATTTTAGAGTAAATTAGTATA
ATACAAATATTGCATATAGT

Product: LicD family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 292; Mature: 291

Protein sequence:

>292_residues
MSNIDDISKENYQNKNNNEEYENLSLKDAQMLMVSILKDVDKICEKHGLKYFLDAGTLLGAVRHKGFIPWDDDMDIGMLR
EDYEKFLKIAKEELPSHLFLQTFESDKYYDIYQVPCKIRYNGTVLIEKAIGENEKMHNGVYIDVFPYDSLPKHNFIYKIQ
RSISGNILKSFVRLRDIPEKLTFKNKITFSFYKIITKIFTAKRRRKFFGALVKWNDKNSKYMGYGVDTAWSEYVYRKDDY
FDLIKLEFEGEKFYGPKNADAILTGLYGDYMTLPKEEERVWHAKEIKKLKNI

Sequences:

>Translated_292_residues
MSNIDDISKENYQNKNNNEEYENLSLKDAQMLMVSILKDVDKICEKHGLKYFLDAGTLLGAVRHKGFIPWDDDMDIGMLR
EDYEKFLKIAKEELPSHLFLQTFESDKYYDIYQVPCKIRYNGTVLIEKAIGENEKMHNGVYIDVFPYDSLPKHNFIYKIQ
RSISGNILKSFVRLRDIPEKLTFKNKITFSFYKIITKIFTAKRRRKFFGALVKWNDKNSKYMGYGVDTAWSEYVYRKDDY
FDLIKLEFEGEKFYGPKNADAILTGLYGDYMTLPKEEERVWHAKEIKKLKNI
>Mature_291_residues
SNIDDISKENYQNKNNNEEYENLSLKDAQMLMVSILKDVDKICEKHGLKYFLDAGTLLGAVRHKGFIPWDDDMDIGMLRE
DYEKFLKIAKEELPSHLFLQTFESDKYYDIYQVPCKIRYNGTVLIEKAIGENEKMHNGVYIDVFPYDSLPKHNFIYKIQR
SISGNILKSFVRLRDIPEKLTFKNKITFSFYKIITKIFTAKRRRKFFGALVKWNDKNSKYMGYGVDTAWSEYVYRKDDYF
DLIKLEFEGEKFYGPKNADAILTGLYGDYMTLPKEEERVWHAKEIKKLKNI

Specific function: Transfers phosphorylcholine (ChoP) from choline diphosphonucleoside to the lipopolysaccharide (LPS) [H]

COG id: COG3475

COG function: function code M; LPS biosynthesis protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the licD transferase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007074 [H]

Pfam domain/function: PF04991 LicD [H]

EC number: NA

Molecular weight: Translated: 34598; Mature: 34467

Theoretical pI: Translated: 8.75; Mature: 8.75

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSNIDDISKENYQNKNNNEEYENLSLKDAQMLMVSILKDVDKICEKHGLKYFLDAGTLLG
CCCCHHHHHHHCCCCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEHHHHHHH
AVRHKGFIPWDDDMDIGMLREDYEKFLKIAKEELPSHLFLQTFESDKYYDIYQVPCKIRY
HHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCEEEEECCEEEEE
NGTVLIEKAIGENEKMHNGVYIDVFPYDSLPKHNFIYKIQRSISGNILKSFVRLRDIPEK
CCEEEEEECCCCCCCHHCCEEEEEECCCCCCCCCHHHHHHHHHCHHHHHHHHHHHCCCHH
LTFKNKITFSFYKIITKIFTAKRRRKFFGALVKWNDKNSKYMGYGVDTAWSEYVYRKDDY
HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCEEECCCCHHHHHHHHCCCCC
FDLIKLEFEGEKFYGPKNADAILTGLYGDYMTLPKEEERVWHAKEIKKLKNI
EEEEEEEECCCEECCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
SNIDDISKENYQNKNNNEEYENLSLKDAQMLMVSILKDVDKICEKHGLKYFLDAGTLLG
CCCHHHHHHHCCCCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEHHHHHHH
AVRHKGFIPWDDDMDIGMLREDYEKFLKIAKEELPSHLFLQTFESDKYYDIYQVPCKIRY
HHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCEEEEECCEEEEE
NGTVLIEKAIGENEKMHNGVYIDVFPYDSLPKHNFIYKIQRSISGNILKSFVRLRDIPEK
CCEEEEEECCCCCCCHHCCEEEEEECCCCCCCCCHHHHHHHHHCHHHHHHHHHHHCCCHH
LTFKNKITFSFYKIITKIFTAKRRRKFFGALVKWNDKNSKYMGYGVDTAWSEYVYRKDDY
HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCEEECCCCHHHHHHHHCCCCC
FDLIKLEFEGEKFYGPKNADAILTGLYGDYMTLPKEEERVWHAKEIKKLKNI
EEEEEEEECCCEECCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2479481; 7542800; 10632893 [H]