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The map label for this gene is ybcL [H]

Identifier: 187930678

GI number: 187930678

Start: 3784043

End: 3785362

Strand: Reverse

Name: ybcL [H]

Synonym: Rpic_3614

Alternate gene names: 187930678

Gene position: 3785362-3784043 (Counterclockwise)

Preceding gene: 187930679

Following gene: 187930672

Centisome position: 96.01

GC content: 67.73

Gene sequence:

>1320_bases
ATGCCTCTACTTGATTCCTCGCGCGAGCGCCGGTTGCTCTGGCTACTCGCGCTCACGCAGTTCACCGTCATCATGGATTT
CATGGTGATGATGCCGCTTGGTCCCCAGATCATGCATACGTTTGGCATCGGTCCGGCGGCGTTCGCCACGGCCGTGTCGG
TGTATTCGCTGTGCTCGGGTGCCTCCGGCCTGCTGGCCGCCACCTATGTCGACCGCTTCGACCGGCGCCGTCTGCTGCTG
ACCGTCTACGGCCTCTTCACGCTGGCCAACCTGGCCTGCGCGCTGTCGGGCAGTTACAGCATGCTGCTGTTCGCACGGGC
GTTTGCGGGCGTCACGGGCGGTGTGCTCGGGTCGATCATCATGGCCGTGCTGTCGGACGTGATTCCGCCCGCGCGGCGCG
GCGCGGCTACCGGCGTAGTGATGTCGTCGTTTGCGCTGGCGGCCATGGCAGGCGTGCCTGCGGGCATTGCCATTGGCGCG
CATTTCGGCTGGTCGGCGCCGTTCTTCCTGCTCACGGCGCTCACGGTGCTGATCTGGCTGGGCGCGCGGCGGACCATTCC
GCCGCTGGCCGAACATCTGGCAGGCAATCGCAGCCAGACGTTGGGCGAGGTGCTCTCGGGCCTGTGGCGGTTGCTCACCA
ACCCGCGCCACCTGCGTGCGTTCGTGCTGACTTTCGTGATGATGGGCTCGCACATGCTGGTGATTCCGTTCATCTCGCCG
GTGCTGGTGGCCAACCACGGGGTGCCGCCGCAAAACCTGTCGTGGCTGTATGTGGCGGGCGGCGCGGCATCGTTTTTCAG
CTCACGCGCCGTGGGCAAGCTGGCCGACCGCTACGGCCGCCGCCGCGTGTTCGTGGGCGCCGCACTGCTGGCGTTCATCC
CGGTGCTGGTGATGACGCATCTGCCCGACTGGCCCTTCATCGGCATGCTGCTGTTCTTCCCGTTCTTCATGGTGATCCTC
TCCAGCCGCATGGTGCCGATGCAGGCGCTGATGACCACGGTGCCGGCCCCGCAGGTGCGCGGCGCGTTCCTCTCGGCCAA
CAGCGCGGTGATGTCGGTGGGCACTGGCGTGGGGGCGTGGCTTGGCGGGCTGCTGCTGTCCGGTGGCGCCAGCGGCCGCA
TCGAGGGCTATGGCCTCAACGGCTGGCTGGCCGTGGCGGCAGGGTTGTTCTGCGTGTTCTGGGTGAGCCAGGTGAAGGGA
TCGGATGCGCAGGGCGACCCGTCGCTGGCTGCATCACCTGCAGCACCGGCATCCGCTGCACCCGCCGGCGCGTCCGGTCC
GCAAACGGTGCCGCAAGCACCGCGCGCGGAAAAGGCCTGA

Upstream 100 bases:

>100_bases
CTATCGTAAGATATGTTTTTCGACATAACACGGCGCGCCGGCCTACTGCCTTCTGCTGGCAGCCGCGTGCGCCGCCTCCT
CTCTTTCTTCGTTCGCCCTC

Downstream 100 bases:

>100_bases
GCGGTTATTCGGCTTCCAGCACCGTCTTCAGCTTCACGAGGTCCCGCTGCACCCATTCGGCATCGGCGTCGAACTGCGCG
TCGTCCATGTTCGGTTGCTG

Product: major facilitator superfamily protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 439; Mature: 438

Protein sequence:

>439_residues
MPLLDSSRERRLLWLLALTQFTVIMDFMVMMPLGPQIMHTFGIGPAAFATAVSVYSLCSGASGLLAATYVDRFDRRRLLL
TVYGLFTLANLACALSGSYSMLLFARAFAGVTGGVLGSIIMAVLSDVIPPARRGAATGVVMSSFALAAMAGVPAGIAIGA
HFGWSAPFFLLTALTVLIWLGARRTIPPLAEHLAGNRSQTLGEVLSGLWRLLTNPRHLRAFVLTFVMMGSHMLVIPFISP
VLVANHGVPPQNLSWLYVAGGAASFFSSRAVGKLADRYGRRRVFVGAALLAFIPVLVMTHLPDWPFIGMLLFFPFFMVIL
SSRMVPMQALMTTVPAPQVRGAFLSANSAVMSVGTGVGAWLGGLLLSGGASGRIEGYGLNGWLAVAAGLFCVFWVSQVKG
SDAQGDPSLAASPAAPASAAPAGASGPQTVPQAPRAEKA

Sequences:

>Translated_439_residues
MPLLDSSRERRLLWLLALTQFTVIMDFMVMMPLGPQIMHTFGIGPAAFATAVSVYSLCSGASGLLAATYVDRFDRRRLLL
TVYGLFTLANLACALSGSYSMLLFARAFAGVTGGVLGSIIMAVLSDVIPPARRGAATGVVMSSFALAAMAGVPAGIAIGA
HFGWSAPFFLLTALTVLIWLGARRTIPPLAEHLAGNRSQTLGEVLSGLWRLLTNPRHLRAFVLTFVMMGSHMLVIPFISP
VLVANHGVPPQNLSWLYVAGGAASFFSSRAVGKLADRYGRRRVFVGAALLAFIPVLVMTHLPDWPFIGMLLFFPFFMVIL
SSRMVPMQALMTTVPAPQVRGAFLSANSAVMSVGTGVGAWLGGLLLSGGASGRIEGYGLNGWLAVAAGLFCVFWVSQVKG
SDAQGDPSLAASPAAPASAAPAGASGPQTVPQAPRAEKA
>Mature_438_residues
PLLDSSRERRLLWLLALTQFTVIMDFMVMMPLGPQIMHTFGIGPAAFATAVSVYSLCSGASGLLAATYVDRFDRRRLLLT
VYGLFTLANLACALSGSYSMLLFARAFAGVTGGVLGSIIMAVLSDVIPPARRGAATGVVMSSFALAAMAGVPAGIAIGAH
FGWSAPFFLLTALTVLIWLGARRTIPPLAEHLAGNRSQTLGEVLSGLWRLLTNPRHLRAFVLTFVMMGSHMLVIPFISPV
LVANHGVPPQNLSWLYVAGGAASFFSSRAVGKLADRYGRRRVFVGAALLAFIPVLVMTHLPDWPFIGMLLFFPFFMVILS
SRMVPMQALMTTVPAPQVRGAFLSANSAVMSVGTGVGAWLGGLLLSGGASGRIEGYGLNGWLAVAAGLFCVFWVSQVKGS
DAQGDPSLAASPAAPASAAPAGASGPQTVPQAPRAEKA

Specific function: May Be Involved In Either The Transport Or Processing Of Arabinose Polymers. [C]

COG id: COG2814

COG function: function code G; Arabinose efflux permease

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the major facilitator superfamily [H]

Homologues:

Organism=Escherichia coli, GI1786595, Length=366, Percent_Identity=23.224043715847, Blast_Score=69, Evalue=7e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020846
- InterPro:   IPR011701
- InterPro:   IPR016196 [H]

Pfam domain/function: PF07690 MFS_1 [H]

EC number: NA

Molecular weight: Translated: 46096; Mature: 45965

Theoretical pI: Translated: 11.24; Mature: 11.24

Prosite motif: PS50850 MFS ; PS00216 SUGAR_TRANSPORT_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
4.6 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
4.3 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPLLDSSRERRLLWLLALTQFTVIMDFMVMMPLGPQIMHTFGIGPAAFATAVSVYSLCSG
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHCC
ASGLLAATYVDRFDRRRLLLTVYGLFTLANLACALSGSYSMLLFARAFAGVTGGVLGSII
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH
MAVLSDVIPPARRGAATGVVMSSFALAAMAGVPAGIAIGAHFGWSAPFFLLTALTVLIWL
HHHHHHHCCCHHCCCHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCHHHHHHHHHHHHHH
GARRTIPPLAEHLAGNRSQTLGEVLSGLWRLLTNPRHLRAFVLTFVMMGSHMLVIPFISP
CCCCCCCHHHHHHCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCEEEHHHHHH
VLVANHGVPPQNLSWLYVAGGAASFFSSRAVGKLADRYGRRRVFVGAALLAFIPVLVMTH
HHHHCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
LPDWPFIGMLLFFPFFMVILSSRMVPMQALMTTVPAPQVRGAFLSANSAVMSVGTGVGAW
CCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHCCHHHCCCHHHHHHCCCHHHH
LGGLLLSGGASGRIEGYGLNGWLAVAAGLFCVFWVSQVKGSDAQGDPSLAASPAAPASAA
HHHHHHCCCCCCCEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC
PAGASGPQTVPQAPRAEKA
CCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
PLLDSSRERRLLWLLALTQFTVIMDFMVMMPLGPQIMHTFGIGPAAFATAVSVYSLCSG
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHCC
ASGLLAATYVDRFDRRRLLLTVYGLFTLANLACALSGSYSMLLFARAFAGVTGGVLGSII
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH
MAVLSDVIPPARRGAATGVVMSSFALAAMAGVPAGIAIGAHFGWSAPFFLLTALTVLIWL
HHHHHHHCCCHHCCCHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCHHHHHHHHHHHHHH
GARRTIPPLAEHLAGNRSQTLGEVLSGLWRLLTNPRHLRAFVLTFVMMGSHMLVIPFISP
CCCCCCCHHHHHHCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCEEEHHHHHH
VLVANHGVPPQNLSWLYVAGGAASFFSSRAVGKLADRYGRRRVFVGAALLAFIPVLVMTH
HHHHCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
LPDWPFIGMLLFFPFFMVILSSRMVPMQALMTTVPAPQVRGAFLSANSAVMSVGTGVGAW
CCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHCCHHHCCCHHHHHHCCCHHHH
LGGLLLSGGASGRIEGYGLNGWLAVAAGLFCVFWVSQVKGSDAQGDPSLAASPAAPASAA
HHHHHHCCCCCCCEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC
PAGASGPQTVPQAPRAEKA
CCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]