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The map label for this gene is sspB [H]

Identifier: 187930269

GI number: 187930269

Start: 3351254

End: 3351751

Strand: Reverse

Name: sspB [H]

Synonym: Rpic_3202

Alternate gene names: 187930269

Gene position: 3351751-3351254 (Counterclockwise)

Preceding gene: 187930270

Following gene: 187930268

Centisome position: 85.01

GC content: 61.24

Gene sequence:

>498_bases
ATGTCGGAAACTTCCACCAAGCCCTATCTGATCCGTGCAATCTACGAATGGTGCACGGACAACGGCTTCACGCCGTACAT
CGCTGTCTTCGTCGACAACAGTACCAACGTGCCGCGCGAGTTCGTCAAGAACGACGAGATCGTGCTGAACGTGAGCTTTG
ACGCGACCAGCCAGCTCGACATGGGCAACGAGTGGATCACGTTCCACGCACGCTTCTCGGGCGTGTCTCGCAAGATCGAG
GTGCCGATCGAAAACGTGCTTGCTGTGTATGCGCGCGAGAACGGGCAGGGTATGGCATTCCCGGTGGAACGCAGCACGCC
GACGGTGCAGGCCGCGACCGAACGCGAGAACAATCCGCCGCCCAAGCTGGCCGCAGTGGACTCCGAATCCATGCCTGCGC
CGGTCCCTGCCGAAGCCGAAACTGGCCCGGAAGACGACCCGACACCGCCGAATGTGCCGCGCATCGGTGGCAAGCCTGCG
CTAAAGGTCGTCAAGTAA

Upstream 100 bases:

>100_bases
ACGCCGTCGGAAAAGGTCATGCGCCGCTGATTGCCGCCGGGTCGCGCCGCGCTCGGGTCGAGCCTGCGCGCGGCCGCGCC
CAACGGTCACTGATTTCATC

Downstream 100 bases:

>100_bases
CGCGTGTTAGGTTAGAATCGCGTTTCTTTGCCGGCTTAGCTCATCTGGTAGAGCAGTTGATTTGTAATCATCAGGTGGCG
GGTTCGAGTCCTGCAGCCGG

Product: ClpXP protease specificity-enhancing factor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 165; Mature: 164

Protein sequence:

>165_residues
MSETSTKPYLIRAIYEWCTDNGFTPYIAVFVDNSTNVPREFVKNDEIVLNVSFDATSQLDMGNEWITFHARFSGVSRKIE
VPIENVLAVYARENGQGMAFPVERSTPTVQAATERENNPPPKLAAVDSESMPAPVPAEAETGPEDDPTPPNVPRIGGKPA
LKVVK

Sequences:

>Translated_165_residues
MSETSTKPYLIRAIYEWCTDNGFTPYIAVFVDNSTNVPREFVKNDEIVLNVSFDATSQLDMGNEWITFHARFSGVSRKIE
VPIENVLAVYARENGQGMAFPVERSTPTVQAATERENNPPPKLAAVDSESMPAPVPAEAETGPEDDPTPPNVPRIGGKPA
LKVVK
>Mature_164_residues
SETSTKPYLIRAIYEWCTDNGFTPYIAVFVDNSTNVPREFVKNDEIVLNVSFDATSQLDMGNEWITFHARFSGVSRKIEV
PIENVLAVYARENGQGMAFPVERSTPTVQAATERENNPPPKLAAVDSESMPAPVPAEAETGPEDDPTPPNVPRIGGKPAL
KVVK

Specific function: Seems to act in concert with sspA in the regulation of several proteins during exponential and stationary-phase growth. The exact function of sspB is not yet known [H]

COG id: COG2969

COG function: function code R; Stringent starvation protein B

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1789623, Length=98, Percent_Identity=44.8979591836735, Blast_Score=97, Evalue=6e-22,

Paralogues:

None

Copy number: 297 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007481 [H]

Pfam domain/function: PF04386 SspB [H]

EC number: NA

Molecular weight: Translated: 18106; Mature: 17975

Theoretical pI: Translated: 4.41; Mature: 4.41

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSETSTKPYLIRAIYEWCTDNGFTPYIAVFVDNSTNVPREFVKNDEIVLNVSFDATSQLD
CCCCCCCCHHHHHHHHHHCCCCCCCEEEEEEECCCCCCHHHHCCCCEEEEEECCCCCCCC
MGNEWITFHARFSGVSRKIEVPIENVLAVYARENGQGMAFPVERSTPTVQAATERENNPP
CCCEEEEEEEEECCCCEEEECCHHHEEEEEECCCCCEEEEEECCCCCCEEEECCCCCCCC
PKLAAVDSESMPAPVPAEAETGPEDDPTPPNVPRIGGKPALKVVK
CCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECC
>Mature Secondary Structure 
SETSTKPYLIRAIYEWCTDNGFTPYIAVFVDNSTNVPREFVKNDEIVLNVSFDATSQLD
CCCCCCCHHHHHHHHHHCCCCCCCEEEEEEECCCCCCHHHHCCCCEEEEEECCCCCCCC
MGNEWITFHARFSGVSRKIEVPIENVLAVYARENGQGMAFPVERSTPTVQAATERENNPP
CCCEEEEEEEEECCCCEEEECCHHHEEEEEECCCCCEEEEEECCCCCCEEEECCCCCCCC
PKLAAVDSESMPAPVPAEAETGPEDDPTPPNVPRIGGKPALKVVK
CCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]