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The map label for this gene is rci [H]

Identifier: 187930268

GI number: 187930268

Start: 3349996

End: 3351051

Strand: Reverse

Name: rci [H]

Synonym: Rpic_3201

Alternate gene names: 187930268

Gene position: 3351051-3349996 (Counterclockwise)

Preceding gene: 187930269

Following gene: 187930266

Centisome position: 85.0

GC content: 59.85

Gene sequence:

>1056_bases
ATGGCGACCATCGTCAAGACGCCTTCCGGCACGTGGAAGGCGGTCATTCGCAAGCTCGGCTGGCCGACCACGGCCAAGAC
CTTCCGCACCAAACGCGACGCGGAGGATTGGGCGCGCCGGACTGAGGATGAGATGGTCCGAGGTGTGTATCTGTCCCGCG
CACCATCTGAGAAGCTGACCGTCGCTGGCGCGTTGAAGCGCTATATGGAGGAGGTTTCGGTCACGAAGAAGCCGACCACT
CAGCGCAGCGAGCGCTTTACGGCTCAACACTTGGAGGCCTTCTTCGGGAAGTATTCGATGGCGGCCGTTAGCGCAGACCT
GGTCGCCAAGTACCGCGATGCACGCTTGGCGGCGGGCAAGTCGAACAACACGGTTCGCATTGAACTCGCGATGCTGGGTC
ATTTGTTTCGAACGGCGATTCAAGAGTGGAGCATCGGCTTGACGTTCAATCCGGTTGCCAACATCCGCAAGCCTAGCCCG
GGGGCCGGGCGCGATCGTCGTCTTAGTCTGGACGAGCAGGCGCGTTTGTTCGCGGCTGTGTCAGCTCACAGCAATCCGAT
GCTGGGTTGGATCGTGAGCTTGGCTGTGGAGACTGGTATGCGCTCATCGGAGATCGCAACGCTACGCCGTTCACAGGTCG
ATCTGAACCGTCGAGTTGTGACCTTGCGGGATACGAAAAATGGCTCCGCGCGAGTAGTACCGCTTACGCGTGCTGCCGCT
GATGTCTTGCAACTGGCCCTCGGCAATCCTATTCGTCCATTGGACTCAGACCTCGTGTTCTTTGGGGAGCCGGGGCGCGA
CGGGAAACGACGGCCCTATGTGTTCCAGAAGCTGTGGGCGAGCATTGTTCGTGATATGGGCTTGGCCGATCTTCATTTCC
ACGACCTTCGCCATGAAGCCGTGAGCCGTCTCGTTGAGGCGGGCCTGAGCGATCAGGAGGTAGCCGCCATAAGCGGGCAC
AAGTCCATGCAGATGCTCAAGCGCTACACGCACCTACGGGCTGAGGACTTGGTGGAGAAGCTTGACGCAGTCATTCTTGG
CTGTGGTTCTGCCTAG

Upstream 100 bases:

>100_bases
CCAATAAAATCAAGGGGTTACGTGAATTTCACGTGACCCCTTGTGCTTTCTGGGCGTTGAAAAGTACATTTTCGGTACAG
TCAGCTCTCAGAACAGGTAC

Downstream 100 bases:

>100_bases
CTGCGGCTCGGCTCCTATTCGCAAGCTCGACATGCCTGGCCATCCGCAGGTCATTCCATTTCTTCCAGTTCTCAATCGAC
GATTGGTCCGTCGGATCGAC

Product: integrase family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 351; Mature: 350

Protein sequence:

>351_residues
MATIVKTPSGTWKAVIRKLGWPTTAKTFRTKRDAEDWARRTEDEMVRGVYLSRAPSEKLTVAGALKRYMEEVSVTKKPTT
QRSERFTAQHLEAFFGKYSMAAVSADLVAKYRDARLAAGKSNNTVRIELAMLGHLFRTAIQEWSIGLTFNPVANIRKPSP
GAGRDRRLSLDEQARLFAAVSAHSNPMLGWIVSLAVETGMRSSEIATLRRSQVDLNRRVVTLRDTKNGSARVVPLTRAAA
DVLQLALGNPIRPLDSDLVFFGEPGRDGKRRPYVFQKLWASIVRDMGLADLHFHDLRHEAVSRLVEAGLSDQEVAAISGH
KSMQMLKRYTHLRAEDLVEKLDAVILGCGSA

Sequences:

>Translated_351_residues
MATIVKTPSGTWKAVIRKLGWPTTAKTFRTKRDAEDWARRTEDEMVRGVYLSRAPSEKLTVAGALKRYMEEVSVTKKPTT
QRSERFTAQHLEAFFGKYSMAAVSADLVAKYRDARLAAGKSNNTVRIELAMLGHLFRTAIQEWSIGLTFNPVANIRKPSP
GAGRDRRLSLDEQARLFAAVSAHSNPMLGWIVSLAVETGMRSSEIATLRRSQVDLNRRVVTLRDTKNGSARVVPLTRAAA
DVLQLALGNPIRPLDSDLVFFGEPGRDGKRRPYVFQKLWASIVRDMGLADLHFHDLRHEAVSRLVEAGLSDQEVAAISGH
KSMQMLKRYTHLRAEDLVEKLDAVILGCGSA
>Mature_350_residues
ATIVKTPSGTWKAVIRKLGWPTTAKTFRTKRDAEDWARRTEDEMVRGVYLSRAPSEKLTVAGALKRYMEEVSVTKKPTTQ
RSERFTAQHLEAFFGKYSMAAVSADLVAKYRDARLAAGKSNNTVRIELAMLGHLFRTAIQEWSIGLTFNPVANIRKPSPG
AGRDRRLSLDEQARLFAAVSAHSNPMLGWIVSLAVETGMRSSEIATLRRSQVDLNRRVVTLRDTKNGSARVVPLTRAAAD
VLQLALGNPIRPLDSDLVFFGEPGRDGKRRPYVFQKLWASIVRDMGLADLHFHDLRHEAVSRLVEAGLSDQEVAAISGHK
SMQMLKRYTHLRAEDLVEKLDAVILGCGSA

Specific function: Shufflon-specific DNA recombinase [H]

COG id: COG0582

COG function: function code L; Integrase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family [H]

Homologues:

Organism=Escherichia coli, GI1786748, Length=239, Percent_Identity=30.5439330543933, Blast_Score=82, Evalue=6e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104 [H]

Pfam domain/function: PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 39050; Mature: 38919

Theoretical pI: Translated: 10.79; Mature: 10.79

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MATIVKTPSGTWKAVIRKLGWPTTAKTFRTKRDAEDWARRTEDEMVRGVYLSRAPSEKLT
CCEEEECCCCHHHHHHHHHCCCCCHHHHHHHCCHHHHHHCCHHHHHHHHHHCCCCCHHHH
VAGALKRYMEEVSVTKKPTTQRSERFTAQHLEAFFGKYSMAAVSADLVAKYRDARLAAGK
HHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCC
SNNTVRIELAMLGHLFRTAIQEWSIGLTFNPVANIRKPSPGAGRDRRLSLDEQARLFAAV
CCCEEEEEHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH
SAHSNPMLGWIVSLAVETGMRSSEIATLRRSQVDLNRRVVTLRDTKNGSARVVPLTRAAA
HCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCEEEEEEECCCCCEEEEEHHHHHH
DVLQLALGNPIRPLDSDLVFFGEPGRDGKRRPYVFQKLWASIVRDMGLADLHFHDLRHEA
HHHHHHHCCCCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHH
VSRLVEAGLSDQEVAAISGHKSMQMLKRYTHLRAEDLVEKLDAVILGCGSA
HHHHHHCCCCCCHHHHHCCHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure 
ATIVKTPSGTWKAVIRKLGWPTTAKTFRTKRDAEDWARRTEDEMVRGVYLSRAPSEKLT
CEEEECCCCHHHHHHHHHCCCCCHHHHHHHCCHHHHHHCCHHHHHHHHHHCCCCCHHHH
VAGALKRYMEEVSVTKKPTTQRSERFTAQHLEAFFGKYSMAAVSADLVAKYRDARLAAGK
HHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCC
SNNTVRIELAMLGHLFRTAIQEWSIGLTFNPVANIRKPSPGAGRDRRLSLDEQARLFAAV
CCCEEEEEHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH
SAHSNPMLGWIVSLAVETGMRSSEIATLRRSQVDLNRRVVTLRDTKNGSARVVPLTRAAA
HCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCEEEEEEECCCCCEEEEEHHHHHH
DVLQLALGNPIRPLDSDLVFFGEPGRDGKRRPYVFQKLWASIVRDMGLADLHFHDLRHEA
HHHHHHHCCCCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHH
VSRLVEAGLSDQEVAAISGHKSMQMLKRYTHLRAEDLVEKLDAVILGCGSA
HHHHHHCCCCCCHHHHHCCHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 3065610; 3029698 [H]