| Definition | Ralstonia pickettii 12J chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_010682 |
| Length | 3,942,557 |
Click here to switch to the map view.
The map label for this gene is xseA [H]
Identifier: 187929873
GI number: 187929873
Start: 2913094
End: 2914503
Strand: Reverse
Name: xseA [H]
Synonym: Rpic_2804
Alternate gene names: 187929873
Gene position: 2914503-2913094 (Counterclockwise)
Preceding gene: 187929881
Following gene: 187929872
Centisome position: 73.92
GC content: 68.3
Gene sequence:
>1410_bases ATGGATGCCACTGCACCCACGGCCACATCCGCGCCGGAGGTGTCGGCTGCACCTGATGCCGCGTCAGCACCGAACCGGGG CGGGCAGGAGGTGCTCTCCGTCAGCGATGTCAATCGCCGCATTGCGGGGCTGCTTGAACGCAACTTTCCGCTGGGCTGGG TGCGCGGCGAGATCTCGAACTTCACGCGCGCGGCCAGCGGCCATTGGTATTTCTCGCTCAAAGATGCAGCCGCGCAGATC CGCTGCGTGATGTTCAAGGGCCGCAACCAGTACGCCGATTTCACCCCGCGCGAAGGCGAGGCCGTGGAGGTTCGCGCGCT GGTCACGCTGTATGAAGCGCGCGGCGAACTGCAATTGAGCGTTGAAGCCATCCGCCGGGCAGGCCTGGGCAATCTGTACG AGGCTTTCCTGCGGCTGAAGGCCGCGCTGGAGGCGCAAGGCCTGTTCGACGTCGACCGCAAGCGGCCGCTGCCACGGCAT CCGCGCGCGATCGGCGTGGTGACGTCACTGCAGGCGGCGGCCTTGCGCGACGTGCTGACCACGCTGCGCCGGCGCGCGCC GCATGTGCCGGTGGTGGTGTATCCCGTGCCGGTGCAGGGTGCCGGTGCGTCGGAGCGTATCGCTGCCATGCTGGAACGGG TCAATGCCCGGGCAGAGGTCGACGTTGTCATCCTGTGCCGGGGCGGAGGCAGCATTGAAGACCTGTGGGCCTTCAATGAA GAACCGGTGGCCCGTGCGGTGGCCGCATCCGAAATTCCCATCGTGGCAGGTGTCGGGCATGAAACAGATGTGACTATCGT CGACTTTGTGGCCGATGTGCGCGCACCCACCCCGACTGCTGCGGCCGAACTCGTCAGCCCCGATCGTGCCCGCATGCTGC GCGATGTGGGCCGCGACTGGGATGCGCTGTCCGCCCAGTTCCGCCGCCAGCTCGATCGCCGCGCTCAGACCGTCGATTGG CTCGCGCGCCGCCTGCGCAGCCCGCAGACCCAGATGCGCGAACGCCGCACGCAGCTCGCCCACCTGGAGGGCCGCCTGCG CTTTGCCCTGACGGGCCGCGTGCAGCGCGCGGAACATCTGCAGCGTCTGCTGACGATGCGTCTGGCGGCAGCCCGCCCCG ACGCCACGCGAGAGCGCACTCGGCTGGACCAAGCCGAAGCAACGCTGGCACGCGTCATGCGACACACGCTGTCTCGCGCC CAAGAACGCCTGGCACGTCAGCACACCGGCCTGGAACTGCTGGCGCCGCAGCGCACGCTGGAGCGCGGCTATGCGGTGCT GCTCGACGCCAAGGGCCATGCCATACGCGATCCGCACGCACTGCATGCCCGGGCACGGATCGAGGCGCGACTGGCGCAGG GTACGGCCGACATCGAAATCGCCTGCGTGCAACCGAAGCTCGAACTGTGA
Upstream 100 bases:
>100_bases GCCTCCCCTATTCAAGGTAGATGTCGCCCCAAAGCCTCATTTTTTTGCGCTCCTCGCACCACTTATGACCCCGCCACCGT CTTCCCGCCGCCCGTTTTGG
Downstream 100 bases:
>100_bases CCGGCGCATGACCTTATAGCGGAAATGATCGCGATTCCGCACGCGTTTAGCGGTTATTCCGTCTATTTAGCCCGCGGTTT GCGCCGGTTTTGCAAGTCTC
Product: exodeoxyribonuclease VII large subunit
Products: NA
Alternate protein names: Exodeoxyribonuclease VII large subunit; Exonuclease VII large subunit [H]
Number of amino acids: Translated: 469; Mature: 469
Protein sequence:
>469_residues MDATAPTATSAPEVSAAPDAASAPNRGGQEVLSVSDVNRRIAGLLERNFPLGWVRGEISNFTRAASGHWYFSLKDAAAQI RCVMFKGRNQYADFTPREGEAVEVRALVTLYEARGELQLSVEAIRRAGLGNLYEAFLRLKAALEAQGLFDVDRKRPLPRH PRAIGVVTSLQAAALRDVLTTLRRRAPHVPVVVYPVPVQGAGASERIAAMLERVNARAEVDVVILCRGGGSIEDLWAFNE EPVARAVAASEIPIVAGVGHETDVTIVDFVADVRAPTPTAAAELVSPDRARMLRDVGRDWDALSAQFRRQLDRRAQTVDW LARRLRSPQTQMRERRTQLAHLEGRLRFALTGRVQRAEHLQRLLTMRLAAARPDATRERTRLDQAEATLARVMRHTLSRA QERLARQHTGLELLAPQRTLERGYAVLLDAKGHAIRDPHALHARARIEARLAQGTADIEIACVQPKLEL
Sequences:
>Translated_469_residues MDATAPTATSAPEVSAAPDAASAPNRGGQEVLSVSDVNRRIAGLLERNFPLGWVRGEISNFTRAASGHWYFSLKDAAAQI RCVMFKGRNQYADFTPREGEAVEVRALVTLYEARGELQLSVEAIRRAGLGNLYEAFLRLKAALEAQGLFDVDRKRPLPRH PRAIGVVTSLQAAALRDVLTTLRRRAPHVPVVVYPVPVQGAGASERIAAMLERVNARAEVDVVILCRGGGSIEDLWAFNE EPVARAVAASEIPIVAGVGHETDVTIVDFVADVRAPTPTAAAELVSPDRARMLRDVGRDWDALSAQFRRQLDRRAQTVDW LARRLRSPQTQMRERRTQLAHLEGRLRFALTGRVQRAEHLQRLLTMRLAAARPDATRERTRLDQAEATLARVMRHTLSRA QERLARQHTGLELLAPQRTLERGYAVLLDAKGHAIRDPHALHARARIEARLAQGTADIEIACVQPKLEL >Mature_469_residues MDATAPTATSAPEVSAAPDAASAPNRGGQEVLSVSDVNRRIAGLLERNFPLGWVRGEISNFTRAASGHWYFSLKDAAAQI RCVMFKGRNQYADFTPREGEAVEVRALVTLYEARGELQLSVEAIRRAGLGNLYEAFLRLKAALEAQGLFDVDRKRPLPRH PRAIGVVTSLQAAALRDVLTTLRRRAPHVPVVVYPVPVQGAGASERIAAMLERVNARAEVDVVILCRGGGSIEDLWAFNE EPVARAVAASEIPIVAGVGHETDVTIVDFVADVRAPTPTAAAELVSPDRARMLRDVGRDWDALSAQFRRQLDRRAQTVDW LARRLRSPQTQMRERRTQLAHLEGRLRFALTGRVQRAEHLQRLLTMRLAAARPDATRERTRLDQAEATLARVMRHTLSRA QERLARQHTGLELLAPQRTLERGYAVLLDAKGHAIRDPHALHARARIEARLAQGTADIEIACVQPKLEL
Specific function: Bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides [H]
COG id: COG1570
COG function: function code L; Exonuclease VII, large subunit
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the xseA family [H]
Homologues:
Organism=Escherichia coli, GI1788856, Length=439, Percent_Identity=43.7357630979499, Blast_Score=347, Evalue=7e-97,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003753 - InterPro: IPR020579 - InterPro: IPR004365 [H]
Pfam domain/function: PF02601 Exonuc_VII_L; PF01336 tRNA_anti [H]
EC number: =3.1.11.6 [H]
Molecular weight: Translated: 51838; Mature: 51838
Theoretical pI: Translated: 10.77; Mature: 10.77
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 2.1 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 2.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDATAPTATSAPEVSAAPDAASAPNRGGQEVLSVSDVNRRIAGLLERNFPLGWVRGEISN CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEHHHHHHH FTRAASGHWYFSLKDAAAQIRCVMFKGRNQYADFTPREGEAVEVRALVTLYEARGELQLS HHHHCCCCEEEEECCHHCEEEEEEEECCCCCCCCCCCCCCEEEHHHHHHHHHCCCCEEEE VEAIRRAGLGNLYEAFLRLKAALEAQGLFDVDRKRPLPRHPRAIGVVTSLQAAALRDVLT HHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCHHCCCCCCCCCHHHHHHHHHHHHHHHHHH TLRRRAPHVPVVVYPVPVQGAGASERIAAMLERVNARAEVDVVILCRGGGSIEDLWAFNE HHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHCCCCCEEEEEEECCCCCHHHHHCCCC EPVARAVAASEIPIVAGVGHETDVTIVDFVADVRAPTPTAAAELVSPDRARMLRDVGRDW CHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHCCCCCCHHHHHHCCCHHHHHHHHHCCCH DALSAQFRRQLDRRAQTVDWLARRLRSPQTQMRERRTQLAHLEGRLRFALTGRVQRAEHL HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHH QRLLTMRLAAARPDATRERTRLDQAEATLARVMRHTLSRAQERLARQHTGLELLAPQRTL HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCHHHH ERGYAVLLDAKGHAIRDPHALHARARIEARLAQGTADIEIACVQPKLEL CCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCC >Mature Secondary Structure MDATAPTATSAPEVSAAPDAASAPNRGGQEVLSVSDVNRRIAGLLERNFPLGWVRGEISN CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEHHHHHHH FTRAASGHWYFSLKDAAAQIRCVMFKGRNQYADFTPREGEAVEVRALVTLYEARGELQLS HHHHCCCCEEEEECCHHCEEEEEEEECCCCCCCCCCCCCCEEEHHHHHHHHHCCCCEEEE VEAIRRAGLGNLYEAFLRLKAALEAQGLFDVDRKRPLPRHPRAIGVVTSLQAAALRDVLT HHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCHHCCCCCCCCCHHHHHHHHHHHHHHHHHH TLRRRAPHVPVVVYPVPVQGAGASERIAAMLERVNARAEVDVVILCRGGGSIEDLWAFNE HHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHCCCCCEEEEEEECCCCCHHHHHCCCC EPVARAVAASEIPIVAGVGHETDVTIVDFVADVRAPTPTAAAELVSPDRARMLRDVGRDW CHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHCCCCCCHHHHHHCCCHHHHHHHHHCCCH DALSAQFRRQLDRRAQTVDWLARRLRSPQTQMRERRTQLAHLEGRLRFALTGRVQRAEHL HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHH QRLLTMRLAAARPDATRERTRLDQAEATLARVMRHTLSRAQERLARQHTGLELLAPQRTL HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCHHHH ERGYAVLLDAKGHAIRDPHALHARARIEARLAQGTADIEIACVQPKLEL CCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 11823852 [H]