Click here to switch to the map view.

The map label for this gene is sodB [H]

Identifier: 187929872

GI number: 187929872

Start: 2912368

End: 2913069

Strand: Reverse

Name: sodB [H]

Synonym: Rpic_2803

Alternate gene names: 187929872

Gene position: 2913069-2912368 (Counterclockwise)

Preceding gene: 187929873

Following gene: 187929869

Centisome position: 73.89

GC content: 59.97

Gene sequence:

>702_bases
ATGATCGCGATTCCGCACGCGTTTAGCGGTTATTCCGTCTATTTAGCCCGCGGTTTGCGCCGGTTTTGCAAGTCTCCTAC
AATCGTCGCTCCCAACCTGTACAACCCACAGAAGGCAAGAACAATGGAACACACGCTCCCCCCGCTGCCGTACGCCCAAG
ACGCTCTGGCGCCGCACATCTCCAAGGAAACGCTGGAGTTCCACTACGGCAAGCACCACCAGACCTACGTCACGAACCTG
AACAACCTGATCAAGGGCACCGAGTTCGAGAACCTGAGCCTCGAAGACATCGTCAAGAAGTCCTCGGGCGGTGTGTTCAA
CAACGCCGCACAGGTCTGGAACCACACGTTCTACTGGAACGGCCTGAAGCCGCAAGGCGGCGGCGCTCCGACCGGCGCGC
TGGCTGACGCCATCAACGCCAAGTGGGGCAGCTTCGACAAGTTCAAGGAAGAGTTCACCAAGACGGCTATCGGCACGTTC
GGTTCGGGCTGGGCCTGGCTGGTGAAGAAGGCCGACGGCTCGCTGGATCTGGTGTCGACCTCCAACGCCGCCACGCCGCT
GACGACCGACGCGAAGCCGCTGCTGACCTGCGATGTGTGGGAACACGCGTACTACATCGACTACCGTAACGCCCGTCCGA
AGTACGTCGAGGCGTTCTGGAACCTGGTCAACTGGGACTTCGTTGCCAAGAACTTCGCCTAA

Upstream 100 bases:

>100_bases
ACGGATCGAGGCGCGACTGGCGCAGGGTACGGCCGACATCGAAATCGCCTGCGTGCAACCGAAGCTCGAACTGTGACCGG
CGCATGACCTTATAGCGGAA

Downstream 100 bases:

>100_bases
GGCGAATCGCTTGTAGCGTGACAATATAGTTCGGAAAATGGCGTAATAGTTTGGAAATTCGAACATGTTGTGGCGCTAAA
GTCCGGAAAGCGCAATTGGA

Product: Superoxide dismutase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 233; Mature: 233

Protein sequence:

>233_residues
MIAIPHAFSGYSVYLARGLRRFCKSPTIVAPNLYNPQKARTMEHTLPPLPYAQDALAPHISKETLEFHYGKHHQTYVTNL
NNLIKGTEFENLSLEDIVKKSSGGVFNNAAQVWNHTFYWNGLKPQGGGAPTGALADAINAKWGSFDKFKEEFTKTAIGTF
GSGWAWLVKKADGSLDLVSTSNAATPLTTDAKPLLTCDVWEHAYYIDYRNARPKYVEAFWNLVNWDFVAKNFA

Sequences:

>Translated_233_residues
MIAIPHAFSGYSVYLARGLRRFCKSPTIVAPNLYNPQKARTMEHTLPPLPYAQDALAPHISKETLEFHYGKHHQTYVTNL
NNLIKGTEFENLSLEDIVKKSSGGVFNNAAQVWNHTFYWNGLKPQGGGAPTGALADAINAKWGSFDKFKEEFTKTAIGTF
GSGWAWLVKKADGSLDLVSTSNAATPLTTDAKPLLTCDVWEHAYYIDYRNARPKYVEAFWNLVNWDFVAKNFA
>Mature_233_residues
MIAIPHAFSGYSVYLARGLRRFCKSPTIVAPNLYNPQKARTMEHTLPPLPYAQDALAPHISKETLEFHYGKHHQTYVTNL
NNLIKGTEFENLSLEDIVKKSSGGVFNNAAQVWNHTFYWNGLKPQGGGAPTGALADAINAKWGSFDKFKEEFTKTAIGTF
GSGWAWLVKKADGSLDLVSTSNAATPLTTDAKPLLTCDVWEHAYYIDYRNARPKYVEAFWNLVNWDFVAKNFA

Specific function: Destroys radicals which are normally produced within the cells and which are toxic to biological systems [H]

COG id: COG0605

COG function: function code P; Superoxide dismutase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the iron/manganese superoxide dismutase family [H]

Homologues:

Organism=Homo sapiens, GI67782307, Length=224, Percent_Identity=40.625, Blast_Score=167, Evalue=7e-42,
Organism=Homo sapiens, GI67782305, Length=224, Percent_Identity=40.625, Blast_Score=167, Evalue=7e-42,
Organism=Homo sapiens, GI67782309, Length=216, Percent_Identity=35.6481481481481, Blast_Score=128, Evalue=4e-30,
Organism=Escherichia coli, GI1787946, Length=192, Percent_Identity=73.9583333333333, Blast_Score=300, Evalue=6e-83,
Organism=Escherichia coli, GI1790342, Length=206, Percent_Identity=47.0873786407767, Blast_Score=178, Evalue=3e-46,
Organism=Caenorhabditis elegans, GI17506561, Length=201, Percent_Identity=38.3084577114428, Blast_Score=142, Evalue=2e-34,
Organism=Caenorhabditis elegans, GI17569479, Length=200, Percent_Identity=38, Blast_Score=135, Evalue=2e-32,
Organism=Saccharomyces cerevisiae, GI6321796, Length=217, Percent_Identity=39.1705069124424, Blast_Score=132, Evalue=6e-32,
Organism=Drosophila melanogaster, GI17136812, Length=196, Percent_Identity=42.3469387755102, Blast_Score=149, Evalue=1e-36,

Paralogues:

None

Copy number: 2020 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 20 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). 900 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001189
- InterPro:   IPR019833
- InterPro:   IPR019832
- InterPro:   IPR019831 [H]

Pfam domain/function: PF02777 Sod_Fe_C; PF00081 Sod_Fe_N [H]

EC number: =1.15.1.1 [H]

Molecular weight: Translated: 26065; Mature: 26065

Theoretical pI: Translated: 8.92; Mature: 8.92

Prosite motif: PS00088 SOD_MN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIAIPHAFSGYSVYLARGLRRFCKSPTIVAPNLYNPQKARTMEHTLPPLPYAQDALAPHI
CEECCCCCCCHHHHHHHHHHHHHCCCCEECCCCCCCHHHHHHHHCCCCCCCCHHHHCCCC
SKETLEFHYGKHHQTYVTNLNNLIKGTEFENLSLEDIVKKSSGGVFNNAAQVWNHTFYWN
CHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHCCCCCCHHHHHHHCCEEEEC
GLKPQGGGAPTGALADAINAKWGSFDKFKEEFTKTAIGTFGSGWAWLVKKADGSLDLVST
CCCCCCCCCCCHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCEEEEEEECCCCEEEEEC
SNAATPLTTDAKPLLTCDVWEHAYYIDYRNARPKYVEAFWNLVNWDFVAKNFA
CCCCCCCCCCCCCEEEEEECCCEEEEEECCCCHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MIAIPHAFSGYSVYLARGLRRFCKSPTIVAPNLYNPQKARTMEHTLPPLPYAQDALAPHI
CEECCCCCCCHHHHHHHHHHHHHCCCCEECCCCCCCHHHHHHHHCCCCCCCCHHHHCCCC
SKETLEFHYGKHHQTYVTNLNNLIKGTEFENLSLEDIVKKSSGGVFNNAAQVWNHTFYWN
CHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHCCCCCCHHHHHHHCCEEEEC
GLKPQGGGAPTGALADAINAKWGSFDKFKEEFTKTAIGTFGSGWAWLVKKADGSLDLVST
CCCCCCCCCCCHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCEEEEEEECCCCEEEEEC
SNAATPLTTDAKPLLTCDVWEHAYYIDYRNARPKYVEAFWNLVNWDFVAKNFA
CCCCCCCCCCCCCEEEEEECCCEEEEEECCCCHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8181762; 12910271 [H]