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The map label for this gene is ybgJ [H]

Identifier: 187929453

GI number: 187929453

Start: 2467832

End: 2468479

Strand: Reverse

Name: ybgJ [H]

Synonym: Rpic_2374

Alternate gene names: 187929453

Gene position: 2468479-2467832 (Counterclockwise)

Preceding gene: 187929454

Following gene: 187929452

Centisome position: 62.61

GC content: 67.75

Gene sequence:

>648_bases
TTGCAGTGCACGATTCACCGGCTGGGCGAACTCGCGCTGTTGTGCGAAGTGCCGCCACCGGCCACCCTGAATTGCCAGCA
GCGCATCTGGGCCATGGCTTCGCGCGCGTCCAATTGGGCGGGCGTGGTCGACGTGGTGCCCGGCATGAACAACCTCACGC
TCGTGTTCGGTCCACTGGCCGATGCGCAGCGATTGACCACGCAGCTGCGTGAGGCCTGGGAAGAGAGCCAGGCGTTGGTG
GCCGACGGCAAACTCGTCGACATCGAAGTCGCCTATGGCGGTGACGAAGGCCCCGACCTGCGCGAAGTCGCCAAGCACAC
CGGCCTCAGCACGGCCGAAGTCGTGCGCCGTCACACCGCGCCGGAATACATCGTCTATTTCCTGGGCTTCCAGCCCGGCT
TTGCCTACATGGGCGGGCTCGACAAGTCACTCGCCACGCCGCGTCGCGCCGAGCCGCGCATGGCCGTGCCGGCCGGTTCG
GTCGGCATCGGCGGCGAGCAGACCGGCATCTACCCGGCCGCATCCCCCGGTGGCTGGCAACTGCTTGGCCGCACAGACGC
GGCGCTCTTCATGCCGCAGCGTAATCCCCCCACGCTGCTGGCGCCCGGAGACCGCATCCGCTTTGTTGCCTCGAAGGTGC
GCGCATGA

Upstream 100 bases:

>100_bases
GAATTTATCGACAATTTATTAACGTATCGCTTTCGTTTTCAAACGCGCGTCGTTTTGCAGGGATCTTCCCGCCAACGGCG
CACACGAGACGGGGGTTAAG

Downstream 100 bases:

>100_bases
GTTCGAAACCCCAACCCATGATCGAGATCGTGCGGGCCGGCGTGCTGGCGTCCGTGCAGGACCTGGGCCGCACCGGCTAT
CGCCGTTTTGGCGTGTGCAC

Product: Allophanate hydrolase subunit 1

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 215; Mature: 215

Protein sequence:

>215_residues
MQCTIHRLGELALLCEVPPPATLNCQQRIWAMASRASNWAGVVDVVPGMNNLTLVFGPLADAQRLTTQLREAWEESQALV
ADGKLVDIEVAYGGDEGPDLREVAKHTGLSTAEVVRRHTAPEYIVYFLGFQPGFAYMGGLDKSLATPRRAEPRMAVPAGS
VGIGGEQTGIYPAASPGGWQLLGRTDAALFMPQRNPPTLLAPGDRIRFVASKVRA

Sequences:

>Translated_215_residues
MQCTIHRLGELALLCEVPPPATLNCQQRIWAMASRASNWAGVVDVVPGMNNLTLVFGPLADAQRLTTQLREAWEESQALV
ADGKLVDIEVAYGGDEGPDLREVAKHTGLSTAEVVRRHTAPEYIVYFLGFQPGFAYMGGLDKSLATPRRAEPRMAVPAGS
VGIGGEQTGIYPAASPGGWQLLGRTDAALFMPQRNPPTLLAPGDRIRFVASKVRA
>Mature_215_residues
MQCTIHRLGELALLCEVPPPATLNCQQRIWAMASRASNWAGVVDVVPGMNNLTLVFGPLADAQRLTTQLREAWEESQALV
ADGKLVDIEVAYGGDEGPDLREVAKHTGLSTAEVVRRHTAPEYIVYFLGFQPGFAYMGGLDKSLATPRRAEPRMAVPAGS
VGIGGEQTGIYPAASPGGWQLLGRTDAALFMPQRNPPTLLAPGDRIRFVASKVRA

Specific function: Unknown

COG id: COG2049

COG function: function code E; Allophanate hydrolase subunit 1

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: To B.subtilis ycsJ and yeast urea amidolyase (DUR1,2) [H]

Homologues:

Organism=Escherichia coli, GI1786929, Length=208, Percent_Identity=52.8846153846154, Blast_Score=226, Evalue=1e-60,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003833
- InterPro:   IPR020899
- InterPro:   IPR010016
- InterPro:   IPR002130 [H]

Pfam domain/function: PF02682 AHS1 [H]

EC number: NA

Molecular weight: Translated: 23121; Mature: 23121

Theoretical pI: Translated: 6.78; Mature: 6.78

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQCTIHRLGELALLCEVPPPATLNCQQRIWAMASRASNWAGVVDVVPGMNNLTLVFGPLA
CCCHHHHHCCEEEEEECCCCCCCCHHHHHHHHHHHCCCCCCEEEECCCCCCEEEEEECCC
DAQRLTTQLREAWEESQALVADGKLVDIEVAYGGDEGPDLREVAKHTGLSTAEVVRRHTA
CHHHHHHHHHHHHHHCCEEEECCEEEEEEEEECCCCCCCHHHHHHHCCCCHHHHHHHCCC
PEYIVYFLGFQPGFAYMGGLDKSLATPRRAEPRMAVPAGSVGIGGEQTGIYPAASPGGWQ
CCEEEEEECCCCCHHHHCCCCHHHCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCEE
LLGRTDAALFMPQRNPPTLLAPGDRIRFVASKVRA
EEECCCEEEEECCCCCCEEECCCCHHHHHHHHHCC
>Mature Secondary Structure
MQCTIHRLGELALLCEVPPPATLNCQQRIWAMASRASNWAGVVDVVPGMNNLTLVFGPLA
CCCHHHHHCCEEEEEECCCCCCCCHHHHHHHHHHHCCCCCCEEEECCCCCCEEEEEECCC
DAQRLTTQLREAWEESQALVADGKLVDIEVAYGGDEGPDLREVAKHTGLSTAEVVRRHTA
CHHHHHHHHHHHHHHCCEEEECCEEEEEEEEECCCCCCCHHHHHHHCCCCHHHHHHHCCC
PEYIVYFLGFQPGFAYMGGLDKSLATPRRAEPRMAVPAGSVGIGGEQTGIYPAASPGGWQ
CCEEEEEECCCCCHHHHCCCCHHHCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCEE
LLGRTDAALFMPQRNPPTLLAPGDRIRFVASKVRA
EEECCCEEEEECCCCCCEEECCCCHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]