Click here to switch to the map view.

The map label for this gene is yedW [H]

Identifier: 187928756

GI number: 187928756

Start: 1761482

End: 1762087

Strand: Reverse

Name: yedW [H]

Synonym: Rpic_1673

Alternate gene names: 187928756

Gene position: 1762087-1761482 (Counterclockwise)

Preceding gene: 187928758

Following gene: 187928753

Centisome position: 44.69

GC content: 60.23

Gene sequence:

>606_bases
ATGAAGCCAGCCAACCCCAAGATCCTCTGCATTGAAGACGACGTTGAAACCGCCGAGTTGATCACCGAAGAACTGGCCGA
ACACGGCTACACCGTGATCACGGCGAACGATGGTGAGTCCGGGCTGGCGATGCTCCTGCGCGAAGCCCCCGATCTGGTGC
TGTGCGACGTAGGCATGCCGGGCATGACCGGGTTCGAGTTGCTGGAGCAATTGCGCACGCTCGCGCCACGTTATGCTGAA
ATTCCGTTCGTCTTTTTGACGGCGATGGCGCAACGCGACTCTGAACTGCGTGGGCGTCGCCTGGGTGCTGATGACTATGT
GACCAAACCGGTCGACTTCGAAATCCTGATGAGCATTGTGCAGACCCGGCTCGCCAGACGGCCGCGCACGCATACCGCAC
ATCCGCCCGTACAACTGAGCGAGCGTGAGGTCGAGGTGCTAGCATGGTCTGCGCGCGGCAAGACATCGGGTGAGATCGCC
ACGATTCTTGGGCTCTCCAAGCGCACGGTCGATTTCCATATGGACAATGCGCGCGAAAAGCTGGGCGTCGCCACGCGCAT
CGAAGCCGTGGTCAGGGCTTCCAGCTCGGGCATTATCAAACCATAG

Upstream 100 bases:

>100_bases
GTGACCGTTTTTGGCGATTGCATAGGTAATGTCCTGCGCAGTTTTTCTTGACGACGTCATGAGCGGAGCATCAGTCACCA
TACCACCAGCTGAAATCCCC

Downstream 100 bases:

>100_bases
GGGCCGCCGCACGAAGCGGCGGCCATCGCTCAGACCGGCGCTTCCTCAAGGGGCGAGTCTTCAGGCGGCTCCTTGCCGAG
GAATACCATCCGCAACGCAG

Product: two component LuxR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 201; Mature: 201

Protein sequence:

>201_residues
MKPANPKILCIEDDVETAELITEELAEHGYTVITANDGESGLAMLLREAPDLVLCDVGMPGMTGFELLEQLRTLAPRYAE
IPFVFLTAMAQRDSELRGRRLGADDYVTKPVDFEILMSIVQTRLARRPRTHTAHPPVQLSEREVEVLAWSARGKTSGEIA
TILGLSKRTVDFHMDNAREKLGVATRIEAVVRASSSGIIKP

Sequences:

>Translated_201_residues
MKPANPKILCIEDDVETAELITEELAEHGYTVITANDGESGLAMLLREAPDLVLCDVGMPGMTGFELLEQLRTLAPRYAE
IPFVFLTAMAQRDSELRGRRLGADDYVTKPVDFEILMSIVQTRLARRPRTHTAHPPVQLSEREVEVLAWSARGKTSGEIA
TILGLSKRTVDFHMDNAREKLGVATRIEAVVRASSSGIIKP
>Mature_201_residues
MKPANPKILCIEDDVETAELITEELAEHGYTVITANDGESGLAMLLREAPDLVLCDVGMPGMTGFELLEQLRTLAPRYAE
IPFVFLTAMAQRDSELRGRRLGADDYVTKPVDFEILMSIVQTRLARRPRTHTAHPPVQLSEREVEVLAWSARGKTSGEIA
TILGLSKRTVDFHMDNAREKLGVATRIEAVVRASSSGIIKP

Specific function: Probable member of a two-component regulatory system yedW/yedV [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

Organism=Escherichia coli, GI87082012, Length=127, Percent_Identity=37.7952755905512, Blast_Score=88, Evalue=4e-19,
Organism=Escherichia coli, GI1790437, Length=189, Percent_Identity=31.7460317460317, Blast_Score=77, Evalue=6e-16,
Organism=Escherichia coli, GI1786784, Length=142, Percent_Identity=30.2816901408451, Blast_Score=76, Evalue=2e-15,
Organism=Escherichia coli, GI1790860, Length=138, Percent_Identity=31.8840579710145, Blast_Score=73, Evalue=1e-14,
Organism=Escherichia coli, GI1788394, Length=222, Percent_Identity=27.4774774774775, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI1788550, Length=179, Percent_Identity=29.0502793296089, Blast_Score=72, Evalue=2e-14,
Organism=Escherichia coli, GI1786599, Length=120, Percent_Identity=31.6666666666667, Blast_Score=71, Evalue=4e-14,
Organism=Escherichia coli, GI1790299, Length=114, Percent_Identity=30.7017543859649, Blast_Score=66, Evalue=1e-12,
Organism=Escherichia coli, GI1788224, Length=65, Percent_Identity=41.5384615384615, Blast_Score=65, Evalue=2e-12,
Organism=Escherichia coli, GI145693157, Length=109, Percent_Identity=33.0275229357798, Blast_Score=64, Evalue=5e-12,
Organism=Escherichia coli, GI1789809, Length=123, Percent_Identity=29.2682926829268, Blast_Score=62, Evalue=2e-11,
Organism=Escherichia coli, GI1788521, Length=184, Percent_Identity=28.804347826087, Blast_Score=62, Evalue=2e-11,
Organism=Escherichia coli, GI1787487, Length=105, Percent_Identity=33.3333333333333, Blast_Score=62, Evalue=3e-11,
Organism=Escherichia coli, GI1790863, Length=107, Percent_Identity=32.7102803738318, Blast_Score=62, Evalue=3e-11,
Organism=Escherichia coli, GI1788905, Length=123, Percent_Identity=32.520325203252, Blast_Score=60, Evalue=7e-11,
Organism=Escherichia coli, GI1786911, Length=142, Percent_Identity=26.7605633802817, Blast_Score=60, Evalue=9e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR001867
- InterPro:   IPR016032
- InterPro:   IPR006291
- InterPro:   IPR001789
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00072 Response_reg; PF00486 Trans_reg_C [H]

EC number: NA

Molecular weight: Translated: 22183; Mature: 22183

Theoretical pI: Translated: 5.15; Mature: 5.15

Prosite motif: PS50110 RESPONSE_REGULATORY ; PS00622 HTH_LUXR_1 ; PS50043 HTH_LUXR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKPANPKILCIEDDVETAELITEELAEHGYTVITANDGESGLAMLLREAPDLVLCDVGMP
CCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHCCCCEEEEECCCC
GMTGFELLEQLRTLAPRYAEIPFVFLTAMAQRDSELRGRRLGADDYVTKPVDFEILMSIV
CCHHHHHHHHHHHHCCCHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHH
QTRLARRPRTHTAHPPVQLSEREVEVLAWSARGKTSGEIATILGLSKRTVDFHMDNAREK
HHHHHCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCEEEEECCCCCEEEEECCCHHHH
LGVATRIEAVVRASSSGIIKP
HHHHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure
MKPANPKILCIEDDVETAELITEELAEHGYTVITANDGESGLAMLLREAPDLVLCDVGMP
CCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHCCCCEEEEECCCC
GMTGFELLEQLRTLAPRYAEIPFVFLTAMAQRDSELRGRRLGADDYVTKPVDFEILMSIV
CCHHHHHHHHHHHHCCCHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHH
QTRLARRPRTHTAHPPVQLSEREVEVLAWSARGKTSGEIATILGLSKRTVDFHMDNAREK
HHHHHCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCEEEEECCCCCEEEEECCCHHHH
LGVATRIEAVVRASSSGIIKP
HHHHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9097040; 9278503 [H]