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The map label for this gene is ycfH [C]

Identifier: 187928508

GI number: 187928508

Start: 1512091

End: 1512894

Strand: Reverse

Name: ycfH [C]

Synonym: Rpic_1422

Alternate gene names: 187928508

Gene position: 1512894-1512091 (Counterclockwise)

Preceding gene: 187928509

Following gene: 187928507

Centisome position: 38.37

GC content: 62.81

Gene sequence:

>804_bases
ATGTTTGTCGATTCCCACTGTCATATCAATTTCCCCGACTTGCGCGCGCGCCTGCCTGAGCTGCTGACGCGCATGCGGGA
GAACCGCGTCACGCACGCACTCTGCATTTCCGTCACGCTGGAGGATTTTCCGAGTGTGCTGGAGATTGCCGAGCAGGAGC
CCAACGTGTACGCCACCGTGGGCGTGCATCCCGACGCTGAGGCCGACGTCGAAGAAGGCCGGTCCATTGAAGAGCCCACG
CTCGAGCGTCTGCTGACGCTGGCCGATCATCCGCGCGTGGTCGGCATCGGCGAAACCGGGCTCGACTACTACCGCCTGGG
CGACCGTACCGTGGCCGACATGGAATGGCAGCGCGATCGCTTTCGTACGCATATTCGCGCGTCGAAGCAGACCGGCAAGC
CGCTGGTGATCCACACGCGCTCGTCGGCTGAGGACACTTTGGCCATCATGCGCGAAGAGGGCGCCGAGGCCGCAGGCGGC
GTCATGCATTGCTTTACTGAGACCTGGGACGTGGCCAAGGCCGCGCTGGACCTGGGTTTCTATATCTCCTTCTCGGGCAT
CGTGACGTTCAAGAACGCGGTGGACCTGCAGGAAACCGCCAGGAAGGTGCCGCTGGACCGCATGCTGATCGAGACCGACT
CGCCGTACTTGGCGCCGGTGCCGTTCCGAGGCAAGACGAACGAGCCGGCGTATGTGCGGCACGTGGGCGAATTCCTGGCT
ACGCTGCGCGGCGAACCACTCGAGCGGATTGCCAGCGCCACCACCGAGAACTTCTTCAATCTATTCAATGCGATACCGCG
ATAA

Upstream 100 bases:

>100_bases
GTGCTGGGCAAACAGATCAATTCGCAGCGCCCCACCCAAACACTTTGATTTTTTCCTGATACGGCGCACGAAGTTTACGC
CGTAACTTTCTGATTATTCG

Downstream 100 bases:

>100_bases
CTTGAAGCAAGCGATGAAAAAAATCGCACTGGCTGGTGCGCTGACCATGGCGTTGTCGGGTGCCGCATTCGCCACGCCGC
AGGACGATCTGCGCAACGCC

Product: hydrolase, TatD family

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 267; Mature: 267

Protein sequence:

>267_residues
MFVDSHCHINFPDLRARLPELLTRMRENRVTHALCISVTLEDFPSVLEIAEQEPNVYATVGVHPDAEADVEEGRSIEEPT
LERLLTLADHPRVVGIGETGLDYYRLGDRTVADMEWQRDRFRTHIRASKQTGKPLVIHTRSSAEDTLAIMREEGAEAAGG
VMHCFTETWDVAKAALDLGFYISFSGIVTFKNAVDLQETARKVPLDRMLIETDSPYLAPVPFRGKTNEPAYVRHVGEFLA
TLRGEPLERIASATTENFFNLFNAIPR

Sequences:

>Translated_267_residues
MFVDSHCHINFPDLRARLPELLTRMRENRVTHALCISVTLEDFPSVLEIAEQEPNVYATVGVHPDAEADVEEGRSIEEPT
LERLLTLADHPRVVGIGETGLDYYRLGDRTVADMEWQRDRFRTHIRASKQTGKPLVIHTRSSAEDTLAIMREEGAEAAGG
VMHCFTETWDVAKAALDLGFYISFSGIVTFKNAVDLQETARKVPLDRMLIETDSPYLAPVPFRGKTNEPAYVRHVGEFLA
TLRGEPLERIASATTENFFNLFNAIPR
>Mature_267_residues
MFVDSHCHINFPDLRARLPELLTRMRENRVTHALCISVTLEDFPSVLEIAEQEPNVYATVGVHPDAEADVEEGRSIEEPT
LERLLTLADHPRVVGIGETGLDYYRLGDRTVADMEWQRDRFRTHIRASKQTGKPLVIHTRSSAEDTLAIMREEGAEAAGG
VMHCFTETWDVAKAALDLGFYISFSGIVTFKNAVDLQETARKVPLDRMLIETDSPYLAPVPFRGKTNEPAYVRHVGEFLA
TLRGEPLERIASATTENFFNLFNAIPR

Specific function: Unknown

COG id: COG0084

COG function: function code L; Mg-dependent DNase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the tatD DNase family [H]

Homologues:

Organism=Homo sapiens, GI110349734, Length=264, Percent_Identity=27.2727272727273, Blast_Score=105, Evalue=5e-23,
Organism=Homo sapiens, GI110349730, Length=264, Percent_Identity=27.2727272727273, Blast_Score=105, Evalue=5e-23,
Organism=Homo sapiens, GI226061853, Length=269, Percent_Identity=27.5092936802974, Blast_Score=104, Evalue=7e-23,
Organism=Homo sapiens, GI14042943, Length=270, Percent_Identity=28.8888888888889, Blast_Score=103, Evalue=2e-22,
Organism=Homo sapiens, GI225903439, Length=249, Percent_Identity=29.718875502008, Blast_Score=101, Evalue=7e-22,
Organism=Homo sapiens, GI225903424, Length=277, Percent_Identity=27.4368231046931, Blast_Score=98, Evalue=9e-21,
Organism=Homo sapiens, GI226061614, Length=262, Percent_Identity=26.7175572519084, Blast_Score=93, Evalue=2e-19,
Organism=Homo sapiens, GI226061595, Length=226, Percent_Identity=27.4336283185841, Blast_Score=88, Evalue=9e-18,
Organism=Escherichia coli, GI1787342, Length=266, Percent_Identity=44.3609022556391, Blast_Score=220, Evalue=6e-59,
Organism=Escherichia coli, GI87082439, Length=265, Percent_Identity=29.811320754717, Blast_Score=117, Evalue=6e-28,
Organism=Escherichia coli, GI48994985, Length=239, Percent_Identity=30.1255230125523, Blast_Score=109, Evalue=2e-25,
Organism=Caenorhabditis elegans, GI17559024, Length=283, Percent_Identity=27.5618374558304, Blast_Score=115, Evalue=3e-26,
Organism=Caenorhabditis elegans, GI17565396, Length=302, Percent_Identity=27.1523178807947, Blast_Score=96, Evalue=2e-20,
Organism=Caenorhabditis elegans, GI71980746, Length=269, Percent_Identity=27.1375464684015, Blast_Score=96, Evalue=3e-20,
Organism=Caenorhabditis elegans, GI17543026, Length=192, Percent_Identity=30.2083333333333, Blast_Score=86, Evalue=3e-17,
Organism=Drosophila melanogaster, GI221330018, Length=283, Percent_Identity=29.3286219081272, Blast_Score=101, Evalue=4e-22,
Organism=Drosophila melanogaster, GI24586117, Length=284, Percent_Identity=29.5774647887324, Blast_Score=101, Evalue=5e-22,
Organism=Drosophila melanogaster, GI24648690, Length=276, Percent_Identity=27.1739130434783, Blast_Score=78, Evalue=7e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015992
- InterPro:   IPR001130
- InterPro:   IPR018228
- InterPro:   IPR012278
- InterPro:   IPR015991 [H]

Pfam domain/function: PF01026 TatD_DNase [H]

EC number: 3.1.21.-

Molecular weight: Translated: 30052; Mature: 30052

Theoretical pI: Translated: 4.98; Mature: 4.98

Prosite motif: PS01137 TATD_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFVDSHCHINFPDLRARLPELLTRMRENRVTHALCISVTLEDFPSVLEIAEQEPNVYATV
CEECCCCEECCHHHHHHHHHHHHHHHHCCCCEEHEEEEEHHHHHHHHHHHHCCCCEEEEE
GVHPDAEADVEEGRSIEEPTLERLLTLADHPRVVGIGETGLDYYRLGDRTVADMEWQRDR
ECCCCCCCCHHCCCCCCHHHHHHHHHHHCCCEEEEECCCCCCEEECCCCEEHHHHHHHHH
FRTHIRASKQTGKPLVIHTRSSAEDTLAIMREEGAEAAGGVMHCFTETWDVAKAALDLGF
HHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHCCCCHHCCHHHHHHHHHHHHHHHHHHHH
YISFSGIVTFKNAVDLQETARKVPLDRMLIETDSPYLAPVPFRGKTNEPAYVRHVGEFLA
EEEECCEEEECCCCCHHHHHHHCCHHHEEEECCCCEEECCCCCCCCCCCHHHHHHHHHHH
TLRGEPLERIASATTENFFNLFNAIPR
HHCCCHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MFVDSHCHINFPDLRARLPELLTRMRENRVTHALCISVTLEDFPSVLEIAEQEPNVYATV
CEECCCCEECCHHHHHHHHHHHHHHHHCCCCEEHEEEEEHHHHHHHHHHHHCCCCEEEEE
GVHPDAEADVEEGRSIEEPTLERLLTLADHPRVVGIGETGLDYYRLGDRTVADMEWQRDR
ECCCCCCCCHHCCCCCCHHHHHHHHHHHCCCEEEEECCCCCCEEECCCCEEHHHHHHHHH
FRTHIRASKQTGKPLVIHTRSSAEDTLAIMREEGAEAAGGVMHCFTETWDVAKAALDLGF
HHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHCCCCHHCCHHHHHHHHHHHHHHHHHHHH
YISFSGIVTFKNAVDLQETARKVPLDRMLIETDSPYLAPVPFRGKTNEPAYVRHVGEFLA
EEEECCEEEECCCCCHHHHHHHCCHHHEEEECCCCEEECCCCCCCCCCCHHHHHHHHHHH
TLRGEPLERIASATTENFFNLFNAIPR
HHCCCHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]