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The map label for this gene is abgR [H]

Identifier: 187928494

GI number: 187928494

Start: 1497831

End: 1498769

Strand: Reverse

Name: abgR [H]

Synonym: Rpic_1408

Alternate gene names: 187928494

Gene position: 1498769-1497831 (Counterclockwise)

Preceding gene: 187928498

Following gene: 187928492

Centisome position: 38.02

GC content: 64.32

Gene sequence:

>939_bases
ATGAGCGAGGAGGAGAGCGAGGTGAAGCTGCACCAGTTGCGCATCCTGCTTGCCGTGGCACAGCACGGCAGCATTCACGA
GGCCTCGCGCGGGTTGCATATCTCGCAGCCGGCGTTGTCCAAGGCGATTGCGGAACTGGAACGGGAGCTCGGCGTCACGC
TGCTGTCGCGTTCGGTGCGCGGCGTGAGCCTGACGGCGTATGGGATGGCGCTCGTCAAACGGGCCAGCGTGGTCGAGCAG
GAACTGCGTCACGCGCTGGAAGACATCGAAGCCATTCGCGGCCACGCAGAGGCCGAACTGAACATCGGCTTTACCGCCGT
CGCCTCCAGCGGCCCGCTACCGGATGCCATGGCGGCATTCCGCACGCGCTTTCCCAATGTGGCGTTGCGCGGTTTCGAAC
AGCGCTCGCAGCAGATTCTTGAAGGTCTGCGCGAAGGCCGCATCGATCTGGGATTGATCTCCACCAACAGCGGGCCCGGC
ACGAGCAGCTTCCAGTGGGAGCCGTTATTCTCCGTGCCGATGCGCTTGGCGGTGCGCCCCGGTCATCCGCTACGGCGCAC
GCGCAAGCTGCGCTCGCTCCTGGATGCCGACTGGCTGGTGCTGGACCCGCTGGATGACCCTGGCAGCCCGATGGCAAGCC
TAATGCGGCTGCACCGGCTGGAAATCCCGCACCGGATCGTGCAGAGCGGCTCCAACCTGCTCGGCCTGCAACTGGCTACC
AAGACGGACCTGGTGAGCATGTGGTCGGATTTTGTCTTCACCAACACACTGGGGCCGCTGCGTACGATTTCGGGCGCGCT
GGAGGTGCTCCCCATGGAAGACGAACTACCCGACTTCAGCGTCTACATGGTCTACCGATCGGCGGACCTGATGACGCATG
CCTGCGCGGAATTCAGCAAGGAGATTCGGCACGCGGCGCAGCGCTATCGTCATCGCTGA

Upstream 100 bases:

>100_bases
TCTCGATAACCAAATAGAATCACCGTCATAACCGGCATATATCCGCTATCAGGGAAAGCCCGTGAAGGCGTGAGGCGAGA
CGCACACCCAACCGTGTGCA

Downstream 100 bases:

>100_bases
CCGTCACGCGTCGGCTTCCGCACCCTCCGCGCGCATGGCCCCCGGCGGTCGTCCGACCACCCGCTTGAACGCGCGGCTGA
ACGCAGCGAGCGACCCATAG

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 312; Mature: 311

Protein sequence:

>312_residues
MSEEESEVKLHQLRILLAVAQHGSIHEASRGLHISQPALSKAIAELERELGVTLLSRSVRGVSLTAYGMALVKRASVVEQ
ELRHALEDIEAIRGHAEAELNIGFTAVASSGPLPDAMAAFRTRFPNVALRGFEQRSQQILEGLREGRIDLGLISTNSGPG
TSSFQWEPLFSVPMRLAVRPGHPLRRTRKLRSLLDADWLVLDPLDDPGSPMASLMRLHRLEIPHRIVQSGSNLLGLQLAT
KTDLVSMWSDFVFTNTLGPLRTISGALEVLPMEDELPDFSVYMVYRSADLMTHACAEFSKEIRHAAQRYRHR

Sequences:

>Translated_312_residues
MSEEESEVKLHQLRILLAVAQHGSIHEASRGLHISQPALSKAIAELERELGVTLLSRSVRGVSLTAYGMALVKRASVVEQ
ELRHALEDIEAIRGHAEAELNIGFTAVASSGPLPDAMAAFRTRFPNVALRGFEQRSQQILEGLREGRIDLGLISTNSGPG
TSSFQWEPLFSVPMRLAVRPGHPLRRTRKLRSLLDADWLVLDPLDDPGSPMASLMRLHRLEIPHRIVQSGSNLLGLQLAT
KTDLVSMWSDFVFTNTLGPLRTISGALEVLPMEDELPDFSVYMVYRSADLMTHACAEFSKEIRHAAQRYRHR
>Mature_311_residues
SEEESEVKLHQLRILLAVAQHGSIHEASRGLHISQPALSKAIAELERELGVTLLSRSVRGVSLTAYGMALVKRASVVEQE
LRHALEDIEAIRGHAEAELNIGFTAVASSGPLPDAMAAFRTRFPNVALRGFEQRSQQILEGLREGRIDLGLISTNSGPGT
SSFQWEPLFSVPMRLAVRPGHPLRRTRKLRSLLDADWLVLDPLDDPGSPMASLMRLHRLEIPHRIVQSGSNLLGLQLATK
TDLVSMWSDFVFTNTLGPLRTISGALEVLPMEDELPDFSVYMVYRSADLMTHACAEFSKEIRHAAQRYRHR

Specific function: Could be the regulator of the abg operon [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787601, Length=297, Percent_Identity=30.976430976431, Blast_Score=140, Evalue=1e-34,
Organism=Escherichia coli, GI1789506, Length=299, Percent_Identity=24.0802675585284, Blast_Score=92, Evalue=4e-20,
Organism=Escherichia coli, GI87081904, Length=249, Percent_Identity=29.718875502008, Blast_Score=88, Evalue=9e-19,
Organism=Escherichia coli, GI1790399, Length=177, Percent_Identity=32.2033898305085, Blast_Score=86, Evalue=4e-18,
Organism=Escherichia coli, GI145693105, Length=180, Percent_Identity=27.7777777777778, Blast_Score=84, Evalue=1e-17,
Organism=Escherichia coli, GI157672245, Length=176, Percent_Identity=34.0909090909091, Blast_Score=79, Evalue=5e-16,
Organism=Escherichia coli, GI1788887, Length=292, Percent_Identity=26.3698630136986, Blast_Score=78, Evalue=1e-15,
Organism=Escherichia coli, GI1787879, Length=203, Percent_Identity=30.0492610837438, Blast_Score=76, Evalue=2e-15,
Organism=Escherichia coli, GI1789204, Length=210, Percent_Identity=31.9047619047619, Blast_Score=75, Evalue=6e-15,
Organism=Escherichia coli, GI1788748, Length=167, Percent_Identity=29.3413173652695, Blast_Score=72, Evalue=3e-14,
Organism=Escherichia coli, GI1787530, Length=186, Percent_Identity=27.9569892473118, Blast_Score=70, Evalue=3e-13,
Organism=Escherichia coli, GI1786401, Length=299, Percent_Identity=26.7558528428094, Blast_Score=65, Evalue=5e-12,
Organism=Escherichia coli, GI1788297, Length=170, Percent_Identity=29.4117647058824, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1788481, Length=202, Percent_Identity=28.7128712871287, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1787949, Length=174, Percent_Identity=24.7126436781609, Blast_Score=61, Evalue=8e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 34678; Mature: 34547

Theoretical pI: Translated: 7.18; Mature: 7.18

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSEEESEVKLHQLRILLAVAQHGSIHEASRGLHISQPALSKAIAELERELGVTLLSRSVR
CCCCHHHHHHHHHHHHHHHHHCCCHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCC
GVSLTAYGMALVKRASVVEQELRHALEDIEAIRGHAEAELNIGFTAVASSGPLPDAMAAF
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCEEEECCCCCCHHHHHHH
RTRFPNVALRGFEQRSQQILEGLREGRIDLGLISTNSGPGTSSFQWEPLFSVPMRLAVRP
HHHCCCHHHHHHHHHHHHHHHHHHHCCEEEEEEECCCCCCCCCCCCCHHHHCCHHEEECC
GHPLRRTRKLRSLLDADWLVLDPLDDPGSPMASLMRLHRLEIPHRIVQSGSNLLGLQLAT
CCHHHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHHHHCHHHHHHCCCCEEEEEEHH
KTDLVSMWSDFVFTNTLGPLRTISGALEVLPMEDELPDFSVYMVYRSADLMTHACAEFSK
HHHHHHHHHHHHHHCCCCHHHHHHHHHHEEECCCCCCCCEEEEEEEHHHHHHHHHHHHHH
EIRHAAQRYRHR
HHHHHHHHHCCC
>Mature Secondary Structure 
SEEESEVKLHQLRILLAVAQHGSIHEASRGLHISQPALSKAIAELERELGVTLLSRSVR
CCCHHHHHHHHHHHHHHHHHCCCHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCC
GVSLTAYGMALVKRASVVEQELRHALEDIEAIRGHAEAELNIGFTAVASSGPLPDAMAAF
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCEEEECCCCCCHHHHHHH
RTRFPNVALRGFEQRSQQILEGLREGRIDLGLISTNSGPGTSSFQWEPLFSVPMRLAVRP
HHHCCCHHHHHHHHHHHHHHHHHHHCCEEEEEEECCCCCCCCCCCCCHHHHCCHHEEECC
GHPLRRTRKLRSLLDADWLVLDPLDDPGSPMASLMRLHRLEIPHRIVQSGSNLLGLQLAT
CCHHHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHHHHCHHHHHHCCCCEEEEEEHH
KTDLVSMWSDFVFTNTLGPLRTISGALEVLPMEDELPDFSVYMVYRSADLMTHACAEFSK
HHHHHHHHHHHHHHCCCCHHHHHHHHHHEEECCCCCCCCEEEEEEEHHHHHHHHHHHHHH
EIRHAAQRYRHR
HHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503; 9829935 [H]