Click here to switch to the map view.

The map label for this gene is ybfB [H]

Identifier: 187928416

GI number: 187928416

Start: 1421493

End: 1422710

Strand: Direct

Name: ybfB [H]

Synonym: Rpic_1328

Alternate gene names: 187928416

Gene position: 1421493-1422710 (Clockwise)

Preceding gene: 187928411

Following gene: 187928417

Centisome position: 36.06

GC content: 66.42

Gene sequence:

>1218_bases
ATGACATCGAAATCTTTCACGCAATCGCCCTGGTTGCCGGTATTGGCCGGCGGGGCGGTGATCGGCGTGGCGCTGGGCAT
TCGGCACGTGCAAGGCCTATTCCTCGTGCCCGTCACGATGGGCCATGGCTGGACACGCGAAACGTTCGGACTGGCGATTG
CGTTACAAAACCTCATCTGGGGCGCGGCACAGCCATTTGCGGGCATGCTGGCCGACCGCTACGGCGCGGCCAAGGTGGTC
GTTGCCGGCATCGTGGTCTATGCGCTTGGGTTGCTGCTGATGGCCCATGCTGGCACGCCGCTGGGCTTCACGCTGTCGGC
GGGCGGGCTGATCGGGCTCGGGCTGTCAGGCACGTCGTTCGGCGTCGTGTATGGCGCGATCAGCCGATTGACGCCGCCCG
AGCGGCGCAGCTGGGCGCTGGGCGTGGCGGGCGCGGTGGGCGGTGTCGGCCAGTTCGTGATGGTGCCGACGGCGCAGGGC
TTGCTGAGTACGGTCGGCTGGGTGACGGCGCTGGTCGTCATGGCGGTGGTCATGGCGATCTTCTTGCCGCTGACCGCGCC
GCTGCGCGAGAGAACATCGGCTGCCGCCGCGCAGCAGGCGCAGCAAAGCATGGGTTCGGCCATCCGCGAGGCCTTTGCCC
ACCGCGGTTTTTGGCTGCTGAATCTCGGGTTCCTGACGTGCGGATTCCAGCTCGCCTTTATCGGTGCGCACATGCCGGCG
TATCTGCTCGACAAGGGGCTCACCGGCCGCCACGGCATGGTCGCGCTGGCACTGATTGCGGCCGCCAACATCGTCGGCAC
GTATTACTGCGGCGCGCTGGGCGGGCTGTTCCGGCGCAAGTATCTGCTGTCGTTGCTGTACCTGATTCGCACGGCGGCGA
TTGCGCTGTTTATCCTGCTCCCGCTGTCGCCCGCAACGCTGTATGCGTTTGCCATCGTGATGGGCCTGCTGTGGCTGGGG
ACGGTGCCGCTGACCAACGGGCTGCTGTCGCAGGTGTTTGGGGTGCGCTACATCGGCACGCTGTTCGGCTTCGTATTTCT
TGGTCACCAGATCGGCGCGTTCCTGGGCGTGTGGCTGGGCGGCGTGGTGTACGACCACCTGCATTCCTACGACGCGATCT
GGTTTGGCGCCATGGCGCTCGGTGTGGTGGCCGCGCTGCTGCACTGGCCGATCGACGATCGCCAACTCGTGCGTACGCCG
GTGGCGCAACCCGCGTGA

Upstream 100 bases:

>100_bases
TAGGGCGAAGTTTAATAAGCCATCAGGCGACATTCCAGCCCAACGCGCATTCGGTACGCTTGCGAAGCTGGAATGTCAGT
CACACCGGAGAAAAACGCTC

Downstream 100 bases:

>100_bases
ACGCACAGTTCAAAACATGGATGGCTTGGGCGCTGGCAGCGGCCGGCGCCGCCCTGATCTTTGCGGCGTGGCTGACCCCG
GAAGGCGCACTTTCCTTTGT

Product: major facilitator superfamily protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 405; Mature: 404

Protein sequence:

>405_residues
MTSKSFTQSPWLPVLAGGAVIGVALGIRHVQGLFLVPVTMGHGWTRETFGLAIALQNLIWGAAQPFAGMLADRYGAAKVV
VAGIVVYALGLLLMAHAGTPLGFTLSAGGLIGLGLSGTSFGVVYGAISRLTPPERRSWALGVAGAVGGVGQFVMVPTAQG
LLSTVGWVTALVVMAVVMAIFLPLTAPLRERTSAAAAQQAQQSMGSAIREAFAHRGFWLLNLGFLTCGFQLAFIGAHMPA
YLLDKGLTGRHGMVALALIAAANIVGTYYCGALGGLFRRKYLLSLLYLIRTAAIALFILLPLSPATLYAFAIVMGLLWLG
TVPLTNGLLSQVFGVRYIGTLFGFVFLGHQIGAFLGVWLGGVVYDHLHSYDAIWFGAMALGVVAALLHWPIDDRQLVRTP
VAQPA

Sequences:

>Translated_405_residues
MTSKSFTQSPWLPVLAGGAVIGVALGIRHVQGLFLVPVTMGHGWTRETFGLAIALQNLIWGAAQPFAGMLADRYGAAKVV
VAGIVVYALGLLLMAHAGTPLGFTLSAGGLIGLGLSGTSFGVVYGAISRLTPPERRSWALGVAGAVGGVGQFVMVPTAQG
LLSTVGWVTALVVMAVVMAIFLPLTAPLRERTSAAAAQQAQQSMGSAIREAFAHRGFWLLNLGFLTCGFQLAFIGAHMPA
YLLDKGLTGRHGMVALALIAAANIVGTYYCGALGGLFRRKYLLSLLYLIRTAAIALFILLPLSPATLYAFAIVMGLLWLG
TVPLTNGLLSQVFGVRYIGTLFGFVFLGHQIGAFLGVWLGGVVYDHLHSYDAIWFGAMALGVVAALLHWPIDDRQLVRTP
VAQPA
>Mature_404_residues
TSKSFTQSPWLPVLAGGAVIGVALGIRHVQGLFLVPVTMGHGWTRETFGLAIALQNLIWGAAQPFAGMLADRYGAAKVVV
AGIVVYALGLLLMAHAGTPLGFTLSAGGLIGLGLSGTSFGVVYGAISRLTPPERRSWALGVAGAVGGVGQFVMVPTAQGL
LSTVGWVTALVVMAVVMAIFLPLTAPLRERTSAAAAQQAQQSMGSAIREAFAHRGFWLLNLGFLTCGFQLAFIGAHMPAY
LLDKGLTGRHGMVALALIAAANIVGTYYCGALGGLFRRKYLLSLLYLIRTAAIALFILLPLSPATLYAFAIVMGLLWLGT
VPLTNGLLSQVFGVRYIGTLFGFVFLGHQIGAFLGVWLGGVVYDHLHSYDAIWFGAMALGVVAALLHWPIDDRQLVRTPV
AQPA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the major facilitator superfamily [H]

Homologues:

Organism=Escherichia coli, GI1789969, Length=366, Percent_Identity=24.8633879781421, Blast_Score=75, Evalue=7e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020846
- InterPro:   IPR011701
- InterPro:   IPR016196 [H]

Pfam domain/function: PF07690 MFS_1 [H]

EC number: NA

Molecular weight: Translated: 42572; Mature: 42441

Theoretical pI: Translated: 10.26; Mature: 10.26

Prosite motif: PS50850 MFS

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTSKSFTQSPWLPVLAGGAVIGVALGIRHVQGLFLVPVTMGHGWTRETFGLAIALQNLIW
CCCCCCCCCCCCHHHHCHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHHHH
GAAQPFAGMLADRYGAAKVVVAGIVVYALGLLLMAHAGTPLGFTLSAGGLIGLGLSGTSF
HCCCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCEEEECCCCCHH
GVVYGAISRLTPPERRSWALGVAGAVGGVGQFVMVPTAQGLLSTVGWVTALVVMAVVMAI
HHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHH
FLPLTAPLRERTSAAAAQQAQQSMGSAIREAFAHRGFWLLNLGFLTCGFQLAFIGAHMPA
HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEHHHHHHHHHHHHHHHHCCHH
YLLDKGLTGRHGMVALALIAAANIVGTYYCGALGGLFRRKYLLSLLYLIRTAAIALFILL
HHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
PLSPATLYAFAIVMGLLWLGTVPLTNGLLSQVFGVRYIGTLFGFVFLGHQIGAFLGVWLG
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GVVYDHLHSYDAIWFGAMALGVVAALLHWPIDDRQLVRTPVAQPA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCC
>Mature Secondary Structure 
TSKSFTQSPWLPVLAGGAVIGVALGIRHVQGLFLVPVTMGHGWTRETFGLAIALQNLIW
CCCCCCCCCCCHHHHCHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHHHH
GAAQPFAGMLADRYGAAKVVVAGIVVYALGLLLMAHAGTPLGFTLSAGGLIGLGLSGTSF
HCCCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCEEEECCCCCHH
GVVYGAISRLTPPERRSWALGVAGAVGGVGQFVMVPTAQGLLSTVGWVTALVVMAVVMAI
HHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHH
FLPLTAPLRERTSAAAAQQAQQSMGSAIREAFAHRGFWLLNLGFLTCGFQLAFIGAHMPA
HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEHHHHHHHHHHHHHHHHCCHH
YLLDKGLTGRHGMVALALIAAANIVGTYYCGALGGLFRRKYLLSLLYLIRTAAIALFILL
HHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
PLSPATLYAFAIVMGLLWLGTVPLTNGLLSQVFGVRYIGTLFGFVFLGHQIGAFLGVWLG
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GVVYDHLHSYDAIWFGAMALGVVAALLHWPIDDRQLVRTPVAQPA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]