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The map label for this gene is ygcF [H]

Identifier: 187928417

GI number: 187928417

Start: 1422957

End: 1423595

Strand: Direct

Name: ygcF [H]

Synonym: Rpic_1329

Alternate gene names: 187928417

Gene position: 1422957-1423595 (Clockwise)

Preceding gene: 187928416

Following gene: 187928418

Centisome position: 36.09

GC content: 64.79

Gene sequence:

>639_bases
ATGACTTACGCCGTCAAGGAAATCTTCTACACGCTGCAAGGCGAGGGTGCCAACACCGGCCGCGCAGCTGTCTTCTGCCG
CTTTGCCGGCTGCAATCTCTGGAGTGGGCGCGAAGCCGATCGCGCCACCGCCGTCTGCCAGTTCTGTGACACCGACTTCG
TCGGCACGGACGGCACGCAAGGCGGCAAATACACCACCGCCGAGGCACTCGCCGATACCGTTGCCGCCGAATGGCCGGCC
AGCGCCACGGGCGGCAAACCGCTCGTCATCTGCACCGGCGGCGAACCGCTGCTGCAACTCGACAAGCCGCTGATCGACGC
GCTGCACGCACGCGGTTTCGAAATCGCCATCGAAACCAACGGCACCATCGCCGTGCCGGAAGGCATCGACTGGGTGTGCG
TGAGCCCGAAGATGGGTTCCGAACTGGTCGTCACGCGCGGCGACGAGCTGAAGGTGGTGATTCCGCAAGACGGGCAGGAC
CTCGACGCATACGAACGGCTGGATTTCCAGCATTTCTTCCTGCAGGCCATGGACGGCCCGCTTGCCCGGCAGAATACGGC
GGCAGCCGTTGAGCTGTGCCAGCGCCGTCCGCGCTGGCGCCTGTCGCTGCAAACCCATAAGATGCTGGGCATCCGCTAA

Upstream 100 bases:

>100_bases
GTGAAACAATATTGGGTTAATCACTAGTGGGCACTGGTACGGTTTGCGCGGGAAATACGTCGCTTCTGCGTCGTTCTCCT
GTGAATGCCACCGTTCAGAC

Downstream 100 bases:

>100_bases
GGCGGGCCGCAGCACTTTGTCCCCGGTTTCCTGCCGGTTCCAGCCGTTTCGCGGCGCCCGCTGCCGCCACCTTGCTCCAT
GACCAAGACCGTTTCCATTA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 212; Mature: 211

Protein sequence:

>212_residues
MTYAVKEIFYTLQGEGANTGRAAVFCRFAGCNLWSGREADRATAVCQFCDTDFVGTDGTQGGKYTTAEALADTVAAEWPA
SATGGKPLVICTGGEPLLQLDKPLIDALHARGFEIAIETNGTIAVPEGIDWVCVSPKMGSELVVTRGDELKVVIPQDGQD
LDAYERLDFQHFFLQAMDGPLARQNTAAAVELCQRRPRWRLSLQTHKMLGIR

Sequences:

>Translated_212_residues
MTYAVKEIFYTLQGEGANTGRAAVFCRFAGCNLWSGREADRATAVCQFCDTDFVGTDGTQGGKYTTAEALADTVAAEWPA
SATGGKPLVICTGGEPLLQLDKPLIDALHARGFEIAIETNGTIAVPEGIDWVCVSPKMGSELVVTRGDELKVVIPQDGQD
LDAYERLDFQHFFLQAMDGPLARQNTAAAVELCQRRPRWRLSLQTHKMLGIR
>Mature_211_residues
TYAVKEIFYTLQGEGANTGRAAVFCRFAGCNLWSGREADRATAVCQFCDTDFVGTDGTQGGKYTTAEALADTVAAEWPAS
ATGGKPLVICTGGEPLLQLDKPLIDALHARGFEIAIETNGTIAVPEGIDWVCVSPKMGSELVVTRGDELKVVIPQDGQDL
DAYERLDFQHFFLQAMDGPLARQNTAAAVELCQRRPRWRLSLQTHKMLGIR

Specific function: Unknown

COG id: COG0602

COG function: function code O; Organic radical activating enzymes

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the radical SAM superfamily [H]

Homologues:

Organism=Escherichia coli, GI1789139, Length=240, Percent_Identity=31.25, Blast_Score=78, Evalue=4e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR007197 [H]

Pfam domain/function: PF04055 Radical_SAM [H]

EC number: NA

Molecular weight: Translated: 23041; Mature: 22910

Theoretical pI: Translated: 4.77; Mature: 4.77

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.3 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
3.3 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTYAVKEIFYTLQGEGANTGRAAVFCRFAGCNLWSGREADRATAVCQFCDTDFVGTDGTQ
CCEEHEEEEEEEECCCCCCCCEEEEEEEECCCCCCCCCCHHHHHHHHHCCCCCCCCCCCC
GGKYTTAEALADTVAAEWPASATGGKPLVICTGGEPLLQLDKPLIDALHARGFEIAIETN
CCCEEHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCEEEEEECC
GTIAVPEGIDWVCVSPKMGSELVVTRGDELKVVIPQDGQDLDAYERLDFQHFFLQAMDGP
CEEECCCCCCEEEECCCCCCEEEEECCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHCCC
LARQNTAAAVELCQRRPRWRLSLQTHKMLGIR
CCCCCHHHHHHHHHCCCCEEEEEEEEEEECCC
>Mature Secondary Structure 
TYAVKEIFYTLQGEGANTGRAAVFCRFAGCNLWSGREADRATAVCQFCDTDFVGTDGTQ
CEEHEEEEEEEECCCCCCCCEEEEEEEECCCCCCCCCCHHHHHHHHHCCCCCCCCCCCC
GGKYTTAEALADTVAAEWPASATGGKPLVICTGGEPLLQLDKPLIDALHARGFEIAIETN
CCCEEHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCEEEEEECC
GTIAVPEGIDWVCVSPKMGSELVVTRGDELKVVIPQDGQDLDAYERLDFQHFFLQAMDGP
CEEECCCCCCEEEECCCCCCEEEEECCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHCCC
LARQNTAAAVELCQRRPRWRLSLQTHKMLGIR
CCCCCHHHHHHHHHCCCCEEEEEEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]