Click here to switch to the map view.

The map label for this gene is 187928293

Identifier: 187928293

GI number: 187928293

Start: 1292198

End: 1292815

Strand: Direct

Name: 187928293

Synonym: Rpic_1204

Alternate gene names: NA

Gene position: 1292198-1292815 (Clockwise)

Preceding gene: 187928292

Following gene: 187928294

Centisome position: 32.78

GC content: 68.45

Gene sequence:

>618_bases
ATGAAAGCAGTGCCGGATGACGTGGCCGGAGCAGCGTTCGCGCGCTGCCTGCACGACATCCGCGCCTGCCGCGAGTGCAA
GGGCGCATTGGCGCACGAGCCTCGCCCGGTGGTCGTGGCGGACCGCCGCGCCCGTGTCCTGATCATCGGACAGGCGCCCG
GCCGCATCGTCCACGAAACCGGTATTCCCTGGAACGACCGTTCTGGGGACCGCCTGCGCCAGTGGCTGCAGATCTCATAC
GACGATTTTTATGCCGACCGGCGCATCGCCGTGGTGCCGATGGGTTTTTGCTTCCCGGGCACCGGTGCGAATGGCGACTT
GCCGCCCCGCCCGGAATGTGCACCCAGATGGCACCGGCCCCTGCTGACGGCGATGCCCGACGTGAAACTCGCGCTGCTGG
TGGGCACGTATGCCCAGCGCAACTACCTCGACGTGCCGCGCGACTGGTCGCTGACCGACGTGGTGCGCAACGGCCCCGTG
CAGGACGCCGACGGCCGTGTGCTCCTCCCGCTGCCGCATCCGAGCCCGCGCAATCTGGCCTGGTTCAAACACAACCCGTG
GTTTGACGCGCACATCGTGCCGACGCTGCGGGCCGCGCTGGCCGACGCATTCGCTTGA

Upstream 100 bases:

>100_bases
TACGCCGATATCGAATCGCTGCCGCAGCGCTTCGAAGTCATGCCGGCAGACGCTGACCGCATCAAGGTCTATATCGCCCA
GCACACCGGTCTTTAAAGCG

Downstream 100 bases:

>100_bases
TACGCCTGGGCTGATGCATGGCATTGGCCTGGAACCGATACAATCGAAATCTCCTTTTCGATTTCGCTTTCCCATTCCCG
CATGTCCGCCAACGATGCTC

Product: Uracil-DNA glycosylase superfamily protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 205; Mature: 205

Protein sequence:

>205_residues
MKAVPDDVAGAAFARCLHDIRACRECKGALAHEPRPVVVADRRARVLIIGQAPGRIVHETGIPWNDRSGDRLRQWLQISY
DDFYADRRIAVVPMGFCFPGTGANGDLPPRPECAPRWHRPLLTAMPDVKLALLVGTYAQRNYLDVPRDWSLTDVVRNGPV
QDADGRVLLPLPHPSPRNLAWFKHNPWFDAHIVPTLRAALADAFA

Sequences:

>Translated_205_residues
MKAVPDDVAGAAFARCLHDIRACRECKGALAHEPRPVVVADRRARVLIIGQAPGRIVHETGIPWNDRSGDRLRQWLQISY
DDFYADRRIAVVPMGFCFPGTGANGDLPPRPECAPRWHRPLLTAMPDVKLALLVGTYAQRNYLDVPRDWSLTDVVRNGPV
QDADGRVLLPLPHPSPRNLAWFKHNPWFDAHIVPTLRAALADAFA
>Mature_205_residues
MKAVPDDVAGAAFARCLHDIRACRECKGALAHEPRPVVVADRRARVLIIGQAPGRIVHETGIPWNDRSGDRLRQWLQISY
DDFYADRRIAVVPMGFCFPGTGANGDLPPRPECAPRWHRPLLTAMPDVKLALLVGTYAQRNYLDVPRDWSLTDVVRNGPV
QDADGRVLLPLPHPSPRNLAWFKHNPWFDAHIVPTLRAALADAFA

Specific function: Unknown

COG id: COG1573

COG function: function code L; Uracil-DNA glycosylase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005122 [H]

Pfam domain/function: PF03167 UDG [H]

EC number: NA

Molecular weight: Translated: 22875; Mature: 22875

Theoretical pI: Translated: 8.76; Mature: 8.76

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.4 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
2.4 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKAVPDDVAGAAFARCLHDIRACRECKGALAHEPRPVVVADRRARVLIIGQAPGRIVHET
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCEEEEEEECCCCCEEEEC
GIPWNDRSGDRLRQWLQISYDDFYADRRIAVVPMGFCFPGTGANGDLPPRPECAPRWHRP
CCCCCCCCHHHHHHHHHCCHHHHCCCCEEEEEEECEECCCCCCCCCCCCCCCCCCCCCCC
LLTAMPDVKLALLVGTYAQRNYLDVPRDWSLTDVVRNGPVQDADGRVLLPLPHPSPRNLA
HHHHCCCCEEEEEEHHHHCCCCCCCCCCCCHHHHHHCCCCCCCCCEEEEECCCCCCCCEE
WFKHNPWFDAHIVPTLRAALADAFA
EEECCCCCCCCHHHHHHHHHHHHCC
>Mature Secondary Structure
MKAVPDDVAGAAFARCLHDIRACRECKGALAHEPRPVVVADRRARVLIIGQAPGRIVHET
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCEEEEEEECCCCCEEEEC
GIPWNDRSGDRLRQWLQISYDDFYADRRIAVVPMGFCFPGTGANGDLPPRPECAPRWHRP
CCCCCCCCHHHHHHHHHCCHHHHCCCCEEEEEEECEECCCCCCCCCCCCCCCCCCCCCCC
LLTAMPDVKLALLVGTYAQRNYLDVPRDWSLTDVVRNGPVQDADGRVLLPLPHPSPRNLA
HHHHCCCCEEEEEEHHHHCCCCCCCCCCCCHHHHHHCCCCCCCCCEEEEECCCCCCCCEE
WFKHNPWFDAHIVPTLRAALADAFA
EEECCCCCCCCHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]