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The map label for this gene is ugpB [H]

Identifier: 187928185

GI number: 187928185

Start: 1163804

End: 1165120

Strand: Direct

Name: ugpB [H]

Synonym: Rpic_1092

Alternate gene names: 187928185

Gene position: 1163804-1165120 (Clockwise)

Preceding gene: 187928182

Following gene: 187928186

Centisome position: 29.52

GC content: 60.59

Gene sequence:

>1317_bases
ATGTCGATCAAGAAGATTGCGGGTGCGGCGGCAGTACTGGCCGCGTGTACGTTTGCGCAGGGCGCGTACGCAGTGACGGA
AATCCAATGGTGGCATTCGATGGAAGGCGCCTTGAACGACAAGGTGAACGAGATCGCCACCAAGTTCAATGCCAGCCAGT
CCGATTACAAGATCGTGCCGGTCTACAAGGGCCAATACGATGAATCGCTGGCTGCGGGCATTGCGGCGTTCCGCGCCGGC
AATGCACCGGCCATCCTGCAAGTGTTCGAGGTTGGTACCGCAACGATGATGAACGCCAAGGGCGCCATTGTGCCGGTGGC
CAAGATCATGAAGGACGCCGGCGAGAAGTTCGACCCGAAGGCCTATGTGCCGGCCGTGGCGGGCTACTACACGTCGAACA
AGGGCGAGATGCTGTCGTTCCCGTTCAACAGTTCGACGACGATCATGTATTACAACAAGGACGCCTTCAAGAAGGCTGGC
CTTGACCCGAACAAGCCGCCCGCAACGTGGCAGGAAGTGGCTGTCGATGCGGCCAAGCTGAAGGCAGCTGGTGTGCCCTG
CGGTTACACGACCGACTGGCAGTCATGGGTGCATCTGGAGAGCTTCTCGGCGTGGCACAACGTGTCGTTCGCGACCGAGA
ACAACGGCTTTGGTGGCGCCAAGGCCCGCTTGAACTTCAACGGTCCGGTGCAGATCAAGCATATCGAGAACCTGCTCGAC
ATGCAGAAGAAGGGCTACTTCACCTACGCCGGCCGCAAGGACGAGCCGAAGGCGAAGTTCATCGCGGGTGAGTGCGCCAT
GCACACGGGTTCGTCGGCAGCGCTGGCGAACATCCGCAAGAACGCCAAGTTCAACTTCAGCCCGGCACCGCTGCCGTATG
AAGCCGGCGTGCCGGGTGCCCCGCAGAACACGATCATCGGCGGCGCTTCGCTGTGGGTGATGGGCGGCCACAAGGCTGAA
GAGTACAAGGGCGTGGCGAAGTTCTTCACGTTCCTGTCGCGTCCGGAAATGCAGGCCGACTGGCACCAGTCGACGGGTTA
TCTGCCCGTGACGCTGGAAGCGTATGAGCTGACCAAGAAGTCCGGCTTCTATGAGAAGAACCCGGGCGCCGACGTGGCCG
TCAAGCAGATGATCGTCAAGACGACCGACAAGTCGCGCGGCATTCGTCTGGGCAACTTCCCGCAGATCCGTCAGGTGATC
GACGAAGAGCTGGAATCCGTCTGGGCGGGCAAGAAGACGCCGAAGGAAGCGCTGGACACGGCAGTGTCACGCGGCAACGA
GCTGCTCGTCCGCTTCGAGAAGACCGTCAAGGAATAA

Upstream 100 bases:

>100_bases
AGTAACATCCCGCTGTCATAAAAATGACCGACCGTGCATATACAGTCGGCGCGCCGTGGGCGGAGCGAGGGAGCCCGCCG
GGTCGAAACAAGGAGAAATG

Downstream 100 bases:

>100_bases
GCGCCGATTCGGCGCTCGTCTAAACCGCCGGCCTCGTGCGCTTGCACCGGCCGGCGGTGCGTTTTTGGAATGTCGCATGG
AAAAACGCGTCGTTTTCCGA

Product: family 1 extracellular solute-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 438; Mature: 437

Protein sequence:

>438_residues
MSIKKIAGAAAVLAACTFAQGAYAVTEIQWWHSMEGALNDKVNEIATKFNASQSDYKIVPVYKGQYDESLAAGIAAFRAG
NAPAILQVFEVGTATMMNAKGAIVPVAKIMKDAGEKFDPKAYVPAVAGYYTSNKGEMLSFPFNSSTTIMYYNKDAFKKAG
LDPNKPPATWQEVAVDAAKLKAAGVPCGYTTDWQSWVHLESFSAWHNVSFATENNGFGGAKARLNFNGPVQIKHIENLLD
MQKKGYFTYAGRKDEPKAKFIAGECAMHTGSSAALANIRKNAKFNFSPAPLPYEAGVPGAPQNTIIGGASLWVMGGHKAE
EYKGVAKFFTFLSRPEMQADWHQSTGYLPVTLEAYELTKKSGFYEKNPGADVAVKQMIVKTTDKSRGIRLGNFPQIRQVI
DEELESVWAGKKTPKEALDTAVSRGNELLVRFEKTVKE

Sequences:

>Translated_438_residues
MSIKKIAGAAAVLAACTFAQGAYAVTEIQWWHSMEGALNDKVNEIATKFNASQSDYKIVPVYKGQYDESLAAGIAAFRAG
NAPAILQVFEVGTATMMNAKGAIVPVAKIMKDAGEKFDPKAYVPAVAGYYTSNKGEMLSFPFNSSTTIMYYNKDAFKKAG
LDPNKPPATWQEVAVDAAKLKAAGVPCGYTTDWQSWVHLESFSAWHNVSFATENNGFGGAKARLNFNGPVQIKHIENLLD
MQKKGYFTYAGRKDEPKAKFIAGECAMHTGSSAALANIRKNAKFNFSPAPLPYEAGVPGAPQNTIIGGASLWVMGGHKAE
EYKGVAKFFTFLSRPEMQADWHQSTGYLPVTLEAYELTKKSGFYEKNPGADVAVKQMIVKTTDKSRGIRLGNFPQIRQVI
DEELESVWAGKKTPKEALDTAVSRGNELLVRFEKTVKE
>Mature_437_residues
SIKKIAGAAAVLAACTFAQGAYAVTEIQWWHSMEGALNDKVNEIATKFNASQSDYKIVPVYKGQYDESLAAGIAAFRAGN
APAILQVFEVGTATMMNAKGAIVPVAKIMKDAGEKFDPKAYVPAVAGYYTSNKGEMLSFPFNSSTTIMYYNKDAFKKAGL
DPNKPPATWQEVAVDAAKLKAAGVPCGYTTDWQSWVHLESFSAWHNVSFATENNGFGGAKARLNFNGPVQIKHIENLLDM
QKKGYFTYAGRKDEPKAKFIAGECAMHTGSSAALANIRKNAKFNFSPAPLPYEAGVPGAPQNTIIGGASLWVMGGHKAEE
YKGVAKFFTFLSRPEMQADWHQSTGYLPVTLEAYELTKKSGFYEKNPGADVAVKQMIVKTTDKSRGIRLGNFPQIRQVID
EELESVWAGKKTPKEALDTAVSRGNELLVRFEKTVKE

Specific function: sn-glycerol-3-phosphate and glycerophosphoryl diester- binding protein interacts with the binding protein-dependent transport system ugpACE [H]

COG id: COG1653

COG function: function code G; ABC-type sugar transport system, periplasmic component

Gene ontology:

Cell location: Periplasm (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 1 family [H]

Homologues:

Organism=Escherichia coli, GI1789862, Length=418, Percent_Identity=61.7224880382775, Blast_Score=535, Evalue=1e-153,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006059
- InterPro:   IPR006061 [H]

Pfam domain/function: PF01547 SBP_bac_1 [H]

EC number: NA

Molecular weight: Translated: 47752; Mature: 47621

Theoretical pI: Translated: 9.41; Mature: 9.41

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSIKKIAGAAAVLAACTFAQGAYAVTEIQWWHSMEGALNDKVNEIATKFNASQSDYKIVP
CCCHHHHHHHHHHHHHHHCCCCEEEEEEHHHHHHCCHHHHHHHHHHHHHCCCCCCEEEEE
VYKGQYDESLAAGIAAFRAGNAPAILQVFEVGTATMMNAKGAIVPVAKIMKDAGEKFDPK
EECCCCHHHHHHHHHHHHCCCCCCEEHEECCCCCEEECCCCCCHHHHHHHHHCCCCCCCC
AYVPAVAGYYTSNKGEMLSFPFNSSTTIMYYNKDAFKKAGLDPNKPPATWQEVAVDAAKL
CCCCHHHCEEECCCCCEEEECCCCCCEEEEECCHHHHHCCCCCCCCCCCHHHHHHHHHHH
KAAGVPCGYTTDWQSWVHLESFSAWHNVSFATENNGFGGAKARLNFNGPVQIKHIENLLD
HHCCCCCCCCCCHHHHEEHHHHHHHCCEEEEECCCCCCCEEEEEECCCCEEHHHHHHHHH
MQKKGYFTYAGRKDEPKAKFIAGECAMHTGSSAALANIRKNAKFNFSPAPLPYEAGVPGA
HHHCCCEEECCCCCCCCCEEEECHHHHCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
PQNTIIGGASLWVMGGHKAEEYKGVAKFFTFLSRPEMQADWHQSTGYLPVTLEAYELTKK
CCCCEECCCEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCHHCCCCEEEEEEEHHHHHHH
SGFYEKNPGADVAVKQMIVKTTDKSRGIRLGNFPQIRQVIDEELESVWAGKKTPKEALDT
CCCCCCCCCCHHHHHHHHHHCCCCCCCEECCCCHHHHHHHHHHHHHHHCCCCCHHHHHHH
AVSRGNELLVRFEKTVKE
HHHCCCCEEEEEHHHHCC
>Mature Secondary Structure 
SIKKIAGAAAVLAACTFAQGAYAVTEIQWWHSMEGALNDKVNEIATKFNASQSDYKIVP
CCHHHHHHHHHHHHHHHCCCCEEEEEEHHHHHHCCHHHHHHHHHHHHHCCCCCCEEEEE
VYKGQYDESLAAGIAAFRAGNAPAILQVFEVGTATMMNAKGAIVPVAKIMKDAGEKFDPK
EECCCCHHHHHHHHHHHHCCCCCCEEHEECCCCCEEECCCCCCHHHHHHHHHCCCCCCCC
AYVPAVAGYYTSNKGEMLSFPFNSSTTIMYYNKDAFKKAGLDPNKPPATWQEVAVDAAKL
CCCCHHHCEEECCCCCEEEECCCCCCEEEEECCHHHHHCCCCCCCCCCCHHHHHHHHHHH
KAAGVPCGYTTDWQSWVHLESFSAWHNVSFATENNGFGGAKARLNFNGPVQIKHIENLLD
HHCCCCCCCCCCHHHHEEHHHHHHHCCEEEEECCCCCCCEEEEEECCCCEEHHHHHHHHH
MQKKGYFTYAGRKDEPKAKFIAGECAMHTGSSAALANIRKNAKFNFSPAPLPYEAGVPGA
HHHCCCEEECCCCCCCCCEEEECHHHHCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
PQNTIIGGASLWVMGGHKAEEYKGVAKFFTFLSRPEMQADWHQSTGYLPVTLEAYELTKK
CCCCEECCCEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCHHCCCCEEEEEEEHHHHHHH
SGFYEKNPGADVAVKQMIVKTTDKSRGIRLGNFPQIRQVIDEELESVWAGKKTPKEALDT
CCCCCCCCCCHHHHHHHHHHCCCCCCCEECCCCHHHHHHHHHHHHHHHCCCCCHHHHHHH
AVSRGNELLVRFEKTVKE
HHHCCCCEEEEEHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA