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The map label for this gene is 187928044

Identifier: 187928044

GI number: 187928044

Start: 1006406

End: 1007641

Strand: Direct

Name: 187928044

Synonym: Rpic_0949

Alternate gene names: NA

Gene position: 1006406-1007641 (Clockwise)

Preceding gene: 187928043

Following gene: 187928045

Centisome position: 25.53

GC content: 61.57

Gene sequence:

>1236_bases
ATGCGCGGTGTTCCCTTGGTGCAGGAGATTTCCGAGCTAACAACGATGAAAACCACACGAGCCAAACGTTCTTTTTCGTT
CCACCCGGTCTACGCATCAGCAGCGGTGCTGTGCGCCGGCGTGTCGATGCACGCATCGGCGCAAAGCTCCGTCACGCTGT
ACGGCGTCGTCGATAACGCCATTGCCTATTCGAGCAACCAGGGCGGGCATTCGAATACGTATATGAATTCCGGTGCCCTG
GCCGCCAGCAAGTTCGGCCTGCTCGGCTCGGAAGACCTGGGAGGCGGCACTACAGCAGTGTTTCGTCTGGAGAACGGCTT
CGCTGCCGACACGGGCGCGCAAAGCAAGGCGAACACCATCTTTAACCGACAGGCCTATGTCGGCCTGGCCAACAAGGACT
ACGGCCAGCTCACGATGGGCCGTCAGTACACACCGTACTTCCAGTACGTTGCCGCGCTGGGCCCGACCAATGTGCTGACG
GGCGCGGTCGGTGCGCACCCGGGCGATATCGACGCGATGGACACCACGCTGCGTGTGCCGAATTCGGTCACCTATACGTC
GCCCACGTTTGGCGGTCTCCAGGCGGGTCTGCAATATGGCATGGGCGAGCAGGCGGGCAGCATGTCCAACGGCAGCGCCT
TTAGCGCAGCGATGCGTTATGACTACCAGGCGTTTGCCTGGTCGGCTGGCTACGTTCGGTTGAAGAACGTCCCGACCTTC
CAGAACAACACCGGCGACTTCGCCAACAACGCGCCCATCAACAAAGGCTACGCAACGGCTGATACCGCACAGATCATCGG
CACTGCTGCGCGCTACACCGTGGGCAAGCTGATGATGGGCCTGAACTACTCCAACGTGCAGTACCGCCCGGGTGCCGGTT
CGCCGGCGGGGTTTGCACAGACAGCGTCGTTCAACACGTTCGGTGCCATTGCCACATACGCGCTCACGCCTGCATTGACC
TTGACCGCCGGCTACAGCTACACCGCCGAGAACAAGCGCAATGGGGTCGACAATGCGGCGCGCTATCACCAGATCTCGAT
GGAACAGCTGTACTCGTTCTCCAAGCGCACCGCGCTCTACTTCGTTGAGGCCTATCAGAAGGCGAGCGGGCAGACGCTGA
GCTCGGCGGGTGGAGTCGTCAACGCCGTGGCCTCGGTGGGCGACTCGCAGAACGGCACGCCGTCGAACGGACGCAGCCAG
TTTGTGGGCATGGTCGGCATTCGGCATTCGTTCTGA

Upstream 100 bases:

>100_bases
AACCGTTGTTGCGGGTGGCTGGCGCCGCCTGACGTTGCAGTTGCTGGCCTAGTGCCGCATTCTCGCTGCGAATCACGTGC
GGGTCCGTAGAGGCCCCGTG

Downstream 100 bases:

>100_bases
TGCATAGCCAGACCTGGCTTGCGCCCGGGCCGGTGCATACGCTGCAGGCCGGCGCGCTGACGATGGATGTCGCGCCGGCG
GCAGGCGGCCGCATTGCCTC

Product: porin

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 411; Mature: 411

Protein sequence:

>411_residues
MRGVPLVQEISELTTMKTTRAKRSFSFHPVYASAAVLCAGVSMHASAQSSVTLYGVVDNAIAYSSNQGGHSNTYMNSGAL
AASKFGLLGSEDLGGGTTAVFRLENGFAADTGAQSKANTIFNRQAYVGLANKDYGQLTMGRQYTPYFQYVAALGPTNVLT
GAVGAHPGDIDAMDTTLRVPNSVTYTSPTFGGLQAGLQYGMGEQAGSMSNGSAFSAAMRYDYQAFAWSAGYVRLKNVPTF
QNNTGDFANNAPINKGYATADTAQIIGTAARYTVGKLMMGLNYSNVQYRPGAGSPAGFAQTASFNTFGAIATYALTPALT
LTAGYSYTAENKRNGVDNAARYHQISMEQLYSFSKRTALYFVEAYQKASGQTLSSAGGVVNAVASVGDSQNGTPSNGRSQ
FVGMVGIRHSF

Sequences:

>Translated_411_residues
MRGVPLVQEISELTTMKTTRAKRSFSFHPVYASAAVLCAGVSMHASAQSSVTLYGVVDNAIAYSSNQGGHSNTYMNSGAL
AASKFGLLGSEDLGGGTTAVFRLENGFAADTGAQSKANTIFNRQAYVGLANKDYGQLTMGRQYTPYFQYVAALGPTNVLT
GAVGAHPGDIDAMDTTLRVPNSVTYTSPTFGGLQAGLQYGMGEQAGSMSNGSAFSAAMRYDYQAFAWSAGYVRLKNVPTF
QNNTGDFANNAPINKGYATADTAQIIGTAARYTVGKLMMGLNYSNVQYRPGAGSPAGFAQTASFNTFGAIATYALTPALT
LTAGYSYTAENKRNGVDNAARYHQISMEQLYSFSKRTALYFVEAYQKASGQTLSSAGGVVNAVASVGDSQNGTPSNGRSQ
FVGMVGIRHSF
>Mature_411_residues
MRGVPLVQEISELTTMKTTRAKRSFSFHPVYASAAVLCAGVSMHASAQSSVTLYGVVDNAIAYSSNQGGHSNTYMNSGAL
AASKFGLLGSEDLGGGTTAVFRLENGFAADTGAQSKANTIFNRQAYVGLANKDYGQLTMGRQYTPYFQYVAALGPTNVLT
GAVGAHPGDIDAMDTTLRVPNSVTYTSPTFGGLQAGLQYGMGEQAGSMSNGSAFSAAMRYDYQAFAWSAGYVRLKNVPTF
QNNTGDFANNAPINKGYATADTAQIIGTAARYTVGKLMMGLNYSNVQYRPGAGSPAGFAQTASFNTFGAIATYALTPALT
LTAGYSYTAENKRNGVDNAARYHQISMEQLYSFSKRTALYFVEAYQKASGQTLSSAGGVVNAVASVGDSQNGTPSNGRSQ
FVGMVGIRHSF

Specific function: Forms anion selective channels [H]

COG id: COG3203

COG function: function code M; Outer membrane protein (porin)

Gene ontology:

Cell location: Cell outer membrane; Multi-pass membrane protein [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: To bacterial outer membrane proteins and porins [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001702
- InterPro:   IPR002299 [H]

Pfam domain/function: PF00267 Porin_1 [H]

EC number: NA

Molecular weight: Translated: 43214; Mature: 43214

Theoretical pI: Translated: 9.47; Mature: 9.47

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRGVPLVQEISELTTMKTTRAKRSFSFHPVYASAAVLCAGVSMHASAQSSVTLYGVVDNA
CCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCHHCCCCCCCEEEEEEECCC
IAYSSNQGGHSNTYMNSGALAASKFGLLGSEDLGGGTTAVFRLENGFAADTGAQSKANTI
EEECCCCCCCCCCEECCCCCHHHHCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCHHHHH
FNRQAYVGLANKDYGQLTMGRQYTPYFQYVAALGPTNVLTGAVGAHPGDIDAMDTTLRVP
CCCEEEEEECCCCCCCEECCCCCCHHHHHHHHCCCHHHHCCCCCCCCCCCCCCCCEEECC
NSVTYTSPTFGGLQAGLQYGMGEQAGSMSNGSAFSAAMRYDYQAFAWSAGYVRLKNVPTF
CCEEECCCCCHHHHHHHHHCCCCCCCCCCCCCHHHHHHHCCCHHEEEECCEEEECCCCCC
QNNTGDFANNAPINKGYATADTAQIIGTAARYTVGKLMMGLNYSNVQYRPGAGSPAGFAQ
CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCCC
TASFNTFGAIATYALTPALTLTAGYSYTAENKRNGVDNAARYHQISMEQLYSFSKRTALY
CCCCCCHHHHHHHHHCCCEEEECCCEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHEE
FVEAYQKASGQTLSSAGGVVNAVASVGDSQNGTPSNGRSQFVGMVGIRHSF
HHHHHHHCCCCCHHHCCHHHHHHHHCCCCCCCCCCCCCHHEEEEEEEECCC
>Mature Secondary Structure
MRGVPLVQEISELTTMKTTRAKRSFSFHPVYASAAVLCAGVSMHASAQSSVTLYGVVDNA
CCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCHHCCCCCCCEEEEEEECCC
IAYSSNQGGHSNTYMNSGALAASKFGLLGSEDLGGGTTAVFRLENGFAADTGAQSKANTI
EEECCCCCCCCCCEECCCCCHHHHCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCHHHHH
FNRQAYVGLANKDYGQLTMGRQYTPYFQYVAALGPTNVLTGAVGAHPGDIDAMDTTLRVP
CCCEEEEEECCCCCCCEECCCCCCHHHHHHHHCCCHHHHCCCCCCCCCCCCCCCCEEECC
NSVTYTSPTFGGLQAGLQYGMGEQAGSMSNGSAFSAAMRYDYQAFAWSAGYVRLKNVPTF
CCEEECCCCCHHHHHHHHHCCCCCCCCCCCCCHHHHHHHCCCHHEEEECCEEEECCCCCC
QNNTGDFANNAPINKGYATADTAQIIGTAARYTVGKLMMGLNYSNVQYRPGAGSPAGFAQ
CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCCC
TASFNTFGAIATYALTPALTLTAGYSYTAENKRNGVDNAARYHQISMEQLYSFSKRTALY
CCCCCCHHHHHHHHHCCCEEEECCCEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHEE
FVEAYQKASGQTLSSAGGVVNAVASVGDSQNGTPSNGRSQFVGMVGIRHSF
HHHHHHHCCCCCHHHCCHHHHHHHHCCCCCCCCCCCCCHHEEEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 1658537; 12910271 [H]