| Definition | Ralstonia pickettii 12J chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_010682 |
| Length | 3,942,557 |
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The map label for this gene is yicI [C]
Identifier: 187928043
GI number: 187928043
Start: 1003946
End: 1006357
Strand: Direct
Name: yicI [C]
Synonym: Rpic_0948
Alternate gene names: 187928043
Gene position: 1003946-1006357 (Clockwise)
Preceding gene: 187928042
Following gene: 187928044
Centisome position: 25.46
GC content: 64.55
Gene sequence:
>2412_bases ATGTCCATGTTGAATCCCCCCCGATTCGAAGTCCAGGCGCAGGAAGGCAACCGGCTGCGGCTGGCCAGCAGCGCCGGCGC TGCGATTGAACTCTTCGTGCTGGAAGAAGACATCATCCGCGTGCTCGTGCTGCCGCAGGGCGACCTGCGCGGCCCGGCCA CGTGGTCGATCGCCCCCGGCGGTGACGACACGCCGCTCGAAGGGCGTGACCGCCGCGACCTGAGCGGCTTCGCGCTGCCC GCATTTGCGCTGCACAGCGACGCCGACACGCTGCGCGTGGAAACCAGCAAGATTCGCCTGAGCGTCGCCCTGGCAGGCGG CTTCTGCACATGGCAGATCCGCGGTGCCGGCGGATGGCAGACCGTGCTGAACGATCGCCCAACGCAGGCCTACAACTTCG GCTATTGGGACGAGCAGGTCTACCACTACGTGCGCCGCGAACCCGGCGAGATGTACTTCGGCCTGGGTGAGCGCGCCGGC GACATGAATCGTGCGCACCAGCGTTACGAGATGCGCAACATCGACGCGATGGGCTATAGCGCCCGCACGACTGATCCGCT GTACAAGCACATCCCGTTCTACGTGACGTGGCAGCCGGAAAACCGCACCGGCTTCGGGCTGTTCTACGACACGCTGTCCG ATTGCAGCTTCGACATGGGCCGCGAGCTGGACAACTACCACGGCCTCTATCGCTACTTTGTCGCGCCGCATGGTGATCTC GACTACTACTTCATTGCCTCGCCCGATACGCCGCTCGGCGCCACGCGCCGCTTCACGTGGATGACCGGCCGCCCCGCGTG GATGCCGAAGTGGGGCCTCGGTTACTCCGGCTCGACCATGACGTACACCGACGCGCCCAACGCGCAGGAACAGATGGCCG AGTTCATCAAGGGATGCCGTGAGCACGACATCCTCTGCGATTCGTTCCATCTGTCGTCGGGCTATACGTCGATCGGCCCG AAGCGCTACGTCTTCAACTGGAACACCGACAAGTTCCCGGATGCGCGGGGCTTCGTCCAGAGCTATCTGGATGCGGGCAT TCGCCTGTGCCCGAACATCAAGCCGTGCCTGCTGCGCGATCACCCGAAGTTTGAAGAAGCGAAGCAAGCCGGGCTGCTGA TTTGCGATGCAGCCGGTGAGCCGGCCTGGGTGCAATTCTGGGATGAGGTGGGCGCGTATCTCGACTTCACCAATCCGAAA ACGCTCGACTGGTGGAAGGCCAACGTCAAGAGCGCGCTGCTGGAATTCGGCATGGCGTCCACCTGGAACGACAACAACGA GTTCGAAGTCTGGACGCCCGACGCTTTCGCTTACGGGTTCGGCAAGAAGGCGCCCATCCGCGAGGCCAAGGTGCTGCACA CGATGCTGATGATGCGCGCCTCGCGCGAAGCGCAACTTGAGTTTGCGCCGCAGCGTCGGCCGTTCCTGGTGTCGCGCTCG GGCGGTGTCGGCATGCAGCGCTACGTGCAGACGTGGTCCGGTGACAACTACACGTCGTGGGAAACGCTGCGCTACAACCT GAAGATGGGCCTGGGCCTCGCGCTGTCCGGCGTCTCGAACATCGGCCACGATATCGGCGGGTTTGCGGGCCCGGCGCCTT CGCCGGAACTGCTGGTGCGCTGGGTGGCCTTTGGCGTCTTCCTGCCGCGCTTCTCCATCCACTCGTGGAACGATGACAAG ACCGTCAACGAGCCGTGGATGTATCCGCAGATCACCTCGCAAATTGCCTCGCTGATCAAGCTGCGCTATCGGCTGATTCC GTATCTGTACGAACTGCTGTGGCAATCCACGCAGGCCTACGAGCCGGTACTGCGTCCGACGTTTGCCGAGTTCCCGAACG ACCGCCGCTGCTACGCCGAGTGCGATGACATGATGATCGGCTCGTCGCTGCTGGTGGCGCCGGCGGTGGACGAAGGGCAG ACCGAGCGCACCGTCTATCTGCCGGCCGGCGCGCGCTGGGTGTCGTACTGGAGCGGCGAGGCCTTCGAAGGCGGACAGGC CACCACGCTGCCTTCGCCCTGGGACCAGCCGGTGATGCTGGTTCGCGAAGGCGGCGTGATCGCGCTGAACGTGGCGGAGC AGCATTTCGACCAGCGCGCCGATCAACGCGGCTTCCTTGTCGTGCCCATGCAAGGCGTTGGCGAATCCGTTGGCGGCTGC ATTGAAGACGACGGCGAAACCGAAGCGTGGCGCGACGGCGAGCAGGGCCGCTGGAGCGTGCGTGCGGTGTCGGATGCGCA TGCCATCACGCTGCACGTATCGTGCGAAGGCAAGATGCCGACGCTGGCTGACACCGTTGAGATTCACCTGCCCGCCGGTG ATGTGCGGCAAGTGCAGACGCCGCATGCCCGCGTGCTGGAAACCGTTGTTGCGGGTGGCTGGCGCCGCCTGACGTTGCAG TTGCTGGCCTAG
Upstream 100 bases:
>100_bases ATTGGCGCGGCGTTGCTGATTGTTCTGATTCGCGGTCAGTCGCATGAAGAACGTGCCGCGCGTCAGATGCGTCTCTCTGC TTCAAACTGAGTTGAAACCG
Downstream 100 bases:
>100_bases TGCCGCATTCTCGCTGCGAATCACGTGCGGGTCCGTAGAGGCCCCGTGATGCGCGGTGTTCCCTTGGTGCAGGAGATTTC CGAGCTAACAACGATGAAAA
Product: glycoside hydrolase family 31
Products: NA
Alternate protein names: Alpha-glucosidase II [H]
Number of amino acids: Translated: 803; Mature: 802
Protein sequence:
>803_residues MSMLNPPRFEVQAQEGNRLRLASSAGAAIELFVLEEDIIRVLVLPQGDLRGPATWSIAPGGDDTPLEGRDRRDLSGFALP AFALHSDADTLRVETSKIRLSVALAGGFCTWQIRGAGGWQTVLNDRPTQAYNFGYWDEQVYHYVRREPGEMYFGLGERAG DMNRAHQRYEMRNIDAMGYSARTTDPLYKHIPFYVTWQPENRTGFGLFYDTLSDCSFDMGRELDNYHGLYRYFVAPHGDL DYYFIASPDTPLGATRRFTWMTGRPAWMPKWGLGYSGSTMTYTDAPNAQEQMAEFIKGCREHDILCDSFHLSSGYTSIGP KRYVFNWNTDKFPDARGFVQSYLDAGIRLCPNIKPCLLRDHPKFEEAKQAGLLICDAAGEPAWVQFWDEVGAYLDFTNPK TLDWWKANVKSALLEFGMASTWNDNNEFEVWTPDAFAYGFGKKAPIREAKVLHTMLMMRASREAQLEFAPQRRPFLVSRS GGVGMQRYVQTWSGDNYTSWETLRYNLKMGLGLALSGVSNIGHDIGGFAGPAPSPELLVRWVAFGVFLPRFSIHSWNDDK TVNEPWMYPQITSQIASLIKLRYRLIPYLYELLWQSTQAYEPVLRPTFAEFPNDRRCYAECDDMMIGSSLLVAPAVDEGQ TERTVYLPAGARWVSYWSGEAFEGGQATTLPSPWDQPVMLVREGGVIALNVAEQHFDQRADQRGFLVVPMQGVGESVGGC IEDDGETEAWRDGEQGRWSVRAVSDAHAITLHVSCEGKMPTLADTVEIHLPAGDVRQVQTPHARVLETVVAGGWRRLTLQ LLA
Sequences:
>Translated_803_residues MSMLNPPRFEVQAQEGNRLRLASSAGAAIELFVLEEDIIRVLVLPQGDLRGPATWSIAPGGDDTPLEGRDRRDLSGFALP AFALHSDADTLRVETSKIRLSVALAGGFCTWQIRGAGGWQTVLNDRPTQAYNFGYWDEQVYHYVRREPGEMYFGLGERAG DMNRAHQRYEMRNIDAMGYSARTTDPLYKHIPFYVTWQPENRTGFGLFYDTLSDCSFDMGRELDNYHGLYRYFVAPHGDL DYYFIASPDTPLGATRRFTWMTGRPAWMPKWGLGYSGSTMTYTDAPNAQEQMAEFIKGCREHDILCDSFHLSSGYTSIGP KRYVFNWNTDKFPDARGFVQSYLDAGIRLCPNIKPCLLRDHPKFEEAKQAGLLICDAAGEPAWVQFWDEVGAYLDFTNPK TLDWWKANVKSALLEFGMASTWNDNNEFEVWTPDAFAYGFGKKAPIREAKVLHTMLMMRASREAQLEFAPQRRPFLVSRS GGVGMQRYVQTWSGDNYTSWETLRYNLKMGLGLALSGVSNIGHDIGGFAGPAPSPELLVRWVAFGVFLPRFSIHSWNDDK TVNEPWMYPQITSQIASLIKLRYRLIPYLYELLWQSTQAYEPVLRPTFAEFPNDRRCYAECDDMMIGSSLLVAPAVDEGQ TERTVYLPAGARWVSYWSGEAFEGGQATTLPSPWDQPVMLVREGGVIALNVAEQHFDQRADQRGFLVVPMQGVGESVGGC IEDDGETEAWRDGEQGRWSVRAVSDAHAITLHVSCEGKMPTLADTVEIHLPAGDVRQVQTPHARVLETVVAGGWRRLTLQ LLA >Mature_802_residues SMLNPPRFEVQAQEGNRLRLASSAGAAIELFVLEEDIIRVLVLPQGDLRGPATWSIAPGGDDTPLEGRDRRDLSGFALPA FALHSDADTLRVETSKIRLSVALAGGFCTWQIRGAGGWQTVLNDRPTQAYNFGYWDEQVYHYVRREPGEMYFGLGERAGD MNRAHQRYEMRNIDAMGYSARTTDPLYKHIPFYVTWQPENRTGFGLFYDTLSDCSFDMGRELDNYHGLYRYFVAPHGDLD YYFIASPDTPLGATRRFTWMTGRPAWMPKWGLGYSGSTMTYTDAPNAQEQMAEFIKGCREHDILCDSFHLSSGYTSIGPK RYVFNWNTDKFPDARGFVQSYLDAGIRLCPNIKPCLLRDHPKFEEAKQAGLLICDAAGEPAWVQFWDEVGAYLDFTNPKT LDWWKANVKSALLEFGMASTWNDNNEFEVWTPDAFAYGFGKKAPIREAKVLHTMLMMRASREAQLEFAPQRRPFLVSRSG GVGMQRYVQTWSGDNYTSWETLRYNLKMGLGLALSGVSNIGHDIGGFAGPAPSPELLVRWVAFGVFLPRFSIHSWNDDKT VNEPWMYPQITSQIASLIKLRYRLIPYLYELLWQSTQAYEPVLRPTFAEFPNDRRCYAECDDMMIGSSLLVAPAVDEGQT ERTVYLPAGARWVSYWSGEAFEGGQATTLPSPWDQPVMLVREGGVIALNVAEQHFDQRADQRGFLVVPMQGVGESVGGCI EDDGETEAWRDGEQGRWSVRAVSDAHAITLHVSCEGKMPTLADTVEIHLPAGDVRQVQTPHARVLETVVAGGWRRLTLQL LA
Specific function: Unknown
COG id: COG1501
COG function: function code G; Alpha-glucosidases, family 31 of glycosyl hydrolases
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the glycosyl hydrolase 31 family [H]
Homologues:
Organism=Homo sapiens, GI66346737, Length=597, Percent_Identity=28.9782244556114, Blast_Score=210, Evalue=4e-54, Organism=Homo sapiens, GI88900491, Length=616, Percent_Identity=27.4350649350649, Blast_Score=187, Evalue=3e-47, Organism=Homo sapiens, GI38202257, Length=616, Percent_Identity=27.4350649350649, Blast_Score=187, Evalue=4e-47, Organism=Homo sapiens, GI119393895, Length=545, Percent_Identity=26.605504587156, Blast_Score=163, Evalue=7e-40, Organism=Homo sapiens, GI119393893, Length=545, Percent_Identity=26.605504587156, Blast_Score=163, Evalue=7e-40, Organism=Homo sapiens, GI119393891, Length=545, Percent_Identity=26.605504587156, Blast_Score=163, Evalue=7e-40, Organism=Homo sapiens, GI157364974, Length=643, Percent_Identity=23.6391912908243, Blast_Score=140, Evalue=4e-33, Organism=Homo sapiens, GI221316699, Length=531, Percent_Identity=23.728813559322, Blast_Score=124, Evalue=2e-28, Organism=Homo sapiens, GI153791946, Length=393, Percent_Identity=27.735368956743, Blast_Score=116, Evalue=9e-26, Organism=Homo sapiens, GI310115361, Length=274, Percent_Identity=29.9270072992701, Blast_Score=100, Evalue=8e-21, Organism=Escherichia coli, GI2367256, Length=627, Percent_Identity=26.7942583732057, Blast_Score=191, Evalue=2e-49, Organism=Escherichia coli, GI2367323, Length=460, Percent_Identity=27.3913043478261, Blast_Score=147, Evalue=2e-36, Organism=Caenorhabditis elegans, GI71991189, Length=634, Percent_Identity=27.4447949526814, Blast_Score=202, Evalue=5e-52, Organism=Caenorhabditis elegans, GI17560798, Length=600, Percent_Identity=28.3333333333333, Blast_Score=194, Evalue=1e-49, Organism=Caenorhabditis elegans, GI17560800, Length=600, Percent_Identity=28.3333333333333, Blast_Score=194, Evalue=1e-49, Organism=Caenorhabditis elegans, GI32563849, Length=341, Percent_Identity=29.0322580645161, Blast_Score=107, Evalue=2e-23, Organism=Caenorhabditis elegans, GI71985706, Length=220, Percent_Identity=30.9090909090909, Blast_Score=99, Evalue=6e-21, Organism=Saccharomyces cerevisiae, GI6319706, Length=599, Percent_Identity=25.542570951586, Blast_Score=167, Evalue=5e-42, Organism=Drosophila melanogaster, GI24643749, Length=529, Percent_Identity=27.0321361058601, Blast_Score=178, Evalue=2e-44, Organism=Drosophila melanogaster, GI24643753, Length=529, Percent_Identity=27.0321361058601, Blast_Score=178, Evalue=2e-44, Organism=Drosophila melanogaster, GI24643751, Length=529, Percent_Identity=27.0321361058601, Blast_Score=178, Evalue=2e-44, Organism=Drosophila melanogaster, GI24643746, Length=529, Percent_Identity=27.0321361058601, Blast_Score=178, Evalue=2e-44, Organism=Drosophila melanogaster, GI21357605, Length=529, Percent_Identity=27.0321361058601, Blast_Score=178, Evalue=2e-44, Organism=Drosophila melanogaster, GI24650054, Length=337, Percent_Identity=24.3323442136499, Blast_Score=83, Evalue=7e-16,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR013785 - InterPro: IPR011013 - InterPro: IPR000322 - InterPro: IPR017853 [H]
Pfam domain/function: PF01055 Glyco_hydro_31 [H]
EC number: =3.2.1.20 [H]
Molecular weight: Translated: 90516; Mature: 90385
Theoretical pI: Translated: 5.21; Mature: 5.21
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 2.9 %Met (Translated Protein) 4.2 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 2.7 %Met (Mature Protein) 4.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSMLNPPRFEVQAQEGNRLRLASSAGAAIELFVLEEDIIRVLVLPQGDLRGPATWSIAPG CCCCCCCCEEEEECCCCEEEEEECCCCEEEEEEEECCEEEEEEECCCCCCCCEEEEECCC GDDTPLEGRDRRDLSGFALPAFALHSDADTLRVETSKIRLSVALAGGFCTWQIRGAGGWQ CCCCCCCCCCCCCCCCCCCCCEEECCCCCEEEEEEEEEEEEEEEECCEEEEEEECCCCHH TVLNDRPTQAYNFGYWDEQVYHYVRREPGEMYFGLGERAGDMNRAHQRYEMRNIDAMGYS HHHCCCCCCEEECCCHHHHHHHHHHCCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCC ARTTDPLYKHIPFYVTWQPENRTGFGLFYDTLSDCSFDMGRELDNYHGLYRYFVAPHGDL CCCCCHHHHCCCEEEEECCCCCCEEEEEHHHHHHCCCHHHCCHHHHCCEEEEEECCCCCC DYYFIASPDTPLGATRRFTWMTGRPAWMPKWGLGYSGSTMTYTDAPNAQEQMAEFIKGCR CEEEEECCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHH EHDILCDSFHLSSGYTSIGPKRYVFNWNTDKFPDARGFVQSYLDAGIRLCPNIKPCLLRD HCCCEEEEEECCCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHCCCEECCCCCCEEECC HPKFEEAKQAGLLICDAAGEPAWVQFWDEVGAYLDFTNPKTLDWWKANVKSALLEFGMAS CCCHHHHHHCCEEEEECCCCCHHHHHHHHHCCEEECCCCCCCHHHHHHHHHHHHHHCCCC TWNDNNEFEVWTPDAFAYGFGKKAPIREAKVLHTMLMMRASREAQLEFAPQRRPFLVSRS CCCCCCCEEEECCCHHEECCCCCCCCHHHHHHHHHHHHHCCCCCCEEECCCCCCEEEECC GGVGMQRYVQTWSGDNYTSWETLRYNLKMGLGLALSGVSNIGHDIGGFAGPAPSPELLVR CCCCHHHHHHHCCCCCCCCEEEEEEEEEECCCEEEHHHHHCCHHHCCCCCCCCCHHHHHH WVAFGVFLPRFSIHSWNDDKTVNEPWMYPQITSQIASLIKLRYRLIPYLYELLWQSTQAY HHHHHHHHCCCEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHC EPVLRPTFAEFPNDRRCYAECDDMMIGSSLLVAPAVDEGQTERTVYLPAGARWVSYWSGE CCHHCCHHHHCCCCCCHHHCCCCEEECCCEEEEECCCCCCCCEEEEECCCCEEEEECCCC AFEGGQATTLPSPWDQPVMLVREGGVIALNVAEQHFDQRADQRGFLVVPMQGVGESVGGC CCCCCCCCCCCCCCCCCEEEEECCCEEEEECHHHHHHHHCCCCCEEEEECHHCCHHHCCC IEDDGETEAWRDGEQGRWSVRAVSDAHAITLHVSCEGKMPTLADTVEIHLPAGDVRQVQT CCCCCCCCHHCCCCCCEEEEEEECCCEEEEEEEEECCCCCCCCCEEEEEECCCCCHHCCC PHARVLETVVAGGWRRLTLQLLA CHHHHHHHHHHCCCEEEEEEECC >Mature Secondary Structure SMLNPPRFEVQAQEGNRLRLASSAGAAIELFVLEEDIIRVLVLPQGDLRGPATWSIAPG CCCCCCCEEEEECCCCEEEEEECCCCEEEEEEEECCEEEEEEECCCCCCCCEEEEECCC GDDTPLEGRDRRDLSGFALPAFALHSDADTLRVETSKIRLSVALAGGFCTWQIRGAGGWQ CCCCCCCCCCCCCCCCCCCCCEEECCCCCEEEEEEEEEEEEEEEECCEEEEEEECCCCHH TVLNDRPTQAYNFGYWDEQVYHYVRREPGEMYFGLGERAGDMNRAHQRYEMRNIDAMGYS HHHCCCCCCEEECCCHHHHHHHHHHCCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCC ARTTDPLYKHIPFYVTWQPENRTGFGLFYDTLSDCSFDMGRELDNYHGLYRYFVAPHGDL CCCCCHHHHCCCEEEEECCCCCCEEEEEHHHHHHCCCHHHCCHHHHCCEEEEEECCCCCC DYYFIASPDTPLGATRRFTWMTGRPAWMPKWGLGYSGSTMTYTDAPNAQEQMAEFIKGCR CEEEEECCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHH EHDILCDSFHLSSGYTSIGPKRYVFNWNTDKFPDARGFVQSYLDAGIRLCPNIKPCLLRD HCCCEEEEEECCCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHCCCEECCCCCCEEECC HPKFEEAKQAGLLICDAAGEPAWVQFWDEVGAYLDFTNPKTLDWWKANVKSALLEFGMAS CCCHHHHHHCCEEEEECCCCCHHHHHHHHHCCEEECCCCCCCHHHHHHHHHHHHHHCCCC TWNDNNEFEVWTPDAFAYGFGKKAPIREAKVLHTMLMMRASREAQLEFAPQRRPFLVSRS CCCCCCCEEEECCCHHEECCCCCCCCHHHHHHHHHHHHHCCCCCCEEECCCCCCEEEECC GGVGMQRYVQTWSGDNYTSWETLRYNLKMGLGLALSGVSNIGHDIGGFAGPAPSPELLVR CCCCHHHHHHHCCCCCCCCEEEEEEEEEECCCEEEHHHHHCCHHHCCCCCCCCCHHHHHH WVAFGVFLPRFSIHSWNDDKTVNEPWMYPQITSQIASLIKLRYRLIPYLYELLWQSTQAY HHHHHHHHCCCEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHC EPVLRPTFAEFPNDRRCYAECDDMMIGSSLLVAPAVDEGQTERTVYLPAGARWVSYWSGE CCHHCCHHHHCCCCCCHHHCCCCEEECCCEEEEECCCCCCCCEEEEECCCCEEEEECCCC AFEGGQATTLPSPWDQPVMLVREGGVIALNVAEQHFDQRADQRGFLVVPMQGVGESVGGC CCCCCCCCCCCCCCCCCEEEEECCCEEEEECHHHHHHHHCCCCCEEEEECHHCCHHHCCC IEDDGETEAWRDGEQGRWSVRAVSDAHAITLHVSCEGKMPTLADTVEIHLPAGDVRQVQT CCCCCCCCHHCCCCCCEEEEEEECCCEEEEEEEEECCCCCCCCCEEEEEECCCCCHHCCC PHARVLETVVAGGWRRLTLQLLA CHHHHHHHHHHCCCEEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 10945254 [H]