Click here to switch to the map view.

The map label for this gene is 187927567

Identifier: 187927567

GI number: 187927567

Start: 501422

End: 502072

Strand: Direct

Name: 187927567

Synonym: Rpic_0467

Alternate gene names: NA

Gene position: 501422-502072 (Clockwise)

Preceding gene: 187927566

Following gene: 187927571

Centisome position: 12.72

GC content: 62.06

Gene sequence:

>651_bases
ATGAGCGGGAGGCTCTCCGACTGGCTGCGGGCACTGCAAAGGCGGCGCCTGCTGCGCAGGTTGCGCGATCCGGCGTTCCG
CTTCCTGTTTGAGGTACCGCCCCCGGACGAGTGGGTCGCACTTGATTGCGAGACCACCGGCCTGGACGTACGCACCGACG
AGATCATCTCCATCGGTGCCGTCCGTATTGTCGGCAATCGTATCCTGACCAGCCAGCGCCTTGAGTTGCTGATCAGACCG
CAAGGGGAGATGCGCCCGGAAAGCATCTGCGTGCATCGTCTGCGCAATCGCGACCTGGACAGCGGTGTATCGATCGAGCA
GGCGGTTCATACATTGCTGCACTTCATCGGCAGTAGGCCGCTGGTCGGCTATTACCTTGAGTTCGATGTGGCGATGCTCA
ATCGGGTGGTGGTGCCCATGCTTGGCATCGGCTTGCCGCAGCCCAAGATTGAAGTGTCCGCCTTGTACTACGACCATCAG
TTCGCCCTGCTGCCGCCATATCGGCAGCAGGGCGATCCCGATCTGGACCTGCGCTTCGCCACCGTCATGAAGGAACTGGA
CTTGCCCACGTGGGACGCGCACGACGCGCTCAACGACGCGGTGATGGCCGCGTTGGCCTTTGTGAAGCTGCGCCATCTGG
GTGAAGCGTAA

Upstream 100 bases:

>100_bases
CGAGATCTGCTCAAGGATGCACTGAGCGCGGTCAAGCGGTTCAAGGCGTTGCTGCGGCAGCGCTGGCGGACCGAGTGGAT
GTGATCATGGGCGGGTGGTC

Downstream 100 bases:

>100_bases
CGTCCAGGTCAGATGGACGGCGGCAGGTGGGATGACTCCGACGGATCGCGCTGCGCCGCTTCGTCGTGTTGTGCGGCTGC
ATCTGCAGCCCGGTTCGTGC

Product: DNA polymerase III subunit epsilon

Products: diphosphate; DNAn+1

Alternate protein names: DNA Polymerase III Epsilon Subunit; Exonuclease RNAse T And DNA Polymerase III; Exonuclease; Exonuclease Family Protein; Exonuclease RNAase T And DNA Polymerase III; Exonuclease Superfamily; DNA Polymerase III PolC-Type; DNA Polymerase III Epsilon Chain-Like Protein; PAS/PAC Sensor Protein

Number of amino acids: Translated: 216; Mature: 215

Protein sequence:

>216_residues
MSGRLSDWLRALQRRRLLRRLRDPAFRFLFEVPPPDEWVALDCETTGLDVRTDEIISIGAVRIVGNRILTSQRLELLIRP
QGEMRPESICVHRLRNRDLDSGVSIEQAVHTLLHFIGSRPLVGYYLEFDVAMLNRVVVPMLGIGLPQPKIEVSALYYDHQ
FALLPPYRQQGDPDLDLRFATVMKELDLPTWDAHDALNDAVMAALAFVKLRHLGEA

Sequences:

>Translated_216_residues
MSGRLSDWLRALQRRRLLRRLRDPAFRFLFEVPPPDEWVALDCETTGLDVRTDEIISIGAVRIVGNRILTSQRLELLIRP
QGEMRPESICVHRLRNRDLDSGVSIEQAVHTLLHFIGSRPLVGYYLEFDVAMLNRVVVPMLGIGLPQPKIEVSALYYDHQ
FALLPPYRQQGDPDLDLRFATVMKELDLPTWDAHDALNDAVMAALAFVKLRHLGEA
>Mature_215_residues
SGRLSDWLRALQRRRLLRRLRDPAFRFLFEVPPPDEWVALDCETTGLDVRTDEIISIGAVRIVGNRILTSQRLELLIRPQ
GEMRPESICVHRLRNRDLDSGVSIEQAVHTLLHFIGSRPLVGYYLEFDVAMLNRVVVPMLGIGLPQPKIEVSALYYDHQF
ALLPPYRQQGDPDLDLRFATVMKELDLPTWDAHDALNDAVMAALAFVKLRHLGEA

Specific function: Unknown

COG id: COG0847

COG function: function code L; DNA polymerase III, epsilon subunit and related 3'-5' exonucleases

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: 2.7.7.7

Molecular weight: Translated: 24688; Mature: 24557

Theoretical pI: Translated: 6.52; Mature: 6.52

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSGRLSDWLRALQRRRLLRRLRDPAFRFLFEVPPPDEWVALDCETTGLDVRTDEIISIGA
CCCCHHHHHHHHHHHHHHHHHHCHHHHEEEECCCCCCEEEEECCCCCCCCCCHHHHHHHH
VRIVGNRILTSQRLELLIRPQGEMRPESICVHRLRNRDLDSGVSIEQAVHTLLHFIGSRP
HHHHHHHHHHHHHHHEEECCCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCC
LVGYYLEFDVAMLNRVVVPMLGIGLPQPKIEVSALYYDHQFALLPPYRQQGDPDLDLRFA
CEEHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCEEEECCCHHHCCCCCCCHHHH
TVMKELDLPTWDAHDALNDAVMAALAFVKLRHLGEA
HHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
SGRLSDWLRALQRRRLLRRLRDPAFRFLFEVPPPDEWVALDCETTGLDVRTDEIISIGA
CCCHHHHHHHHHHHHHHHHHHCHHHHEEEECCCCCCEEEEECCCCCCCCCCHHHHHHHH
VRIVGNRILTSQRLELLIRPQGEMRPESICVHRLRNRDLDSGVSIEQAVHTLLHFIGSRP
HHHHHHHHHHHHHHHEEECCCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCC
LVGYYLEFDVAMLNRVVVPMLGIGLPQPKIEVSALYYDHQFALLPPYRQQGDPDLDLRFA
CEEHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCEEEECCCHHHCCCCCCCHHHH
TVMKELDLPTWDAHDALNDAVMAALAFVKLRHLGEA
HHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: deoxynucleoside triphosphate; DNAn

Specific reaction: deoxynucleoside triphosphate + DNA(n) = diphosphate + DNA(n+1)

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA