| Definition | Akkermansia muciniphila ATCC BAA-835, complete genome. |
|---|---|
| Accession | NC_010655 |
| Length | 2,664,102 |
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The map label for this gene is 187735080
Identifier: 187735080
GI number: 187735080
Start: 672244
End: 672963
Strand: Direct
Name: 187735080
Synonym: Amuc_0574
Alternate gene names: NA
Gene position: 672244-672963 (Clockwise)
Preceding gene: 187735079
Following gene: 187735081
Centisome position: 25.23
GC content: 56.67
Gene sequence:
>720_bases ATGCTAGGGTGGCAGGCGATGAATCATGCCGATTTAGACCAGTTGCTGATCCTTCAGGAAAAGGATGTGCGGATCTCCAA ACTCCGGAAGGAGCTGGCTTCCCTGCCGGAACAGAGAACGCGCCTGCTGAAGCAGATGGAGGCCATCAAGCAGAAGGCCC TGGCCGCCAAACAGGAAGTGGCAGGCATTGAAAAAAGCATACGGGACGTGGAGGCCGCCGTTGAAACCAAACGCGCCTAC ATCGGCAAAATGAAAACCCTTCAGTCCAACACCCGGAAAAACGAGGAATACCAGATGTGCATCCAGGAGGTGGAAAAAAC GGAAGCCGCTATTGACTCTCTGGAAACCTCAGAGCTGGAATTGATGGAGCGCCTGGAAACAGCAAAAACGGACATGGAGC AGAAAATCCGCCGTGCACGGGACGCCCAGCGTGAACTGGAGGAAACGCTCGCGCGCTTTGACCGGACGGCAGAGACGGAC AAGGAGCTCCTTAACCGCTTGAATGCGGAACGCGCGGATCTGGCCGCCGCCGTTCCGGAAAATTCCCTGGGGGAATATGA ACGGATGACCAGAAGCAAGGGGGTTCCGGTCATTGTGCCAATGGATGAAAAAGGCCATTGCGGCGGCTGCCACATGGTTA TCACGGACAACGCCCGCATGAAAGTGCTGGGCGGCCACGAGACCGTTTACTGCGACAGCTGCCACCGCATCCTCCACTGA
Upstream 100 bases:
>100_bases AGAGAACAGAAAAATATTTCTCAGGCTTCCCCGCACCGTCAACAGGCGGCAGAACCGCCGCCCCGGAGCCAAGAAAAAAT CTTTTCCCCCCCGGCAGGGC
Downstream 100 bases:
>100_bases AGGAGTTTCCAGGAACGCCGCCGGGCTTGCCATGAAATCCAGATCGGAAGAATTTGAAGAGTGGGGGACGGAAGTCATCT TCGGCCGTGCCAAGGGATTC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 239; Mature: 239
Protein sequence:
>239_residues MLGWQAMNHADLDQLLILQEKDVRISKLRKELASLPEQRTRLLKQMEAIKQKALAAKQEVAGIEKSIRDVEAAVETKRAY IGKMKTLQSNTRKNEEYQMCIQEVEKTEAAIDSLETSELELMERLETAKTDMEQKIRRARDAQRELEETLARFDRTAETD KELLNRLNAERADLAAAVPENSLGEYERMTRSKGVPVIVPMDEKGHCGGCHMVITDNARMKVLGGHETVYCDSCHRILH
Sequences:
>Translated_239_residues MLGWQAMNHADLDQLLILQEKDVRISKLRKELASLPEQRTRLLKQMEAIKQKALAAKQEVAGIEKSIRDVEAAVETKRAY IGKMKTLQSNTRKNEEYQMCIQEVEKTEAAIDSLETSELELMERLETAKTDMEQKIRRARDAQRELEETLARFDRTAETD KELLNRLNAERADLAAAVPENSLGEYERMTRSKGVPVIVPMDEKGHCGGCHMVITDNARMKVLGGHETVYCDSCHRILH >Mature_239_residues MLGWQAMNHADLDQLLILQEKDVRISKLRKELASLPEQRTRLLKQMEAIKQKALAAKQEVAGIEKSIRDVEAAVETKRAY IGKMKTLQSNTRKNEEYQMCIQEVEKTEAAIDSLETSELELMERLETAKTDMEQKIRRARDAQRELEETLARFDRTAETD KELLNRLNAERADLAAAVPENSLGEYERMTRSKGVPVIVPMDEKGHCGGCHMVITDNARMKVLGGHETVYCDSCHRILH
Specific function: Unknown
COG id: COG1579
COG function: function code R; Zn-ribbon protein, possibly nucleic acid-binding
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 27292; Mature: 27292
Theoretical pI: Translated: 6.27; Mature: 6.27
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.1 %Cys (Translated Protein) 4.6 %Met (Translated Protein) 6.7 %Cys+Met (Translated Protein) 2.1 %Cys (Mature Protein) 4.6 %Met (Mature Protein) 6.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLGWQAMNHADLDQLLILQEKDVRISKLRKELASLPEQRTRLLKQMEAIKQKALAAKQEV CCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH AGIEKSIRDVEAAVETKRAYIGKMKTLQSNTRKNEEYQMCIQEVEKTEAAIDSLETSELE HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCHHHHH LMERLETAKTDMEQKIRRARDAQRELEETLARFDRTAETDKELLNRLNAERADLAAAVPE HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHCCC NSLGEYERMTRSKGVPVIVPMDEKGHCGGCHMVITDNARMKVLGGHETVYCDSCHRILH CCHHHHHHHHHHCCCEEEEECCCCCCCCCEEEEEECCCEEEEECCCCEEEHHHHHHHCC >Mature Secondary Structure MLGWQAMNHADLDQLLILQEKDVRISKLRKELASLPEQRTRLLKQMEAIKQKALAAKQEV CCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH AGIEKSIRDVEAAVETKRAYIGKMKTLQSNTRKNEEYQMCIQEVEKTEAAIDSLETSELE HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCHHHHH LMERLETAKTDMEQKIRRARDAQRELEETLARFDRTAETDKELLNRLNAERADLAAAVPE HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHCCC NSLGEYERMTRSKGVPVIVPMDEKGHCGGCHMVITDNARMKVLGGHETVYCDSCHRILH CCHHHHHHHHHHCCCEEEEECCCCCCCCCEEEEEECCCEEEEECCCCEEEHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA