| Definition | Akkermansia muciniphila ATCC BAA-835, complete genome. |
|---|---|
| Accession | NC_010655 |
| Length | 2,664,102 |
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The map label for this gene is 187735009
Identifier: 187735009
GI number: 187735009
Start: 592354
End: 593475
Strand: Reverse
Name: 187735009
Synonym: Amuc_0502
Alternate gene names: NA
Gene position: 593475-592354 (Counterclockwise)
Preceding gene: 187735011
Following gene: 187735008
Centisome position: 22.28
GC content: 55.17
Gene sequence:
>1122_bases ATGAGTTCACTTTCCGATACCAGGCCGCAGAGAATTGCGGCCATTGACGCCCTGCGGGGATTTGACATGTTTTTCCTGAC CGGGGGCCTGGCTCTGGTTGTGGCCGGCATCAATCTTTTTTACGACCGGAGCCCCGAGTGGCTGGTGAAGCACAGCACGC ACGTGGCTTGGGAGGGATTCGCCGCCTGGGATCTGGTGATGCCCCTCTTTTTGTTCATTGTGGGAACGGCCATGCCGTTT TCCTTTTCCAAACGCATCGGTTCGGAACCTCTGTGGAAGATTTACCTGAAGGTTGCCAGGCGGGTAGTGGTGCTTTTTTT GCTGGGCATGGTGGTGCAGGGCAATCTGCTGAGTTTTGAACCGTCCAGGATGTCCCTGTACTGCAATACGCTCCAGGCCA TCGCCTCCGGCTACCTGATTGCGGCCATTTGCCTTCTTCATCTGTCCATCCGGTGGCAGGTAGCGGCAACGGGGGGGCTG CTGGCTGTGTACTGGCTGGTCATGAAGTTTGTTTCCTTTTCTGACCCCGCGGTGGGTTCCTGTGCGGCAGGAATGCTTGA ACCGGGGAGGAATCTGGCCCTGCTGCTGGATAAATACCTGATGGGAAACTGGCAGGATGGAACGAATTATGCGTGGATTC TGGCGCAGTTCGGTTTTGGCGCCATGACCATGCTCGGTCTGCTGGGCGGCCAGATTCTGAAGCGGGTGCAGGGGCACGGG AAAAAGCTGGCGTGGCTGTTATGTGCGGGCGCGGGCTGCCTGGCGCTGGGATATGCCTGGAGCCTGGATTTTCCGATGAT CAAGCGTTTGTTCACCAGTTCCATGGTATTGTGGGCGGCGGGATGGTGCTATTTTCTGCTGTTCCTGTTCTATCTGCTGA CGGATGTGCTGAAATTGAACTGGTTGACATTCTTTTTCTCCGTAATAGGGAGCAATGCCATTTTCGTGTACATGTGGGTA TCTCTGTGCCCCCCTACGGGCAATTTCTCCCGGGTATTGTTTGCCGGGTTTAGCGAGTGCTTCGGGGATGCGGACAGGTT TGTCTTTTACCTGTGCAATTACGCCCTGATTTGGGGCGTGTTGTATTACATGTACAAAAACCGGACCTTCATCAAGGTCT AG
Upstream 100 bases:
>100_bases ACAGGTTTTTCCGGAAACAGCCGTTTTTCTTTGCGGAGCCTTAGAAAAAGAAAGTCTTTGGAAAGGTTGGCGGACGTGGT GCCGTAGTTGGAATGTTGCC
Downstream 100 bases:
>100_bases GCTTGTTTTCAGCCCTTCGTTCATAGTAGGGTCTCCCCGTGCGGAAGGCGGGGAACGCCTTCCGCACGGGATCGGCATGC CCGCGCCGGGCGTCCGTCAT
Product: transmembrane protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 373; Mature: 372
Protein sequence:
>373_residues MSSLSDTRPQRIAAIDALRGFDMFFLTGGLALVVAGINLFYDRSPEWLVKHSTHVAWEGFAAWDLVMPLFLFIVGTAMPF SFSKRIGSEPLWKIYLKVARRVVVLFLLGMVVQGNLLSFEPSRMSLYCNTLQAIASGYLIAAICLLHLSIRWQVAATGGL LAVYWLVMKFVSFSDPAVGSCAAGMLEPGRNLALLLDKYLMGNWQDGTNYAWILAQFGFGAMTMLGLLGGQILKRVQGHG KKLAWLLCAGAGCLALGYAWSLDFPMIKRLFTSSMVLWAAGWCYFLLFLFYLLTDVLKLNWLTFFFSVIGSNAIFVYMWV SLCPPTGNFSRVLFAGFSECFGDADRFVFYLCNYALIWGVLYYMYKNRTFIKV
Sequences:
>Translated_373_residues MSSLSDTRPQRIAAIDALRGFDMFFLTGGLALVVAGINLFYDRSPEWLVKHSTHVAWEGFAAWDLVMPLFLFIVGTAMPF SFSKRIGSEPLWKIYLKVARRVVVLFLLGMVVQGNLLSFEPSRMSLYCNTLQAIASGYLIAAICLLHLSIRWQVAATGGL LAVYWLVMKFVSFSDPAVGSCAAGMLEPGRNLALLLDKYLMGNWQDGTNYAWILAQFGFGAMTMLGLLGGQILKRVQGHG KKLAWLLCAGAGCLALGYAWSLDFPMIKRLFTSSMVLWAAGWCYFLLFLFYLLTDVLKLNWLTFFFSVIGSNAIFVYMWV SLCPPTGNFSRVLFAGFSECFGDADRFVFYLCNYALIWGVLYYMYKNRTFIKV >Mature_372_residues SSLSDTRPQRIAAIDALRGFDMFFLTGGLALVVAGINLFYDRSPEWLVKHSTHVAWEGFAAWDLVMPLFLFIVGTAMPFS FSKRIGSEPLWKIYLKVARRVVVLFLLGMVVQGNLLSFEPSRMSLYCNTLQAIASGYLIAAICLLHLSIRWQVAATGGLL AVYWLVMKFVSFSDPAVGSCAAGMLEPGRNLALLLDKYLMGNWQDGTNYAWILAQFGFGAMTMLGLLGGQILKRVQGHGK KLAWLLCAGAGCLALGYAWSLDFPMIKRLFTSSMVLWAAGWCYFLLFLFYLLTDVLKLNWLTFFFSVIGSNAIFVYMWVS LCPPTGNFSRVLFAGFSECFGDADRFVFYLCNYALIWGVLYYMYKNRTFIKV
Specific function: Unknown
COG id: COG4299
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 41881; Mature: 41750
Theoretical pI: Translated: 9.15; Mature: 9.15
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.4 %Cys (Translated Protein) 4.0 %Met (Translated Protein) 6.4 %Cys+Met (Translated Protein) 2.4 %Cys (Mature Protein) 3.8 %Met (Mature Protein) 6.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSSLSDTRPQRIAAIDALRGFDMFFLTGGLALVVAGINLFYDRSPEWLVKHSTHVAWEGF CCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHCCCCEEEECCH AAWDLVMPLFLFIVGTAMPFSFSKRIGSEPLWKIYLKVARRVVVLFLLGMVVQGNLLSFE HHHHHHHHHHHHHHHHCCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEC PSRMSLYCNTLQAIASGYLIAAICLLHLSIRWQVAATGGLLAVYWLVMKFVSFSDPAVGS CCHHHHHHHHHHHHHCCHHHHHHHHHHHHHEEEEEECCCHHHHHHHHHHHHCCCCCCCHH CAAGMLEPGRNLALLLDKYLMGNWQDGTNYAWILAQFGFGAMTMLGLLGGQILKRVQGHG HHHHHCCCCCCHHHHHHHHHHCCCCCCCCCEEEEEHHCHHHHHHHHHHHHHHHHHHHCCC KKLAWLLCAGAGCLALGYAWSLDFPMIKRLFTSSMVLWAAGWCYFLLFLFYLLTDVLKLN CCEEHHHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH WLTFFFSVIGSNAIFVYMWVSLCPPTGNFSRVLFAGFSECFGDADRFVFYLCNYALIWGV HHHHHHHHHCCCCEEEEEEHHHCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH LYYMYKNRTFIKV HHHHHCCCEEEEC >Mature Secondary Structure SSLSDTRPQRIAAIDALRGFDMFFLTGGLALVVAGINLFYDRSPEWLVKHSTHVAWEGF CCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHCCCCEEEECCH AAWDLVMPLFLFIVGTAMPFSFSKRIGSEPLWKIYLKVARRVVVLFLLGMVVQGNLLSFE HHHHHHHHHHHHHHHHCCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEC PSRMSLYCNTLQAIASGYLIAAICLLHLSIRWQVAATGGLLAVYWLVMKFVSFSDPAVGS CCHHHHHHHHHHHHHCCHHHHHHHHHHHHHEEEEEECCCHHHHHHHHHHHHCCCCCCCHH CAAGMLEPGRNLALLLDKYLMGNWQDGTNYAWILAQFGFGAMTMLGLLGGQILKRVQGHG HHHHHCCCCCCHHHHHHHHHHCCCCCCCCCEEEEEHHCHHHHHHHHHHHHHHHHHHHCCC KKLAWLLCAGAGCLALGYAWSLDFPMIKRLFTSSMVLWAAGWCYFLLFLFYLLTDVLKLN CCEEHHHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH WLTFFFSVIGSNAIFVYMWVSLCPPTGNFSRVLFAGFSECFGDADRFVFYLCNYALIWGV HHHHHHHHHCCCCEEEEEEHHHCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH LYYMYKNRTFIKV HHHHHCCCEEEEC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA